Wall clock time and date at job start Sat Apr 11 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28520 * 124.44126 * 2 1 4 4 C 1.31137 * 109.05639 * 179.69270 * 3 2 1 5 5 C 1.40924 * 105.77253 * 0.42866 * 4 3 2 6 6 C 1.47801 * 127.23454 * 179.84192 * 5 4 3 7 7 O 1.21561 * 120.00227 * 359.70057 * 6 5 4 8 8 N 1.34776 * 120.00077 * 179.70912 * 6 5 4 9 9 C 1.47588 * 134.49375 * 179.97438 * 8 6 5 10 10 C 1.53939 * 86.11490 * 155.35802 * 9 8 6 11 11 C 1.53006 * 113.74007 * 137.95564 * 10 9 8 12 12 N 1.46504 * 109.46883 * 174.99955 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99753 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99298 * 21 19 17 23 23 H 1.48498 * 109.47245 * 209.99827 * 21 19 17 24 24 H 1.48501 * 109.47001 * 329.99938 * 21 19 17 25 25 C 1.47580 * 134.49153 * 359.97438 * 8 6 5 26 26 N 1.28584 * 124.44493 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46874 * 270.02948 * 1 2 3 28 28 H 1.09000 * 109.47162 * 30.02695 * 1 2 3 29 29 H 1.08999 * 109.47287 * 150.03142 * 1 2 3 30 30 H 1.07998 * 127.11334 * 180.28808 * 4 3 2 31 31 H 1.09003 * 113.76693 * 41.05388 * 9 8 6 32 32 H 1.08998 * 113.76396 * 269.66112 * 9 8 6 33 33 H 1.09005 * 113.74232 * 269.15116 * 10 9 8 34 34 H 1.09001 * 109.47002 * 294.99452 * 11 10 9 35 35 H 1.08993 * 109.46955 * 54.99889 * 11 10 9 36 36 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 37 37 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 38 38 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 39 39 H 0.96998 * 119.99664 * 180.02562 * 20 19 17 40 40 H 1.09012 * 113.76784 * 90.34405 * 25 8 6 41 41 H 1.08992 * 113.77167 * 318.94959 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0066 5 6 3.4658 -0.6972 0.0008 6 6 4.6486 -1.5835 0.0014 7 8 5.7663 -1.1055 0.0020 8 7 4.4880 -2.9216 0.0012 9 6 5.4100 -4.0741 0.0012 10 6 4.2547 -4.8648 0.6413 11 6 4.0854 -6.2758 0.0741 12 7 3.0456 -6.9828 0.8260 13 6 2.7229 -8.2503 0.5007 14 8 3.2936 -8.8057 -0.4140 15 6 1.6538 -8.9778 1.2745 16 16 1.4535 -10.6468 0.6035 17 6 0.1812 -11.2516 1.6620 18 1 -0.2223 -10.6179 2.4379 19 6 -0.3023 -12.5423 1.4987 20 7 -1.2524 -12.9942 2.2898 21 14 0.3962 -13.6387 0.1572 22 1 1.5495 -14.4046 0.6944 23 1 -0.6522 -14.5826 -0.3066 24 1 0.8468 -12.8003 -0.9827 25 6 3.3194 -3.8231 0.0009 26 7 2.1923 -1.0604 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5133 30 1 4.3130 1.3695 0.0128 31 1 6.2717 -3.9473 0.6565 32 1 5.6799 -4.4206 -0.9964 33 1 4.2585 -4.8426 1.7311 34 1 3.7962 -6.2133 -0.9750 35 1 5.0274 -6.8172 0.1597 36 1 2.5895 -6.5387 1.5578 37 1 1.9436 -9.0408 2.3234 38 1 0.7117 -8.4363 1.1896 39 1 -1.5900 -13.8964 2.1759 40 1 2.9754 -4.0960 -0.9969 41 1 2.5120 -3.4959 0.6559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738036815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:53 Heat of formation + Delta-G solvation = 81.114434 kcal Electronic energy + Delta-G solvation = -25352.012633 eV Core-core repulsion = 21397.832761 eV Total energy + Delta-G solvation = -3954.179872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.12349 -40.76211 -39.25874 -38.16758 -34.64009 -34.29807 -33.23808 -32.46232 -31.14153 -29.45413 -28.42663 -26.70612 -26.14413 -25.58509 -23.88775 -22.55908 -21.23130 -20.51599 -19.63923 -18.03671 -17.87845 -17.50860 -17.38301 -16.72081 -16.42618 -16.35149 -15.44478 -15.39181 -15.21606 -14.97681 -14.45831 -14.08897 -13.82946 -13.63559 -13.48741 -13.36397 -13.23022 -13.05447 -12.82107 -12.57938 -12.36501 -11.97435 -11.76915 -11.54357 -11.28959 -11.16434 -11.02908 -10.93473 -10.65167 -10.50779 -9.94573 -9.88171 -9.58698 -9.16669 -9.07101 -9.00874 -8.52928 -6.94602 -6.31343 -4.03295 0.83384 1.47806 1.63926 2.28409 2.71353 2.83379 2.92476 3.23677 3.31652 3.37005 3.48456 3.58136 3.91038 4.02216 4.30888 4.40361 4.43046 4.47214 4.50960 4.58756 4.69713 4.71842 4.79992 4.96680 5.07753 5.10546 5.13681 5.18588 5.24377 5.32450 5.44252 5.55357 5.57610 5.73379 5.81000 5.97853 6.00208 6.43854 7.13287 7.52112 7.53565 7.72793 7.91684 8.39022 8.43256 9.14842 10.77816 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.001890 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.796247 B =14807.455598 C =15989.917441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.142 5.142 3 N -0.290 5.290 4 C 0.036 3.964 5 C -0.045 4.045 6 C 0.632 3.368 7 O -0.528 6.528 8 N -0.634 5.634 9 C 0.122 3.878 10 C -0.137 4.137 11 C 0.131 3.869 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.114 3.886 26 N -0.244 5.244 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.209 0.791 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.092 0.908 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 27.867 -3.326 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.045 5.045 3 N -0.130 5.130 4 C -0.148 4.148 5 C -0.207 4.207 6 C 0.419 3.581 7 O -0.402 6.402 8 N -0.368 5.368 9 C 0.000 4.000 10 C -0.157 4.157 11 C 0.007 3.993 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.008 4.008 26 N -0.093 5.093 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.225 0.775 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.539 27.275 -4.818 28.459 hybrid contribution -0.083 0.320 1.023 1.075 sum 6.456 27.595 -3.795 28.593 Atomic orbital electron populations 1.22317 0.69350 1.06478 1.05610 1.48113 1.09394 0.99220 1.47786 1.74052 1.03808 1.15499 1.19635 1.24863 0.94358 0.93532 1.02052 1.22940 0.91208 0.94608 1.11975 1.16186 0.85959 0.79702 0.76268 1.90836 1.24012 1.74355 1.51033 1.49715 1.11623 1.03115 1.72386 1.23199 0.94392 0.80764 1.01671 1.23467 0.96723 0.93556 1.01933 1.21216 0.92362 0.89722 0.96029 1.45932 1.41088 1.14569 1.37562 1.20280 0.83288 0.80874 0.83877 1.90709 1.52649 1.66279 1.29668 1.23278 0.99733 1.01508 1.02984 1.84806 1.51604 1.07710 1.47468 1.22311 1.22159 1.02816 1.19619 0.89383 1.24723 0.93885 0.96933 0.95831 1.69940 1.26501 1.17794 1.37431 0.86728 0.79589 0.81823 0.83672 1.19199 1.19959 1.15918 1.23431 0.90461 0.85308 1.01641 1.74426 1.02975 1.15597 1.16335 0.88598 0.87438 0.87349 0.77467 0.89113 0.88730 0.87012 0.90906 0.90674 0.76573 0.88476 0.88442 0.91934 0.88980 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.28 11.55 59.85 0.69 0.97 16 2 N -0.14 -1.09 4.34 -16.63 -0.07 -1.16 16 3 N -0.29 -2.57 12.01 30.90 0.37 -2.20 16 4 C 0.04 0.32 12.04 -16.83 -0.20 0.11 16 5 C -0.04 -0.45 7.15 -82.68 -0.59 -1.04 16 6 C 0.63 6.94 8.06 -12.35 -0.10 6.84 16 7 O -0.53 -7.18 17.68 5.31 0.09 -7.09 16 8 N -0.63 -5.54 3.61 -179.50 -0.65 -6.19 16 9 C 0.12 0.83 8.40 -2.97 -0.02 0.80 16 10 C -0.14 -0.84 3.94 -89.69 -0.35 -1.19 16 11 C 0.13 1.12 5.53 -4.04 -0.02 1.10 16 12 N -0.74 -7.79 5.56 -60.29 -0.33 -8.13 16 13 C 0.53 8.60 7.85 -10.98 -0.09 8.51 16 14 O -0.52 -10.50 15.86 5.56 0.09 -10.42 16 15 C -0.12 -2.25 6.16 36.01 0.22 -2.03 16 16 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 17 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 18 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 19 C 0.09 2.73 5.50 -17.43 -0.10 2.64 16 20 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 21 Si 0.86 21.44 27.74 -169.99 -4.72 16.72 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 25 C 0.11 0.77 7.50 -2.97 -0.02 0.75 16 26 N -0.24 -2.20 10.60 33.42 0.35 -1.85 16 27 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.40 3.10 8.47 -40.82 -0.35 2.76 16 37 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.09 0.60 7.89 -51.92 -0.41 0.19 16 41 H 0.09 0.60 7.54 -51.93 -0.39 0.21 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -38.30 373.97 -6.08 -44.37 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.36 Total: -1.90 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.27 Total: 3.09 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.45 Total: -44.92 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.18 Total: -17.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.72 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.30 -6.08 -44.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738036815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.489 kcal (2) G-P(sol) polarization free energy of solvation -38.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds