Wall clock time and date at job start Sat Apr 11 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28520 * 124.44126 * 2 1 4 4 C 1.31137 * 109.05639 * 179.69270 * 3 2 1 5 5 C 1.40924 * 105.77253 * 0.42866 * 4 3 2 6 6 C 1.47801 * 127.23454 * 179.84192 * 5 4 3 7 7 O 1.21561 * 120.00227 * 359.70057 * 6 5 4 8 8 N 1.34776 * 120.00077 * 179.70912 * 6 5 4 9 9 C 1.47588 * 134.49375 * 179.97438 * 8 6 5 10 10 C 1.53939 * 86.11490 * 155.35802 * 9 8 6 11 11 C 1.53006 * 113.74007 * 137.95564 * 10 9 8 12 12 N 1.46504 * 109.46883 * 174.99955 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99753 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99298 * 21 19 17 23 23 H 1.48498 * 109.47245 * 209.99827 * 21 19 17 24 24 H 1.48501 * 109.47001 * 329.99938 * 21 19 17 25 25 C 1.47580 * 134.49153 * 359.97438 * 8 6 5 26 26 N 1.28584 * 124.44493 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46874 * 270.02948 * 1 2 3 28 28 H 1.09000 * 109.47162 * 30.02695 * 1 2 3 29 29 H 1.08999 * 109.47287 * 150.03142 * 1 2 3 30 30 H 1.07998 * 127.11334 * 180.28808 * 4 3 2 31 31 H 1.09003 * 113.76693 * 41.05388 * 9 8 6 32 32 H 1.08998 * 113.76396 * 269.66112 * 9 8 6 33 33 H 1.09005 * 113.74232 * 269.15116 * 10 9 8 34 34 H 1.09001 * 109.47002 * 294.99452 * 11 10 9 35 35 H 1.08993 * 109.46955 * 54.99889 * 11 10 9 36 36 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 37 37 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 38 38 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 39 39 H 0.96998 * 119.99664 * 180.02562 * 20 19 17 40 40 H 1.09012 * 113.76784 * 90.34405 * 25 8 6 41 41 H 1.08992 * 113.77167 * 318.94959 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0066 5 6 3.4658 -0.6972 0.0008 6 6 4.6486 -1.5835 0.0014 7 8 5.7663 -1.1055 0.0020 8 7 4.4880 -2.9216 0.0012 9 6 5.4100 -4.0741 0.0012 10 6 4.2547 -4.8648 0.6413 11 6 4.0854 -6.2758 0.0741 12 7 3.0456 -6.9828 0.8260 13 6 2.7229 -8.2503 0.5007 14 8 3.2936 -8.8057 -0.4140 15 6 1.6538 -8.9778 1.2745 16 16 1.4535 -10.6468 0.6035 17 6 0.1812 -11.2516 1.6620 18 1 -0.2223 -10.6179 2.4379 19 6 -0.3023 -12.5423 1.4987 20 7 -1.2524 -12.9942 2.2898 21 14 0.3962 -13.6387 0.1572 22 1 1.5495 -14.4046 0.6944 23 1 -0.6522 -14.5826 -0.3066 24 1 0.8468 -12.8003 -0.9827 25 6 3.3194 -3.8231 0.0009 26 7 2.1923 -1.0604 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5133 30 1 4.3130 1.3695 0.0128 31 1 6.2717 -3.9473 0.6565 32 1 5.6799 -4.4206 -0.9964 33 1 4.2585 -4.8426 1.7311 34 1 3.7962 -6.2133 -0.9750 35 1 5.0274 -6.8172 0.1597 36 1 2.5895 -6.5387 1.5578 37 1 1.9436 -9.0408 2.3234 38 1 0.7117 -8.4363 1.1896 39 1 -1.5900 -13.8964 2.1759 40 1 2.9754 -4.0960 -0.9969 41 1 2.5120 -3.4959 0.6559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738036815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:53 Heat of formation + Delta-G solvation = 50.942405 kcal Electronic energy + Delta-G solvation = -25353.320991 eV Core-core repulsion = 21397.832761 eV Total energy + Delta-G solvation = -3955.488230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.73866 -41.46644 -40.44444 -38.99701 -35.68743 -34.81856 -34.64431 -33.89290 -32.11313 -30.55815 -28.95859 -27.85466 -27.26270 -26.87385 -24.56581 -23.12584 -21.97001 -21.65132 -20.31635 -19.81368 -18.58247 -18.09886 -18.08823 -17.73149 -17.58206 -17.10637 -17.06578 -16.56010 -16.28934 -15.79245 -15.70400 -15.30160 -14.94386 -14.77094 -14.36930 -14.27316 -13.87083 -13.67449 -13.61464 -13.58624 -13.31937 -13.08044 -13.03647 -12.95328 -12.62591 -12.39257 -12.18791 -11.85507 -11.78435 -11.58701 -11.33140 -11.14779 -10.93720 -10.54642 -10.49230 -10.06462 -9.83518 -8.95771 -8.49242 -6.19243 0.14977 0.82578 1.02980 1.18588 1.33591 1.49342 1.58719 1.63740 1.67951 2.07247 2.25586 2.29646 2.74272 2.76236 2.89173 3.26529 3.45083 3.79870 3.87537 3.91878 4.04709 4.20656 4.25494 4.29167 4.30069 4.41109 4.47888 4.53951 4.57387 4.60965 4.65172 4.74337 4.78543 4.84845 4.95683 5.21477 5.47198 5.48909 5.73151 6.14204 6.43124 6.53670 6.80992 6.96340 7.04831 7.26479 8.62942 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.001890 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.796247 B =14807.455598 C =15989.917441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.136 5.136 3 N -0.301 5.301 4 C 0.028 3.972 5 C -0.066 4.066 6 C 0.627 3.373 7 O -0.565 6.565 8 N -0.636 5.636 9 C 0.117 3.883 10 C -0.115 4.115 11 C 0.133 3.867 12 N -0.710 5.710 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.112 4.112 16 S -0.179 6.179 17 C -0.527 4.527 18 H 0.063 0.937 19 C 0.044 3.956 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.261 1.261 24 H -0.236 1.236 25 C 0.115 3.885 26 N -0.246 5.246 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.222 0.778 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.418 0.582 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.276 0.724 40 H 0.097 0.903 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 28.856 -3.591 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.040 5.040 3 N -0.141 5.141 4 C -0.155 4.155 5 C -0.228 4.228 6 C 0.415 3.585 7 O -0.443 6.443 8 N -0.369 5.369 9 C -0.004 4.004 10 C -0.134 4.134 11 C 0.009 3.991 12 N -0.364 5.364 13 C 0.321 3.679 14 O -0.442 6.442 15 C -0.263 4.263 16 S 0.048 5.952 17 C -0.674 4.674 18 H 0.081 0.919 19 C -0.162 4.162 20 N -0.556 5.556 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.186 1.186 24 H -0.159 1.159 25 C -0.007 4.007 26 N -0.096 5.096 27 H 0.131 0.869 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.238 0.762 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.508 28.293 -5.052 29.468 hybrid contribution -0.143 0.177 1.172 1.194 sum 6.365 28.470 -3.880 29.429 Atomic orbital electron populations 1.22792 0.66880 1.08068 1.07220 1.48656 1.10692 0.98624 1.46061 1.74050 1.03906 1.16031 1.20127 1.25162 0.94956 0.93586 1.01792 1.22902 0.91384 0.94945 1.13524 1.16355 0.85758 0.80415 0.75973 1.90802 1.25303 1.75150 1.53058 1.49843 1.13028 1.02882 1.71173 1.23373 0.94561 0.79987 1.02511 1.23281 0.96081 0.91551 1.02502 1.21317 0.91399 0.90528 0.95847 1.45676 1.40648 1.12615 1.37433 1.19885 0.82601 0.82225 0.83141 1.90703 1.54185 1.67688 1.31599 1.23283 1.01756 0.97527 1.03729 1.84736 1.50104 1.12813 1.47580 1.22472 1.22812 1.02734 1.19404 0.91859 1.25576 0.94274 0.98407 0.97910 1.70021 1.27842 1.18581 1.39128 0.85864 0.79232 0.80169 0.81093 1.18817 1.18571 1.15932 1.23553 0.90227 0.84714 1.02179 1.74373 1.02715 1.16102 1.16378 0.86928 0.85804 0.85906 0.76179 0.88763 0.87747 0.85545 0.91026 0.90805 0.74486 0.86857 0.86660 0.91453 0.88480 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 11.55 127.77 1.48 1.77 16 2 N -0.14 -1.87 4.34 -206.54 -0.90 -2.76 16 3 N -0.30 -5.02 12.01 -56.16 -0.67 -5.69 16 4 C 0.03 0.48 12.04 85.46 1.03 1.51 16 5 C -0.07 -1.29 7.15 42.24 0.30 -0.99 16 6 C 0.63 13.49 8.06 86.77 0.70 14.19 16 7 O -0.57 -15.52 17.68 -3.91 -0.07 -15.59 16 8 N -0.64 -10.17 3.61 -840.10 -3.03 -13.20 16 9 C 0.12 1.36 8.40 86.48 0.73 2.09 16 10 C -0.11 -1.06 3.94 -10.13 -0.04 -1.10 16 11 C 0.13 1.90 5.53 86.38 0.48 2.38 16 12 N -0.71 -12.78 5.56 -463.05 -2.57 -15.35 16 13 C 0.54 16.17 7.85 87.66 0.69 16.86 16 14 O -0.56 -22.03 15.86 -3.03 -0.05 -22.08 16 15 C -0.11 -3.85 6.16 71.24 0.44 -3.41 16 16 S -0.18 -8.67 18.55 -56.49 -1.05 -9.72 16 17 C -0.53 -29.80 10.04 67.95 0.68 -29.12 16 18 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 19 C 0.04 2.51 5.50 84.86 0.47 2.98 16 20 N -0.92 -55.00 13.97 21.65 0.30 -54.69 16 21 Si 0.91 44.18 27.74 68.60 1.90 46.08 16 22 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 25 C 0.12 1.27 7.50 86.48 0.65 1.92 16 26 N -0.25 -4.08 10.60 -48.17 -0.51 -4.59 16 27 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.22 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.42 4.83 8.47 -92.71 -0.79 4.05 16 37 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 38 H 0.12 3.57 8.14 -2.40 -0.02 3.55 16 39 H 0.28 15.33 8.31 -92.71 -0.77 14.55 16 40 H 0.10 1.02 7.89 -2.38 -0.02 1.00 16 41 H 0.10 1.01 7.54 -2.39 -0.02 0.99 16 Total: -1.00 -83.76 373.97 1.20 -82.56 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.25 Total: 5.97 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 7.60 Total: 9.07 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -7.38 Total: -96.29 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.12 Total: -37.67 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.05 Total: -9.72 kcal Total: -83.76 1.20 -82.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738036815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.503 kcal (2) G-P(sol) polarization free energy of solvation -83.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds