Wall clock time and date at job start Sat Apr 11 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34810 * 126.59107 * 2 1 4 4 C 1.36595 * 106.83920 * 180.12916 * 3 2 1 5 5 C 1.47528 * 125.77263 * 179.89897 * 4 3 2 6 6 O 1.21595 * 119.99800 * 359.71381 * 5 4 3 7 7 N 1.34772 * 119.99937 * 179.72065 * 5 4 3 8 8 C 1.46503 * 119.99877 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47017 * 179.97438 * 8 7 5 10 10 C 1.30999 * 119.99403 * 127.00263 * 9 8 7 11 11 C 1.50693 * 120.00654 * 7.56227 * 10 9 8 12 12 N 1.46498 * 109.47618 * 127.15614 * 11 10 9 13 13 C 1.34771 * 120.00429 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00016 * 359.72470 * 13 12 11 15 15 C 1.50698 * 120.00474 * 179.97438 * 13 12 11 16 16 S 1.80993 * 109.47300 * 180.02562 * 15 13 12 17 17 C 1.76209 * 99.99979 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99615 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00170 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46730 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47051 * 120.00045 * 21 19 17 24 24 H 1.48498 * 109.46929 * 240.00131 * 21 19 17 25 25 N 1.34401 * 108.45798 * 359.63483 * 4 3 2 26 26 N 1.28759 * 109.52264 * 0.23148 * 25 4 3 27 27 H 1.08992 * 109.47405 * 270.24251 * 1 2 3 28 28 H 1.09000 * 109.47161 * 30.24583 * 1 2 3 29 29 H 1.08999 * 109.46767 * 150.24137 * 1 2 3 30 30 H 1.08006 * 126.58409 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00329 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47415 * 59.99549 * 8 7 5 33 33 H 1.08996 * 109.46892 * 299.99217 * 8 7 5 34 34 H 1.07991 * 120.00090 * 307.00306 * 9 8 7 35 35 H 1.08005 * 119.99209 * 187.55778 * 10 9 8 36 36 H 1.09003 * 109.47209 * 7.15149 * 11 10 9 37 37 H 1.09003 * 109.46934 * 247.15273 * 11 10 9 38 38 H 0.97003 * 119.99666 * 359.97438 * 12 11 10 39 39 H 1.08996 * 109.47398 * 300.00588 * 15 13 12 40 40 H 1.09003 * 109.46684 * 59.99985 * 15 13 12 41 41 H 0.97006 * 120.00102 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6208 -0.0029 5 6 4.7704 1.4559 -0.0061 6 8 4.6754 2.6681 -0.0116 7 7 5.9866 0.8752 -0.0032 8 6 7.1943 1.7045 -0.0058 9 6 8.4127 0.8175 -0.0010 10 6 9.3447 0.9802 -0.9070 11 6 9.2853 2.1570 -1.8465 12 7 10.5585 2.8804 -1.8044 13 6 10.7368 3.9758 -2.5691 14 8 9.8449 4.3598 -3.2958 15 6 12.0463 4.7203 -2.5254 16 16 11.9748 6.1335 -3.6539 17 6 13.5866 6.8022 -3.4093 18 1 14.2688 6.3283 -2.7190 19 6 13.9792 7.9384 -4.1030 20 7 13.1476 8.5163 -4.9439 21 14 15.6877 8.6478 -3.8432 22 1 16.4226 7.8188 -2.8544 23 1 16.4245 8.6489 -5.1325 24 1 15.5742 10.0390 -3.3366 25 7 3.5239 -0.7229 0.0034 26 7 2.3009 -1.1257 0.0052 27 1 -0.3634 0.0043 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3633 -0.8922 -0.5101 30 1 1.9560 2.1162 -0.0004 31 1 6.0623 -0.0919 0.0014 32 1 7.2024 2.3373 0.8816 33 1 7.2034 2.3301 -0.8983 34 1 8.5174 0.0479 0.7493 35 1 10.1559 0.2709 -0.9806 36 1 8.4782 2.8239 -1.5429 37 1 9.1019 1.8030 -2.8610 38 1 11.2732 2.5710 -1.2262 39 1 12.2292 5.0746 -1.5110 40 1 12.8536 4.0534 -2.8283 41 1 13.4219 9.3107 -5.4285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738454110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:58 Heat of formation + Delta-G solvation = 50.166706 kcal Electronic energy + Delta-G solvation = -24463.455369 eV Core-core repulsion = 20507.933502 eV Total energy + Delta-G solvation = -3955.521866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.66456 -39.76062 -39.15044 -36.84482 -35.22799 -34.62045 -32.84054 -32.40437 -31.45689 -29.58317 -28.59023 -27.00216 -25.58188 -25.11068 -23.60773 -22.69787 -20.91910 -20.40571 -19.60591 -18.37014 -17.67651 -17.03683 -16.75869 -16.57396 -16.24555 -15.85498 -15.50342 -15.20418 -15.06399 -14.78493 -14.65512 -14.29196 -13.89018 -13.87563 -13.71387 -13.63572 -13.09893 -13.01618 -12.63095 -12.58463 -12.45939 -11.80120 -11.78204 -11.15902 -11.05112 -10.99556 -10.91595 -10.73880 -10.56837 -9.89173 -9.80105 -9.77674 -9.38287 -9.27066 -9.05312 -8.76222 -8.20156 -6.47221 -6.19449 -3.89774 0.64542 1.27148 1.45434 1.58503 2.91211 2.94718 3.12256 3.13315 3.23396 3.30919 3.37310 3.75806 3.82045 3.84675 4.22494 4.27725 4.34886 4.36037 4.49425 4.61369 4.65301 4.86675 4.91806 5.15789 5.17710 5.22571 5.29526 5.50040 5.56919 5.58397 5.78833 5.79587 5.92008 6.02071 6.14979 6.16754 6.32824 6.63396 7.08731 7.47129 7.62140 7.72856 7.84640 8.37737 8.63587 9.25987 10.88040 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.001494 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.555498 B =18738.299615 C =19422.804441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.364 5.364 3 C 0.096 3.904 4 C -0.102 4.102 5 C 0.604 3.396 6 O -0.532 6.532 7 N -0.710 5.710 8 C 0.134 3.866 9 C -0.163 4.163 10 C -0.141 4.141 11 C 0.133 3.867 12 N -0.735 5.735 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.205 5.205 26 N -0.065 5.065 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.207 0.793 31 H 0.409 0.591 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.375 -21.456 14.089 34.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.148 5.148 3 C -0.061 4.061 4 C -0.242 4.242 5 C 0.388 3.612 6 O -0.408 6.408 7 N -0.361 5.361 8 C 0.011 3.989 9 C -0.182 4.182 10 C -0.160 4.160 11 C 0.010 3.990 12 N -0.390 5.390 13 C 0.317 3.683 14 O -0.390 6.390 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.079 5.079 26 N -0.046 5.046 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.224 0.776 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.974 -21.296 12.736 34.503 hybrid contribution 2.263 0.339 1.324 2.643 sum -21.711 -20.957 14.060 33.291 Atomic orbital electron populations 1.22243 0.72249 1.06034 1.04938 1.50392 1.09291 1.05650 1.49481 1.23436 0.90107 0.95161 0.97376 1.21447 0.94597 0.90400 1.17712 1.16725 0.81702 0.86328 0.76472 1.90866 1.86545 1.12985 1.50393 1.45684 1.04752 1.11075 1.74635 1.20640 0.81365 0.92827 1.04031 1.22842 0.95685 1.01130 0.98531 1.23024 1.00105 0.97725 0.95181 1.20500 0.87470 0.91710 0.99334 1.45937 1.16552 1.29595 1.46889 1.20336 0.89418 0.79602 0.78941 1.90714 1.43638 1.66021 1.38651 1.23526 0.96554 1.03688 1.06569 1.85422 1.20886 1.24906 1.52180 1.22914 0.99899 1.15291 1.30205 0.90866 1.24991 0.98314 0.95780 0.94504 1.70033 1.35210 1.19916 1.25129 0.86116 0.82388 0.78819 0.78165 1.19619 1.20590 1.20574 1.74613 1.13073 1.10234 1.10002 1.82013 0.93409 1.06467 1.22703 0.89057 0.88156 0.87934 0.77593 0.75555 0.90117 0.89283 0.85832 0.85763 0.90155 0.90616 0.76706 0.89163 0.89176 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.07 11.51 59.85 0.69 0.76 16 2 N -0.36 -2.13 4.03 -67.86 -0.27 -2.40 16 3 C 0.10 0.64 11.31 -16.84 -0.19 0.45 16 4 C -0.10 -0.96 6.99 -83.55 -0.58 -1.55 16 5 C 0.60 6.59 7.82 -12.47 -0.10 6.49 16 6 O -0.53 -7.41 16.86 5.28 0.09 -7.32 16 7 N -0.71 -6.40 5.55 -62.53 -0.35 -6.75 16 8 C 0.13 1.22 5.76 -5.19 -0.03 1.19 16 9 C -0.16 -1.15 9.63 -36.02 -0.35 -1.50 16 10 C -0.14 -1.10 9.63 -36.03 -0.35 -1.45 16 11 C 0.13 1.55 5.76 -5.20 -0.03 1.52 16 12 N -0.73 -9.77 5.55 -61.48 -0.34 -10.11 16 13 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 14 O -0.52 -11.96 15.86 5.55 0.09 -11.87 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 N -0.21 -2.05 12.04 32.85 0.40 -1.65 16 26 N -0.07 -0.60 13.78 60.35 0.83 0.23 16 27 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.21 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.41 3.02 8.15 -40.82 -0.33 2.68 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.98 5.30 -51.93 -0.28 0.70 16 34 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.08 1.03 5.30 -51.93 -0.28 0.75 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.04 8.46 -40.82 -0.35 3.70 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -39.69 380.23 -5.93 -45.62 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.00 Total: 1.59 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.60 Total: -0.07 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 1.00 Total: -46.32 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.69 -5.93 -45.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738454110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.791 kcal (2) G-P(sol) polarization free energy of solvation -39.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds