Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34810 * 126.59107 * 2 1 4 4 C 1.36595 * 106.83920 * 180.12916 * 3 2 1 5 5 C 1.47528 * 125.77263 * 179.89897 * 4 3 2 6 6 O 1.21595 * 119.99800 * 359.71381 * 5 4 3 7 7 N 1.34772 * 119.99937 * 179.72065 * 5 4 3 8 8 C 1.46503 * 119.99877 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.47017 * 179.97438 * 8 7 5 10 10 C 1.30999 * 119.99403 * 127.00263 * 9 8 7 11 11 C 1.50693 * 120.00654 * 7.56227 * 10 9 8 12 12 N 1.46498 * 109.47618 * 127.15614 * 11 10 9 13 13 C 1.34771 * 120.00429 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00016 * 359.72470 * 13 12 11 15 15 C 1.50698 * 120.00474 * 179.97438 * 13 12 11 16 16 S 1.80993 * 109.47300 * 180.02562 * 15 13 12 17 17 C 1.76209 * 99.99979 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99615 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00170 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00047 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46730 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47051 * 120.00045 * 21 19 17 24 24 H 1.48498 * 109.46929 * 240.00131 * 21 19 17 25 25 N 1.34401 * 108.45798 * 359.63483 * 4 3 2 26 26 N 1.28759 * 109.52264 * 0.23148 * 25 4 3 27 27 H 1.08992 * 109.47405 * 270.24251 * 1 2 3 28 28 H 1.09000 * 109.47161 * 30.24583 * 1 2 3 29 29 H 1.08999 * 109.46767 * 150.24137 * 1 2 3 30 30 H 1.08006 * 126.58409 * 359.97438 * 3 2 1 31 31 H 0.96998 * 120.00329 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47415 * 59.99549 * 8 7 5 33 33 H 1.08996 * 109.46892 * 299.99217 * 8 7 5 34 34 H 1.07991 * 120.00090 * 307.00306 * 9 8 7 35 35 H 1.08005 * 119.99209 * 187.55778 * 10 9 8 36 36 H 1.09003 * 109.47209 * 7.15149 * 11 10 9 37 37 H 1.09003 * 109.46934 * 247.15273 * 11 10 9 38 38 H 0.97003 * 119.99666 * 359.97438 * 12 11 10 39 39 H 1.08996 * 109.47398 * 300.00588 * 15 13 12 40 40 H 1.09003 * 109.46684 * 59.99985 * 15 13 12 41 41 H 0.97006 * 120.00102 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6208 -0.0029 5 6 4.7704 1.4559 -0.0061 6 8 4.6754 2.6681 -0.0116 7 7 5.9866 0.8752 -0.0032 8 6 7.1943 1.7045 -0.0058 9 6 8.4127 0.8175 -0.0010 10 6 9.3447 0.9802 -0.9070 11 6 9.2853 2.1570 -1.8465 12 7 10.5585 2.8804 -1.8044 13 6 10.7368 3.9758 -2.5691 14 8 9.8449 4.3598 -3.2958 15 6 12.0463 4.7203 -2.5254 16 16 11.9748 6.1335 -3.6539 17 6 13.5866 6.8022 -3.4093 18 1 14.2688 6.3283 -2.7190 19 6 13.9792 7.9384 -4.1030 20 7 13.1476 8.5163 -4.9439 21 14 15.6877 8.6478 -3.8432 22 1 16.4226 7.8188 -2.8544 23 1 16.4245 8.6489 -5.1325 24 1 15.5742 10.0390 -3.3366 25 7 3.5239 -0.7229 0.0034 26 7 2.3009 -1.1257 0.0052 27 1 -0.3634 0.0043 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3633 -0.8922 -0.5101 30 1 1.9560 2.1162 -0.0004 31 1 6.0623 -0.0919 0.0014 32 1 7.2024 2.3373 0.8816 33 1 7.2034 2.3301 -0.8983 34 1 8.5174 0.0479 0.7493 35 1 10.1559 0.2709 -0.9806 36 1 8.4782 2.8239 -1.5429 37 1 9.1019 1.8030 -2.8610 38 1 11.2732 2.5710 -1.2262 39 1 12.2292 5.0746 -1.5110 40 1 12.8536 4.0534 -2.8283 41 1 13.4219 9.3107 -5.4285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738454110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = 17.367548 kcal Electronic energy + Delta-G solvation = -24464.877647 eV Core-core repulsion = 20507.933502 eV Total energy + Delta-G solvation = -3956.944145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.24453 -40.73246 -40.43507 -37.75731 -35.85805 -35.51748 -34.57515 -33.84514 -32.09164 -31.02913 -29.00706 -27.91113 -27.56371 -26.14505 -24.29467 -23.19145 -21.86789 -21.60519 -20.43559 -19.76225 -18.87749 -17.93047 -17.71028 -17.30209 -17.18250 -16.87560 -16.73476 -16.67459 -16.31038 -15.80471 -15.64967 -15.51391 -14.94746 -14.76989 -14.51450 -14.36962 -14.21686 -13.99570 -13.93820 -13.48237 -13.17836 -13.15490 -13.13761 -12.90069 -12.58329 -12.33505 -11.93572 -11.69467 -11.43156 -11.35496 -11.14910 -11.06727 -10.54061 -10.42334 -10.25611 -10.22850 -9.80382 -8.65876 -8.33687 -6.11925 0.11813 0.55267 0.81290 1.16214 1.30653 1.42531 1.49909 1.60688 1.61684 2.17248 2.19361 2.28162 2.47223 3.00650 3.15880 3.34335 3.47800 3.63629 3.87246 3.92606 3.96091 4.04425 4.12134 4.31582 4.36939 4.41929 4.46921 4.52714 4.65611 4.68510 4.71012 4.77614 4.95550 5.25066 5.37488 5.41256 5.43313 5.48874 5.71957 6.21234 6.35034 6.52542 6.84867 7.07462 7.07704 7.25450 8.75899 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.001494 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.555498 B =18738.299615 C =19422.804441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.351 5.351 3 C 0.108 3.892 4 C -0.127 4.127 5 C 0.602 3.398 6 O -0.571 6.571 7 N -0.701 5.701 8 C 0.130 3.870 9 C -0.143 4.143 10 C -0.139 4.139 11 C 0.130 3.870 12 N -0.706 5.706 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.156 6.156 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 N -0.222 5.222 26 N -0.092 5.092 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.235 0.765 31 H 0.418 0.582 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.788 -23.167 16.049 35.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.135 5.135 3 C -0.051 4.051 4 C -0.268 4.268 5 C 0.387 3.613 6 O -0.450 6.450 7 N -0.352 5.352 8 C 0.007 3.993 9 C -0.162 4.162 10 C -0.158 4.158 11 C 0.007 3.993 12 N -0.361 5.361 13 C 0.317 3.683 14 O -0.447 6.447 15 C -0.279 4.279 16 S 0.072 5.928 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.200 1.200 25 N -0.095 5.095 26 N -0.073 5.073 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.251 0.749 31 H 0.255 0.745 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.389 -23.112 14.744 36.035 hybrid contribution 1.886 0.771 0.780 2.182 sum -21.502 -22.341 15.524 34.676 Atomic orbital electron populations 1.22742 0.69270 1.07820 1.06696 1.50721 1.10769 1.04526 1.47483 1.23872 0.89319 0.96361 0.95534 1.21432 0.95059 0.90436 1.19831 1.16987 0.82567 0.86030 0.75756 1.90836 1.87155 1.14530 1.52466 1.45639 1.04347 1.11510 1.73672 1.20618 0.82569 0.93321 1.02763 1.22945 0.93961 1.00744 0.98567 1.22929 1.01662 0.96843 0.94396 1.20587 0.85920 0.92809 1.00016 1.45659 1.17793 1.27518 1.45107 1.20137 0.88288 0.80670 0.79214 1.90702 1.44960 1.67794 1.41218 1.23365 0.98292 1.00951 1.05326 1.85629 1.22080 1.29458 1.55672 1.23246 0.99834 1.15725 1.30464 0.89782 1.26141 1.03079 0.96083 0.93885 1.70200 1.37758 1.20578 1.26355 0.84888 0.76405 0.78012 0.78525 1.17912 1.19952 1.19987 1.74567 1.13825 1.10521 1.10631 1.81917 0.93614 1.07952 1.23778 0.87241 0.85382 0.87206 0.74888 0.74483 0.90565 0.91548 0.82673 0.82832 0.91634 0.91753 0.74342 0.87071 0.86903 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.06 11.51 127.77 1.47 1.41 16 2 N -0.35 -3.61 4.03 -368.59 -1.49 -5.09 16 3 C 0.11 1.31 11.31 83.85 0.95 2.26 16 4 C -0.13 -2.39 6.99 40.82 0.29 -2.10 16 5 C 0.60 13.42 7.82 86.69 0.68 14.09 16 6 O -0.57 -16.49 16.86 -4.01 -0.07 -16.55 16 7 N -0.70 -12.54 5.55 -470.00 -2.61 -15.15 16 8 C 0.13 2.34 5.76 85.63 0.49 2.83 16 9 C -0.14 -1.68 9.63 25.65 0.25 -1.43 16 10 C -0.14 -1.81 9.63 25.65 0.25 -1.57 16 11 C 0.13 2.92 5.76 85.63 0.49 3.42 16 12 N -0.71 -17.73 5.55 -466.80 -2.59 -20.32 16 13 C 0.53 19.98 7.85 87.66 0.69 20.67 16 14 O -0.57 -27.27 15.86 -3.05 -0.05 -27.32 16 15 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 16 S -0.16 -8.77 20.57 -56.49 -1.16 -9.94 16 17 C -0.54 -31.36 9.50 67.95 0.65 -30.72 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.73 5.49 84.86 0.47 1.19 16 20 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 21 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 N -0.22 -4.41 12.04 -49.99 -0.60 -5.01 16 26 N -0.09 -1.64 13.78 37.02 0.51 -1.13 16 27 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.42 5.88 8.15 -92.71 -0.76 5.12 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.53 5.30 -2.39 -0.01 1.52 16 34 H 0.16 0.97 8.06 -2.92 -0.02 0.95 16 35 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.07 1.73 5.30 -2.39 -0.01 1.72 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 7.22 8.46 -92.71 -0.78 6.44 16 39 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 40 H 0.11 3.98 8.14 -2.39 -0.02 3.97 16 41 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 Total: -1.00 -91.16 380.23 0.92 -90.24 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.44 Total: 15.33 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 7.10 Total: 5.39 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -6.49 Total: -103.08 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.12 Total: -43.87 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -91.16 0.92 -90.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738454110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.605 kcal (2) G-P(sol) polarization free energy of solvation -91.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds