Wall clock time and date at job start Sat Apr 11 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28520 * 124.44276 * 2 1 4 4 C 1.31130 * 109.05752 * 179.97438 * 3 2 1 5 5 C 1.40925 * 105.77841 * 359.97438 * 4 3 2 6 6 C 1.47806 * 127.24005 * 179.97438 * 5 4 3 7 7 O 1.21560 * 119.99604 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00040 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99611 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46831 * 174.96827 * 9 8 6 11 11 N 1.46495 * 115.54715 * 85.77478 * 10 9 8 12 12 C 1.34779 * 120.00375 * 65.40694 * 11 10 9 13 13 O 1.21283 * 119.99626 * 354.97760 * 12 11 10 14 14 C 1.50700 * 120.00262 * 174.97499 * 12 11 10 15 15 S 1.81006 * 109.46951 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99846 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00231 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00450 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47294 * 89.99398 * 20 18 16 22 22 H 1.48497 * 109.47047 * 210.00145 * 20 18 16 23 23 H 1.48502 * 109.46965 * 329.99758 * 20 18 16 24 24 C 1.52993 * 117.49722 * 231.44326 * 10 9 8 25 25 C 1.52997 * 117.49928 * 300.10289 * 10 9 8 26 26 N 1.28591 * 124.44245 * 180.28975 * 2 1 3 27 27 H 1.08993 * 109.46964 * 90.02725 * 1 2 3 28 28 H 1.09007 * 109.46987 * 210.02900 * 1 2 3 29 29 H 1.08999 * 109.46920 * 330.02416 * 1 2 3 30 30 H 1.08005 * 127.11446 * 180.02562 * 4 3 2 31 31 H 0.96999 * 120.00486 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47545 * 54.97056 * 9 8 6 33 33 H 1.08996 * 109.46839 * 294.96726 * 9 8 6 34 34 H 0.97002 * 119.99938 * 245.40447 * 11 10 9 35 35 H 1.08999 * 109.47302 * 300.00003 * 14 12 11 36 36 H 1.08998 * 109.46945 * 60.00407 * 14 12 11 37 37 H 0.97004 * 119.99765 * 180.02562 * 19 18 16 38 38 H 1.09005 * 117.49813 * 215.00448 * 24 10 9 39 39 H 1.08997 * 117.50305 * 0.02987 * 24 10 9 40 40 H 1.08999 * 117.49998 * 359.97438 * 25 10 9 41 41 H 1.09000 * 117.49970 * 144.97302 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0006 5 6 3.4659 -0.6972 0.0015 6 6 4.6487 -1.5836 0.0019 7 8 5.7664 -1.1055 0.0018 8 7 4.4880 -2.9217 0.0023 9 6 5.6605 -3.8002 0.0033 10 6 5.2069 -5.2559 0.1301 11 7 4.8580 -5.9209 -1.1278 12 6 5.8071 -6.1426 -2.0587 13 8 6.9290 -5.7117 -1.8954 14 6 5.4744 -6.9260 -3.3023 15 16 6.9467 -7.0522 -4.3477 16 6 6.2901 -7.9868 -5.6893 17 1 5.2549 -8.2949 -5.6773 18 6 7.1033 -8.3281 -6.7611 19 7 8.3650 -7.9531 -6.7754 20 14 6.4074 -9.3196 -8.1831 21 1 5.8628 -8.3962 -9.2107 22 1 7.4841 -10.1481 -8.7826 23 1 5.3218 -10.2028 -7.6862 24 6 5.8593 -6.1066 1.2216 25 6 4.4095 -5.6412 1.3777 26 7 2.1923 -1.0605 -0.0054 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.3131 1.3695 0.0011 31 1 3.5962 -3.3032 0.0028 32 1 6.3046 -3.5457 0.8450 33 1 6.2118 -3.6712 -0.9281 34 1 3.9440 -6.2016 -1.2907 35 1 5.1404 -7.9254 -3.0237 36 1 4.6815 -6.4175 -3.8507 37 1 8.9332 -8.1913 -7.5246 38 1 6.0291 -7.1611 1.0038 39 1 6.6114 -5.6291 1.8497 40 1 4.2084 -4.8578 2.1084 41 1 3.6250 -6.3892 1.2625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738946016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:03 Heat of formation + Delta-G solvation = 39.598829 kcal Electronic energy + Delta-G solvation = -25822.430045 eV Core-core repulsion = 21866.449921 eV Total energy + Delta-G solvation = -3955.980124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.73351 -41.27317 -40.36985 -38.47998 -35.44582 -34.78734 -34.58961 -34.01703 -33.69213 -30.56687 -29.47105 -28.02386 -27.65285 -24.90118 -23.68598 -23.13527 -22.58556 -21.54491 -20.86170 -19.84623 -19.10319 -18.07296 -18.03966 -17.80251 -17.54255 -16.88325 -16.84719 -16.41607 -16.30479 -15.91946 -15.78113 -15.51273 -14.98514 -14.75893 -14.54326 -14.09574 -13.80590 -13.65135 -13.63916 -13.42091 -13.16671 -13.05485 -12.89912 -12.61151 -12.44045 -12.17556 -11.96902 -11.75723 -11.63790 -11.57656 -11.32337 -11.14709 -10.83529 -10.55831 -10.27038 -10.19037 -10.09453 -8.66587 -8.34867 -6.12810 0.14933 0.83392 1.22612 1.25460 1.41944 1.45857 1.56078 1.61217 1.88175 2.08705 2.15163 2.27351 2.73230 2.88055 2.99242 3.30030 3.46935 3.68637 3.80328 3.87617 3.96291 4.00573 4.29279 4.30536 4.31876 4.45949 4.46319 4.51632 4.57135 4.67108 4.73658 4.82019 4.90020 4.99258 5.16474 5.21520 5.41309 5.50303 5.52896 6.19365 6.31344 6.50322 6.94931 7.04054 7.06343 7.27058 8.74268 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.002298 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.691135 B =12184.041010 C =13114.973705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.132 5.132 3 N -0.299 5.299 4 C 0.028 3.972 5 C -0.067 4.067 6 C 0.607 3.393 7 O -0.564 6.564 8 N -0.694 5.694 9 C 0.157 3.843 10 C 0.063 3.937 11 N -0.682 5.682 12 C 0.536 3.464 13 O -0.552 6.552 14 C -0.128 4.128 15 S -0.152 6.152 16 C -0.545 4.545 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.257 1.257 24 C -0.169 4.169 25 C -0.123 4.123 26 N -0.246 5.246 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.220 0.780 31 H 0.418 0.582 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.419 0.581 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.628 11.172 19.975 32.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.037 5.037 3 N -0.139 5.139 4 C -0.155 4.155 5 C -0.228 4.228 6 C 0.391 3.609 7 O -0.441 6.441 8 N -0.345 5.345 9 C 0.032 3.968 10 C -0.025 4.025 11 N -0.337 5.337 12 C 0.322 3.678 13 O -0.429 6.429 14 C -0.280 4.280 15 S 0.075 5.925 16 C -0.693 4.693 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.180 1.180 24 C -0.207 4.207 25 C -0.160 4.160 26 N -0.097 5.097 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.236 0.764 31 H 0.255 0.745 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.258 0.742 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.185 12.185 20.159 31.681 hybrid contribution -0.759 -1.174 -1.498 2.049 sum -21.944 11.010 18.661 30.838 Atomic orbital electron populations 1.22833 0.66666 1.08335 1.07186 1.48663 1.10747 0.98509 1.45814 1.74051 1.03774 1.15943 1.20163 1.25143 0.95018 0.93646 1.01674 1.22817 0.91266 0.95024 1.13647 1.16839 0.86008 0.81999 0.76091 1.90829 1.25418 1.76039 1.51768 1.45668 1.10952 1.04499 1.73427 1.20919 0.87110 0.86337 1.02414 1.20693 1.09452 0.90828 0.81564 1.45063 1.12059 1.60793 1.15753 1.20089 0.84777 0.78965 0.83938 1.90709 1.23311 1.50776 1.78102 1.23364 1.03860 1.03688 0.97056 1.85634 1.14378 1.72224 1.20229 1.23200 0.99909 1.39699 1.06506 0.89876 1.26146 0.94896 0.97039 1.01220 1.70193 1.06899 1.45331 1.32390 0.84949 0.78114 0.77906 0.76981 1.19412 1.20334 1.18043 1.23449 0.97611 1.00266 0.99404 1.23490 0.94632 1.03683 0.94195 1.74297 1.02483 1.16310 1.16568 0.87175 0.85404 0.85620 0.76383 0.74513 0.89758 0.93411 0.74225 0.87038 0.87487 0.92030 0.88509 0.87363 0.85757 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.55 127.77 1.48 1.74 16 2 N -0.13 -1.94 4.35 -206.54 -0.90 -2.84 16 3 N -0.30 -5.48 12.01 -56.16 -0.67 -6.15 16 4 C 0.03 0.56 12.04 85.46 1.03 1.59 16 5 C -0.07 -1.47 7.21 42.24 0.30 -1.16 16 6 C 0.61 15.82 7.83 86.78 0.68 16.50 16 7 O -0.56 -18.97 16.95 -3.90 -0.07 -19.03 16 8 N -0.69 -14.92 5.44 -466.00 -2.54 -17.45 16 9 C 0.16 4.01 5.63 86.38 0.49 4.49 16 10 C 0.06 1.28 1.79 3.60 0.01 1.29 16 11 N -0.68 -15.84 5.45 -422.93 -2.31 -18.15 16 12 C 0.54 19.18 7.66 87.66 0.67 19.86 16 13 O -0.55 -25.16 14.64 -3.04 -0.04 -25.21 16 14 C -0.13 -4.98 6.16 71.24 0.44 -4.55 16 15 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 16 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.67 5.49 84.86 0.47 1.13 16 19 N -0.91 -56.47 13.22 21.65 0.29 -56.19 16 20 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.17 -3.08 10.11 30.62 0.31 -2.77 16 25 C -0.12 -1.37 9.94 30.62 0.30 -1.07 16 26 N -0.25 -4.42 11.84 -48.16 -0.57 -5.00 16 27 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.13 -0.13 8.14 -2.38 -0.02 -0.15 16 29 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.22 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.42 6.75 8.14 -92.71 -0.75 5.99 16 32 H 0.08 2.13 7.89 -2.39 -0.02 2.11 16 33 H 0.05 1.69 6.83 -2.39 -0.02 1.67 16 34 H 0.42 6.55 8.83 -92.71 -0.82 5.73 16 35 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 36 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 37 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.11 1.89 8.05 -2.39 -0.02 1.87 16 40 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -87.95 379.31 0.39 -87.56 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.48 Total: 19.80 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.82 Total: 6.56 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -6.70 Total: -105.78 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.11 Total: -44.24 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -87.95 0.39 -87.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738946016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.158 kcal (2) G-P(sol) polarization free energy of solvation -87.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds