Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00295 * 2 1 4 4 C 1.52995 * 109.47101 * 275.46831 * 3 2 1 5 5 H 1.09006 * 112.96441 * 66.82765 * 4 3 2 6 6 C 1.53947 * 113.77169 * 295.15037 * 4 3 2 7 7 C 1.53946 * 86.28732 * 222.08982 * 6 4 3 8 8 N 1.47576 * 113.77056 * 198.64947 * 4 3 2 9 9 C 1.34774 * 134.49429 * 318.94688 * 8 4 3 10 10 O 1.21284 * 119.99873 * 5.00052 * 9 8 4 11 11 C 1.50701 * 120.00069 * 185.00366 * 9 8 4 12 12 S 1.81003 * 109.47023 * 179.97438 * 11 9 8 13 13 C 1.76199 * 99.99961 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00078 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31629 * 120.00196 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99862 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46608 * 90.00553 * 17 15 13 19 19 H 1.48501 * 109.47184 * 210.00119 * 17 15 13 20 20 H 1.48491 * 109.47340 * 330.00945 * 17 15 13 21 21 C 1.34779 * 120.00007 * 179.97438 * 2 1 3 22 22 O 1.21556 * 120.00337 * 174.58395 * 21 2 1 23 23 C 1.47877 * 119.99943 * 354.86828 * 21 2 1 24 24 N 1.34551 * 126.04728 * 4.53053 * 23 21 2 25 25 C 1.30862 * 107.26815 * 179.83962 * 24 23 21 26 26 N 1.34588 * 107.62706 * 0.41974 * 25 24 23 27 27 H 0.97003 * 125.75180 * 179.76052 * 26 25 24 28 28 N 1.28853 * 108.50180 * 359.73585 * 26 25 24 29 29 H 1.09009 * 109.46933 * 244.43608 * 1 2 3 30 30 H 1.08999 * 109.47513 * 4.43119 * 1 2 3 31 31 H 1.08996 * 109.47215 * 124.44104 * 1 2 3 32 32 H 1.08995 * 109.46625 * 35.46871 * 3 2 1 33 33 H 1.09007 * 109.46929 * 155.46823 * 3 2 1 34 34 H 1.09004 * 113.73781 * 336.43298 * 6 4 3 35 35 H 1.08997 * 113.74392 * 107.63866 * 6 4 3 36 36 H 1.09002 * 113.77083 * 137.90327 * 7 6 4 37 37 H 1.08997 * 113.77265 * 269.19239 * 7 6 4 38 38 H 1.08998 * 109.47040 * 299.99831 * 11 9 8 39 39 H 1.08996 * 109.47392 * 59.99993 * 11 9 8 40 40 H 0.97003 * 119.99992 * 179.97438 * 16 15 13 41 41 H 1.08000 * 126.18878 * 180.15521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3335 1.7791 -1.4359 5 1 1.3788 2.0641 -1.8782 6 6 3.1893 0.8719 -2.3385 7 6 3.8078 2.1705 -2.8872 8 7 3.3971 2.7870 -1.6107 9 6 3.8227 3.8454 -0.8930 10 8 3.3401 4.0730 0.1962 11 6 4.8981 4.7461 -1.4438 12 16 5.2472 6.0657 -0.2551 13 6 6.5007 6.9419 -1.1300 14 1 6.8193 6.5998 -2.1036 15 6 7.0794 8.0712 -0.5676 16 7 8.0154 8.7261 -1.2215 17 14 6.5288 8.6624 1.1167 18 1 7.3618 8.0183 2.1639 19 1 6.6837 10.1371 1.1986 20 1 5.1037 8.3018 1.3264 21 6 2.1388 -1.1672 0.0005 22 8 3.3503 -1.1697 -0.0988 23 6 1.4039 -2.4453 0.1156 24 7 0.0664 -2.5901 0.1400 25 6 -0.1838 -3.8700 0.2474 26 7 0.9972 -4.5133 0.2987 27 1 1.1171 -5.4723 0.3818 28 7 1.9419 -3.6408 0.2182 29 1 -0.3633 -0.4435 0.9271 30 1 -0.3634 1.0246 -0.0794 31 1 -0.3633 -0.5812 -0.8475 32 1 1.6543 2.0018 0.5963 33 1 3.1889 1.1158 0.4267 34 1 3.8946 0.2473 -1.7903 35 1 2.6108 0.3141 -3.0748 36 1 4.8881 2.1195 -3.0229 37 1 3.2883 2.5710 -3.7577 38 1 5.8038 4.1655 -1.6190 39 1 4.5597 5.1838 -2.3829 40 1 8.4196 9.5155 -0.8285 41 1 -1.1613 -4.3272 0.2916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739802716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = 75.885065 kcal Electronic energy + Delta-G solvation = -26394.769027 eV Core-core repulsion = 22440.362392 eV Total energy + Delta-G solvation = -3954.406635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.95837 -40.60790 -39.41155 -37.37648 -35.82955 -33.97716 -32.39930 -31.91751 -30.84913 -29.27329 -28.08295 -26.97346 -25.57526 -25.10300 -23.40459 -23.04527 -21.79568 -20.12566 -19.03507 -18.87297 -17.67320 -17.08271 -16.95164 -16.83031 -16.56260 -16.02887 -15.64196 -15.07247 -14.88312 -14.81996 -14.17852 -13.98704 -13.83365 -13.39709 -13.14387 -12.98536 -12.79331 -12.74114 -12.38245 -12.25277 -11.98933 -11.79845 -11.52533 -11.22035 -11.21566 -10.97140 -10.88381 -10.82382 -10.56325 -10.42882 -10.23323 -9.81352 -9.37664 -9.01944 -8.96160 -8.50126 -8.45190 -6.87145 -6.24895 -3.96196 0.94073 1.61838 1.99203 2.46096 2.79413 2.97755 3.02615 3.20830 3.36906 3.53929 3.56589 3.64275 4.08972 4.26373 4.33577 4.37167 4.60539 4.80350 4.91430 4.95345 5.01871 5.13406 5.14309 5.29131 5.35926 5.42906 5.46326 5.52308 5.62602 5.69694 5.78824 5.80581 5.83829 6.01882 6.09489 6.13347 6.19901 6.33339 6.97607 7.44047 7.82361 7.85126 7.98245 8.45981 8.49936 9.21301 10.84331 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029024 B = 0.002140 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.476436 B =13079.332003 C =13305.777276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.593 5.593 3 C 0.118 3.882 4 C 0.122 3.878 5 H 0.092 0.908 6 C -0.149 4.149 7 C 0.103 3.897 8 N -0.641 5.641 9 C 0.554 3.446 10 O -0.518 6.518 11 C -0.116 4.116 12 S -0.142 6.142 13 C -0.520 4.520 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.881 5.881 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.235 1.235 21 C 0.612 3.388 22 O -0.509 6.509 23 C 0.152 3.848 24 N -0.480 5.480 25 C 0.195 3.805 26 N -0.401 5.401 27 H 0.453 0.547 28 N -0.248 5.248 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.076 -29.249 -1.513 36.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.327 5.327 3 C -0.005 4.005 4 C 0.017 3.983 5 H 0.110 0.890 6 C -0.187 4.187 7 C -0.020 4.020 8 N -0.381 5.381 9 C 0.344 3.656 10 O -0.393 6.393 11 C -0.266 4.266 12 S 0.084 5.916 13 C -0.667 4.667 14 H 0.106 0.894 15 C -0.114 4.114 16 N -0.517 5.517 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.159 1.159 21 C 0.395 3.605 22 O -0.381 6.381 23 C -0.129 4.129 24 N -0.207 5.207 25 C -0.103 4.103 26 N -0.123 5.123 27 H 0.299 0.701 28 N -0.087 5.087 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -20.465 -28.203 0.148 34.846 hybrid contribution 0.178 -0.619 -0.673 0.932 sum -20.288 -28.822 -0.525 35.250 Atomic orbital electron populations 1.21955 0.77651 1.02320 1.03381 1.47462 1.07996 1.04803 1.72454 1.21703 0.99295 0.83281 0.96206 1.23104 0.92786 0.86201 0.96182 0.88997 1.23704 0.99697 0.96367 0.98953 1.23132 1.01546 0.90154 0.87166 1.50073 1.35492 1.28850 1.23657 1.20017 0.82830 0.78381 0.84381 1.90688 1.57931 1.70602 1.20088 1.23220 0.99433 0.99842 1.04140 1.84748 1.51592 1.28364 1.26900 1.22315 1.22511 1.14520 1.07394 0.89408 1.24715 0.93723 0.95050 0.97870 1.69942 1.25012 1.18554 1.38235 0.86727 0.82191 0.78733 0.84149 1.19204 1.19983 1.15923 1.16309 0.85685 0.80991 0.77535 1.90847 1.12677 1.86062 1.48489 1.23775 0.88127 0.93585 1.07382 1.71569 1.13554 1.15774 1.19820 1.26730 0.93803 0.88775 1.00967 1.45296 1.04386 1.11371 1.51294 0.70054 1.74408 1.16953 0.99213 1.18161 0.91302 0.90927 0.90851 0.88819 0.88550 0.87469 0.90460 0.89696 0.89794 0.88661 0.88620 0.91980 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 9.05 59.84 0.54 1.23 16 2 N -0.59 -6.37 2.79 -182.68 -0.51 -6.88 16 3 C 0.12 1.49 4.72 -4.04 -0.02 1.47 16 4 C 0.12 1.44 4.54 -66.87 -0.30 1.14 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 6 C -0.15 -1.59 7.21 -25.80 -0.19 -1.77 16 7 C 0.10 1.13 8.61 -2.97 -0.03 1.11 16 8 N -0.64 -9.44 3.49 -171.18 -0.60 -10.04 16 9 C 0.55 10.65 7.99 -10.99 -0.09 10.56 16 10 O -0.52 -11.53 15.90 5.55 0.09 -11.44 16 11 C -0.12 -2.40 5.91 36.01 0.21 -2.19 16 12 S -0.14 -3.73 18.55 -107.50 -1.99 -5.73 16 13 C -0.52 -15.35 10.04 30.94 0.31 -15.04 16 14 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 15 C 0.09 2.83 5.50 -17.43 -0.10 2.74 16 16 N -0.88 -27.03 13.97 55.49 0.78 -26.25 16 17 Si 0.86 22.24 27.74 -169.99 -4.71 17.52 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 21 C 0.61 7.70 7.31 -12.31 -0.09 7.61 16 22 O -0.51 -8.01 14.72 5.32 0.08 -7.93 16 23 C 0.15 1.60 7.71 -156.35 -1.21 0.39 16 24 N -0.48 -3.60 8.00 -12.36 -0.10 -3.70 16 25 C 0.19 0.66 13.14 -90.49 -1.19 -0.53 16 26 N -0.40 -1.67 6.93 29.56 0.20 -1.46 16 27 H 0.45 -0.07 8.96 -190.21 -1.71 -1.77 16 28 N -0.25 -2.40 12.30 32.08 0.39 -2.01 16 29 H 0.07 0.53 7.37 -51.92 -0.38 0.14 16 30 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 31 H 0.07 0.52 7.18 -51.93 -0.37 0.15 16 32 H 0.09 1.21 8.02 -51.93 -0.42 0.79 16 33 H 0.10 1.49 7.34 -51.93 -0.38 1.11 16 34 H 0.11 1.38 6.31 -51.93 -0.33 1.06 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 39 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 40 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.23 -0.45 8.06 -52.49 -0.42 -0.87 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -39.97 363.41 -9.57 -49.54 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -6.53 Total: -3.81 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.14 Total: 6.71 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.17 Total: -50.34 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.97 -9.57 -49.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739802716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.424 kcal (2) G-P(sol) polarization free energy of solvation -39.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds