Wall clock time and date at job start Sat Apr 11 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00334 * 2 1 4 4 N 1.34784 * 120.00127 * 179.97438 * 2 1 3 5 5 C 1.47576 * 134.49542 * 180.02562 * 4 2 1 6 6 C 1.53942 * 86.11852 * 155.35966 * 5 4 2 7 7 N 1.46491 * 113.74194 * 137.95195 * 6 5 4 8 8 C 1.35317 * 125.87029 * 277.21898 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.18381 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47098 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47081 * 120.00118 * 20 18 16 23 23 H 1.48496 * 109.47496 * 240.00528 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 9 8 26 26 C 1.47807 * 134.45239 * 359.87039 * 4 2 1 27 27 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46887 * 299.99925 * 1 2 3 29 29 H 1.09007 * 109.47142 * 60.00175 * 1 2 3 30 30 H 1.09000 * 113.76645 * 41.05224 * 5 4 2 31 31 H 1.09000 * 113.87057 * 269.67450 * 5 4 2 32 32 H 1.09000 * 113.74068 * 269.15192 * 6 5 4 33 33 H 1.08002 * 126.91295 * 0.03783 * 8 7 6 34 34 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 35 35 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 36 36 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 37 37 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 38 38 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 39 39 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.77031 * 90.37650 * 26 4 2 41 41 H 1.08999 * 113.84046 * 318.91260 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6097 -1.5366 0.0012 6 6 3.1591 -2.8620 0.6416 7 7 3.8396 -4.0404 0.0993 8 6 3.5036 -4.6983 -1.0344 9 6 4.3860 -5.7176 -1.1546 10 6 4.4314 -6.7461 -2.2552 11 7 5.3768 -6.3147 -3.2878 12 6 5.5868 -7.0853 -4.3734 13 8 4.9894 -8.1334 -4.4979 14 6 6.5639 -6.6446 -5.4327 15 16 6.6228 -7.8826 -6.7518 16 6 7.8056 -7.1336 -7.8217 17 1 8.2482 -6.1846 -7.5574 18 6 8.1693 -7.7638 -9.0037 19 7 7.6302 -8.9208 -9.3257 20 14 9.4227 -6.9695 -10.1384 21 1 9.8740 -5.6816 -9.5530 22 1 10.5886 -7.8751 -10.2994 23 1 8.8023 -6.7206 -11.4644 24 7 5.2134 -5.6292 -0.1071 25 7 4.8630 -4.6252 0.6167 26 6 1.7848 -2.5912 0.0035 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.2230 -0.9181 0.6564 31 1 4.0357 -1.6527 -0.9954 32 1 3.1485 -2.8415 1.7314 33 1 2.6928 -4.4597 -1.7068 34 1 3.4390 -6.8536 -2.6931 35 1 4.7531 -7.7032 -1.8449 36 1 5.8548 -5.4766 -3.1882 37 1 6.2444 -5.6882 -5.8465 38 1 7.5545 -6.5365 -4.9909 39 1 7.8841 -9.3609 -10.1518 40 1 1.6714 -3.0179 -0.9931 41 1 0.9440 -2.8133 0.6608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740236235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:12 Heat of formation + Delta-G solvation = 74.387505 kcal Electronic energy + Delta-G solvation = -25200.880109 eV Core-core repulsion = 21246.408536 eV Total energy + Delta-G solvation = -3954.471574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.85311 -41.06850 -39.13692 -38.62208 -35.23537 -33.96305 -32.42181 -31.84113 -31.43234 -29.49145 -28.86534 -27.29866 -26.29252 -25.41420 -24.46663 -21.98043 -21.49865 -20.42212 -19.84499 -18.55414 -17.88405 -17.72057 -17.08326 -16.41474 -16.28892 -15.99712 -15.83935 -15.42816 -15.09361 -14.79730 -14.61750 -14.01097 -13.98541 -13.84193 -13.67793 -13.45124 -13.22503 -13.17064 -12.95122 -12.71262 -12.56039 -12.31341 -12.06255 -11.78825 -11.25986 -11.06371 -11.01241 -10.76508 -10.67208 -10.55607 -9.92990 -9.79449 -9.68631 -9.32436 -9.07350 -8.93680 -8.22698 -6.49099 -6.21264 -3.91476 1.00833 1.39941 1.81009 1.97495 2.17638 2.98620 3.07869 3.11051 3.22245 3.29765 3.35489 3.37723 3.75765 3.81299 3.85311 3.98141 4.20969 4.27901 4.32474 4.39064 4.48788 4.64451 4.70707 4.73170 4.77978 4.90500 5.00518 5.11951 5.14093 5.17020 5.41757 5.62835 5.66169 5.78817 5.90402 6.00048 6.15502 6.52696 6.72872 7.35946 7.60772 7.66734 8.05125 8.36249 8.57963 9.24405 10.86212 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.001854 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.093955 B =15099.648495 C =16151.211006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.542 3.458 3 O -0.534 6.534 4 N -0.646 5.646 5 C 0.103 3.897 6 C 0.109 3.891 7 N -0.289 5.289 8 C -0.032 4.032 9 C -0.029 4.029 10 C 0.209 3.791 11 N -0.735 5.735 12 C 0.535 3.465 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.246 5.246 25 N -0.076 5.076 26 C 0.100 3.900 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.194 0.806 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.104 0.896 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.769 16.013 22.712 32.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.333 3.667 3 O -0.409 6.409 4 N -0.385 5.385 5 C -0.021 4.021 6 C 0.005 3.995 7 N -0.082 5.082 8 C -0.183 4.183 9 C -0.166 4.166 10 C 0.083 3.917 11 N -0.390 5.390 12 C 0.321 3.679 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.113 5.113 25 N -0.055 5.055 26 C -0.024 4.024 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.168 0.832 33 H 0.211 0.789 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.586 14.909 23.559 32.441 hybrid contribution 0.885 2.199 -1.350 2.727 sum -15.702 17.107 22.209 32.132 Atomic orbital electron populations 1.21845 0.90312 1.04569 1.05858 1.20601 0.90364 0.81104 0.74631 1.90788 1.70643 1.30073 1.49402 1.49835 1.08316 1.05286 1.75065 1.23572 0.84801 0.91423 1.02261 1.23870 0.92621 0.81322 1.01647 1.47255 1.21779 1.22040 1.17160 1.23417 1.05236 0.96690 0.92922 1.22031 0.96105 0.99761 0.98737 1.19338 0.94765 0.93972 0.83635 1.46002 1.45929 1.25544 1.21516 1.20295 0.82441 0.83650 0.81496 1.90711 1.48430 1.22817 1.77060 1.23530 1.00277 1.06324 1.00232 1.85381 1.56573 1.25572 1.15744 1.22914 1.27996 1.09489 1.07908 0.90870 1.24995 0.96654 0.94873 0.97099 1.70026 1.41468 1.14794 1.23988 0.86118 0.80316 0.79159 0.79909 1.19632 1.20561 1.20585 1.75192 1.22089 1.10584 1.03480 1.78418 1.01223 1.04740 1.21104 1.23695 0.96265 0.79998 1.02451 0.90425 0.88243 0.88136 0.87872 0.88417 0.83238 0.78861 0.89576 0.89511 0.76722 0.89227 0.89110 0.92243 0.87854 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.38 10.34 36.00 0.37 -0.01 16 2 C 0.54 3.41 8.17 -10.98 -0.09 3.32 16 3 O -0.53 -6.06 17.83 5.56 0.10 -5.96 16 4 N -0.65 -2.64 3.61 -178.36 -0.64 -3.29 16 5 C 0.10 0.44 8.64 -2.97 -0.03 0.41 16 6 C 0.11 0.32 5.13 -70.16 -0.36 -0.04 16 7 N -0.29 -1.81 3.54 -56.32 -0.20 -2.01 16 8 C -0.03 -0.19 10.72 -17.04 -0.18 -0.38 16 9 C -0.03 -0.27 6.61 -82.78 -0.55 -0.82 16 10 C 0.21 2.31 6.23 -5.19 -0.03 2.27 16 11 N -0.73 -9.55 5.55 -61.47 -0.34 -9.89 16 12 C 0.53 9.66 7.85 -10.98 -0.09 9.58 16 13 O -0.52 -11.30 15.86 5.55 0.09 -11.21 16 14 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 N -0.25 -2.94 12.41 33.29 0.41 -2.53 16 25 N -0.08 -0.78 13.17 60.35 0.79 0.02 16 26 C 0.10 0.09 7.53 -2.85 -0.02 0.07 16 27 H 0.08 0.00 7.22 -51.93 -0.37 -0.37 16 28 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.15 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.19 0.47 6.74 -52.49 -0.35 0.12 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.40 4.39 8.46 -40.82 -0.35 4.05 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.10 -0.01 6.31 -51.93 -0.33 -0.34 16 41 H 0.11 -0.14 7.97 -51.93 -0.41 -0.56 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -40.13 375.10 -6.36 -46.48 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -5.16 Total: -3.19 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -0.55 Total: -1.33 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.76 Total: -43.03 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.19 Total: -17.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.13 -6.36 -46.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740236235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.871 kcal (2) G-P(sol) polarization free energy of solvation -40.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds