Wall clock time and date at job start Sat Apr 11 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00334 * 2 1 4 4 N 1.34784 * 120.00127 * 179.97438 * 2 1 3 5 5 C 1.47576 * 134.49542 * 180.02562 * 4 2 1 6 6 C 1.53942 * 86.11852 * 155.35966 * 5 4 2 7 7 N 1.46491 * 113.74194 * 137.95195 * 6 5 4 8 8 C 1.35317 * 125.87029 * 277.21898 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.18381 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 S 1.81000 * 109.47389 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99715 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00516 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99710 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00011 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47098 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47081 * 120.00118 * 20 18 16 23 23 H 1.48496 * 109.47496 * 240.00528 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 9 8 26 26 C 1.47807 * 134.45239 * 359.87039 * 4 2 1 27 27 H 1.09000 * 109.46980 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46887 * 299.99925 * 1 2 3 29 29 H 1.09007 * 109.47142 * 60.00175 * 1 2 3 30 30 H 1.09000 * 113.76645 * 41.05224 * 5 4 2 31 31 H 1.09000 * 113.87057 * 269.67450 * 5 4 2 32 32 H 1.09000 * 113.74068 * 269.15192 * 6 5 4 33 33 H 1.08002 * 126.91295 * 0.03783 * 8 7 6 34 34 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 35 35 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 36 36 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 37 37 H 1.08998 * 109.46954 * 300.00581 * 14 12 11 38 38 H 1.09002 * 109.46946 * 59.99717 * 14 12 11 39 39 H 0.96991 * 119.99795 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.77031 * 90.37650 * 26 4 2 41 41 H 1.08999 * 113.84046 * 318.91260 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6097 -1.5366 0.0012 6 6 3.1591 -2.8620 0.6416 7 7 3.8396 -4.0404 0.0993 8 6 3.5036 -4.6983 -1.0344 9 6 4.3860 -5.7176 -1.1546 10 6 4.4314 -6.7461 -2.2552 11 7 5.3768 -6.3147 -3.2878 12 6 5.5868 -7.0853 -4.3734 13 8 4.9894 -8.1334 -4.4979 14 6 6.5639 -6.6446 -5.4327 15 16 6.6228 -7.8826 -6.7518 16 6 7.8056 -7.1336 -7.8217 17 1 8.2482 -6.1846 -7.5574 18 6 8.1693 -7.7638 -9.0037 19 7 7.6302 -8.9208 -9.3257 20 14 9.4227 -6.9695 -10.1384 21 1 9.8740 -5.6816 -9.5530 22 1 10.5886 -7.8751 -10.2994 23 1 8.8023 -6.7206 -11.4644 24 7 5.2134 -5.6292 -0.1071 25 7 4.8630 -4.6252 0.6167 26 6 1.7848 -2.5912 0.0035 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.2230 -0.9181 0.6564 31 1 4.0357 -1.6527 -0.9954 32 1 3.1485 -2.8415 1.7314 33 1 2.6928 -4.4597 -1.7068 34 1 3.4390 -6.8536 -2.6931 35 1 4.7531 -7.7032 -1.8449 36 1 5.8548 -5.4766 -3.1882 37 1 6.2444 -5.6882 -5.8465 38 1 7.5545 -6.5365 -4.9909 39 1 7.8841 -9.3609 -10.1518 40 1 1.6714 -3.0179 -0.9931 41 1 0.9440 -2.8133 0.6608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740236235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:12 Heat of formation + Delta-G solvation = 41.935286 kcal Electronic energy + Delta-G solvation = -25202.287343 eV Core-core repulsion = 21246.408536 eV Total energy + Delta-G solvation = -3955.878808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.46303 -41.43036 -40.52773 -39.11681 -36.28036 -34.67519 -34.56652 -32.75581 -31.79407 -30.83597 -29.16297 -27.84491 -27.53437 -26.99430 -24.96705 -22.65665 -22.01790 -21.76702 -20.13760 -19.88911 -18.93013 -18.15684 -17.79022 -17.67780 -17.09842 -16.86724 -16.67976 -16.61020 -16.36197 -15.90116 -15.70165 -15.08033 -14.90740 -14.51524 -14.44030 -14.29507 -14.10777 -13.94794 -13.60010 -13.35241 -13.28530 -13.14277 -13.02296 -12.90475 -12.72365 -12.62330 -12.55811 -11.95253 -11.70680 -11.26502 -11.14551 -11.11072 -11.01241 -10.35108 -10.24578 -10.13136 -10.03123 -8.63769 -8.33602 -6.10626 0.45976 0.99913 1.13452 1.34380 1.41864 1.42622 1.51169 1.62826 1.64062 1.84094 2.28008 2.47235 2.73918 3.00520 3.06838 3.27272 3.34515 3.61511 3.65895 3.76609 4.00019 4.02510 4.16617 4.30620 4.33490 4.34797 4.39326 4.48210 4.54397 4.57021 4.62420 4.65703 4.68656 4.87481 4.97388 5.05933 5.37346 5.43878 5.52789 6.21529 6.41089 6.47279 6.95398 7.08151 7.23096 7.39440 8.75742 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.001854 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.093955 B =15099.648495 C =16151.211006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.534 3.466 3 O -0.598 6.598 4 N -0.646 5.646 5 C 0.093 3.907 6 C 0.109 3.891 7 N -0.276 5.276 8 C -0.001 4.001 9 C -0.050 4.050 10 C 0.212 3.788 11 N -0.710 5.710 12 C 0.540 3.460 13 O -0.560 6.560 14 C -0.131 4.131 15 S -0.146 6.146 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.258 1.258 22 H -0.275 1.275 23 H -0.273 1.273 24 N -0.287 5.287 25 N -0.104 5.104 26 C 0.111 3.889 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.239 0.761 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.412 0.588 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.271 0.729 40 H 0.124 0.876 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.227 17.659 23.164 34.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.327 3.673 3 O -0.479 6.479 4 N -0.382 5.382 5 C -0.031 4.031 6 C 0.007 3.993 7 N -0.069 5.069 8 C -0.153 4.153 9 C -0.188 4.188 10 C 0.087 3.913 11 N -0.364 5.364 12 C 0.326 3.674 13 O -0.438 6.438 14 C -0.282 4.282 15 S 0.082 5.918 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.819 3.181 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.198 1.198 24 N -0.154 5.154 25 N -0.082 5.082 26 C -0.012 4.012 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.180 0.820 33 H 0.255 0.745 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.050 16.564 24.079 34.350 hybrid contribution 1.280 1.750 -1.345 2.551 sum -16.769 18.314 22.734 33.667 Atomic orbital electron populations 1.21882 0.87044 1.06735 1.06175 1.21378 0.91898 0.80608 0.73401 1.90755 1.72114 1.32475 1.52543 1.49879 1.08299 1.06344 1.73692 1.23601 0.85285 0.92162 1.02061 1.24129 0.93521 0.79249 1.02403 1.47476 1.20649 1.22000 1.16806 1.23948 1.04486 0.94476 0.92365 1.21845 0.97581 1.01009 0.98405 1.19357 0.94740 0.93776 0.83425 1.45756 1.45481 1.24971 1.20178 1.19933 0.81842 0.83437 0.82238 1.90702 1.50152 1.24770 1.78183 1.23378 1.01937 1.04521 0.98390 1.85517 1.57048 1.29995 1.19282 1.23243 1.28075 1.09762 1.08348 0.90059 1.26102 0.98796 0.95357 0.98875 1.70180 1.43201 1.16510 1.24753 0.84926 0.77237 0.78467 0.77442 1.18219 1.20037 1.19807 1.75139 1.23727 1.11842 1.04726 1.78358 1.02909 1.05138 1.21809 1.23992 0.95745 0.77295 1.04135 0.87290 0.87683 0.87975 0.89060 0.88746 0.82023 0.74517 0.87695 0.91413 0.75236 0.87004 0.87742 0.91988 0.85777 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.28 10.34 71.23 0.74 0.45 16 2 C 0.53 5.97 8.17 87.65 0.72 6.68 16 3 O -0.60 -13.87 17.83 -3.03 -0.05 -13.92 16 4 N -0.65 -3.64 3.61 -836.60 -3.02 -6.67 16 5 C 0.09 0.65 8.64 86.49 0.75 1.39 16 6 C 0.11 0.31 5.13 46.74 0.24 0.55 16 7 N -0.28 -2.69 3.54 -332.09 -1.18 -3.86 16 8 C 0.00 -0.01 10.72 83.49 0.89 0.89 16 9 C -0.05 -0.85 6.61 41.60 0.28 -0.58 16 10 C 0.21 4.35 6.23 85.63 0.53 4.88 16 11 N -0.71 -17.25 5.55 -466.79 -2.59 -19.84 16 12 C 0.54 19.10 7.85 87.66 0.69 19.78 16 13 O -0.56 -24.74 15.86 -3.04 -0.05 -24.79 16 14 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 15 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 16 C -0.55 -31.12 9.50 67.96 0.65 -30.47 16 17 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 18 C 0.01 0.77 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 20 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 N -0.29 -6.63 12.41 -48.60 -0.60 -7.23 16 25 N -0.10 -1.98 13.17 37.02 0.49 -1.49 16 26 C 0.11 -0.32 7.53 86.44 0.65 0.33 16 27 H 0.11 -0.52 7.22 -2.39 -0.02 -0.54 16 28 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.24 -0.28 6.74 -2.91 -0.02 -0.30 16 34 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.41 8.12 8.46 -92.71 -0.78 7.33 16 37 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 38 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.27 15.33 8.31 -92.72 -0.77 14.56 16 40 H 0.12 -0.79 6.31 -2.39 -0.02 -0.81 16 41 H 0.14 -1.26 7.97 -2.39 -0.02 -1.28 16 Total: -1.00 -93.15 375.10 1.48 -91.68 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.30 Total: 4.47 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 7.03 Total: 0.48 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -6.62 Total: -94.44 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.10 Total: -38.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -93.15 1.48 -91.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740236235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.615 kcal (2) G-P(sol) polarization free energy of solvation -93.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds