Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34578 * 125.74601 * 2 1 4 4 N 1.30878 * 107.62255 * 179.79930 * 3 2 1 5 5 C 1.34549 * 107.26779 * 0.37091 * 4 3 2 6 6 C 1.47865 * 126.04692 * 179.89199 * 5 4 3 7 7 O 1.21553 * 120.00419 * 179.68969 * 6 5 4 8 8 N 1.34781 * 120.00285 * 359.68689 * 6 5 4 9 9 C 1.46496 * 120.00535 * 184.75959 * 8 6 5 10 10 C 1.52999 * 115.54554 * 270.37844 * 9 8 6 11 11 N 1.46495 * 109.47191 * 324.96460 * 10 9 8 12 12 C 1.34778 * 120.00435 * 174.88276 * 11 10 9 13 13 O 1.21280 * 119.99382 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00454 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47200 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99790 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99667 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46976 * 90.00088 * 20 18 16 22 22 H 1.48498 * 109.47023 * 210.00155 * 20 18 16 23 23 H 1.48503 * 109.46999 * 330.00069 * 20 18 16 24 24 C 1.52993 * 117.50181 * 124.66526 * 9 8 6 25 25 C 1.52999 * 117.49861 * 56.03976 * 9 8 6 26 26 N 1.28846 * 125.74974 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46869 * 269.97906 * 1 2 3 28 28 H 1.08994 * 109.47224 * 29.98143 * 1 2 3 29 29 H 1.09002 * 109.47139 * 149.98274 * 1 2 3 30 30 H 1.08000 * 126.19201 * 0.03840 * 3 2 1 31 31 H 0.97005 * 119.99301 * 4.75107 * 8 6 5 32 32 H 1.08996 * 109.47855 * 84.96884 * 10 9 8 33 33 H 1.09003 * 109.46778 * 204.97008 * 10 9 8 34 34 H 0.97002 * 120.00110 * 354.88772 * 11 10 9 35 35 H 1.08997 * 109.47024 * 300.00175 * 14 12 11 36 36 H 1.09008 * 109.47085 * 60.00127 * 14 12 11 37 37 H 0.97003 * 119.99520 * 180.02562 * 19 18 16 38 38 H 1.09002 * 117.50038 * 359.97438 * 24 9 8 39 39 H 1.09004 * 117.50308 * 145.02452 * 24 9 8 40 40 H 1.08997 * 117.50086 * 214.98186 * 25 9 8 41 41 H 1.09001 * 117.49830 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6851 0.0044 5 6 3.4750 -0.6602 -0.0013 6 6 4.6574 -1.5480 -0.0014 7 8 4.5114 -2.7548 -0.0011 8 7 5.8972 -1.0193 -0.0019 9 6 7.0670 -1.8949 -0.1073 10 6 7.6337 -2.4016 1.2205 11 7 7.4907 -1.3607 2.2413 12 6 7.8282 -1.6200 3.5202 13 8 8.2507 -2.7151 3.8256 14 6 7.6805 -0.5495 4.5704 15 16 8.2107 -1.2003 6.1740 16 6 7.9395 0.2176 7.1844 17 1 7.5533 1.1264 6.7472 18 6 8.2234 0.1667 8.5422 19 7 8.0213 1.2261 9.2969 20 14 8.8921 -1.4050 9.2984 21 1 10.3760 -1.3891 9.2418 22 1 8.4516 -1.4999 10.7134 23 1 8.3803 -2.5754 8.5410 24 6 8.0584 -1.6162 -1.2388 25 6 7.1384 -2.8366 -1.3111 26 7 2.2178 -1.0457 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.9164 2.1190 0.0006 31 1 6.0149 -0.0589 0.0674 32 1 7.0890 -3.2929 1.5316 33 1 8.6887 -2.6455 1.0957 34 1 7.1530 -0.4848 1.9970 35 1 8.2978 0.3084 4.3040 36 1 6.6367 -0.2413 4.6309 37 1 8.2200 1.1907 10.2457 38 1 7.8401 -0.7816 -1.9050 39 1 9.1149 -1.7936 -1.0374 40 1 7.5895 -3.8168 -1.1573 41 1 6.3148 -2.8049 -2.0244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747758408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = 57.969608 kcal Electronic energy + Delta-G solvation = -26074.909762 eV Core-core repulsion = 22119.726255 eV Total energy + Delta-G solvation = -3955.183507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.82622 -40.36364 -39.01878 -37.53316 -35.04960 -33.98821 -33.13931 -32.41142 -32.15001 -29.85256 -28.37023 -26.44656 -25.53998 -24.69072 -23.01299 -22.75304 -21.31896 -20.38485 -19.91592 -18.61116 -17.93195 -17.20242 -17.07272 -16.67976 -16.38071 -15.85452 -15.47258 -15.09239 -15.05939 -14.86623 -14.49577 -14.33074 -13.78469 -13.75429 -13.61015 -13.35693 -13.21355 -12.79236 -12.65557 -12.34161 -11.95751 -11.79126 -11.27945 -11.21794 -10.98162 -10.89036 -10.83325 -10.63622 -10.56181 -10.30152 -9.97166 -9.83019 -9.52517 -9.42923 -8.98295 -8.88338 -8.46160 -6.88023 -6.26485 -3.97517 1.03737 1.69750 1.73174 2.54604 2.81635 3.03903 3.07479 3.26073 3.35488 3.42834 3.53939 3.67022 3.72155 3.90441 4.23367 4.35948 4.36405 4.46664 4.51462 4.56951 4.68617 4.77290 4.81264 5.12705 5.21371 5.30696 5.35053 5.54574 5.55141 5.61538 5.75410 5.80099 5.83663 5.87853 6.03269 6.05581 6.15730 6.58026 7.05249 7.59733 7.65842 7.89663 7.96786 8.44187 8.54856 9.19965 10.82799 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.002759 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.769022 B =10145.677329 C =12021.020711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.304 5.304 3 C 0.194 3.806 4 N -0.485 5.485 5 C 0.141 3.859 6 C 0.622 3.378 7 O -0.502 6.502 8 N -0.682 5.682 9 C 0.082 3.918 10 C 0.154 3.846 11 N -0.731 5.731 12 C 0.531 3.469 13 O -0.519 6.519 14 C -0.123 4.123 15 S -0.141 6.141 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.882 5.882 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.235 1.235 24 C -0.166 4.166 25 C -0.147 4.147 26 N -0.249 5.249 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.228 0.772 31 H 0.413 0.587 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.270 0.730 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 1.670 -27.001 29.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.099 5.099 3 C -0.102 4.102 4 N -0.210 5.210 5 C -0.139 4.139 6 C 0.404 3.596 7 O -0.373 6.373 8 N -0.336 5.336 9 C -0.005 4.005 10 C 0.029 3.971 11 N -0.385 5.385 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.274 4.274 15 S 0.085 5.915 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.204 4.204 25 C -0.185 4.185 26 N -0.089 5.089 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.244 0.756 31 H 0.250 0.750 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.076 -1.460 -26.313 28.988 hybrid contribution -0.836 2.201 0.171 2.361 sum -12.912 0.741 -26.142 29.166 Atomic orbital electron populations 1.22297 0.71968 1.06029 1.05340 1.47405 1.09488 1.03814 1.49225 1.26518 0.85765 0.96062 1.01805 1.71258 1.20596 1.09191 1.19967 1.23646 0.92125 0.89525 1.08621 1.16240 0.80816 0.85891 0.76663 1.90860 1.85365 1.13407 1.47625 1.44860 1.03205 1.10628 1.74857 1.20842 0.88948 0.99373 0.91368 1.21036 1.00564 0.91452 0.84088 1.45794 1.68874 1.16027 1.07849 1.20257 0.76672 0.89083 0.82318 1.90702 1.43933 1.24176 1.80535 1.23266 1.05609 1.00264 0.98216 1.84791 1.86069 1.21934 0.98673 1.22328 1.50683 0.98215 0.95556 0.89416 1.24713 0.93984 0.96664 0.95969 1.69943 1.46690 1.28734 1.06459 0.86733 0.80560 0.84834 0.79728 1.19190 1.19976 1.15883 1.23543 0.97029 1.00447 0.99349 1.23217 1.01806 0.95543 0.97971 1.74351 1.02786 1.13357 1.18405 0.88834 0.87826 0.88096 0.75552 0.75004 0.90244 0.90312 0.76888 0.88458 0.88630 0.91980 0.87923 0.87101 0.87279 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.18 11.38 59.85 0.68 0.86 16 2 N -0.30 -2.27 3.72 -69.39 -0.26 -2.53 16 3 C 0.19 1.29 12.62 -90.48 -1.14 0.15 16 4 N -0.48 -4.89 11.10 -12.37 -0.14 -5.03 16 5 C 0.14 1.75 7.96 -156.36 -1.24 0.50 16 6 C 0.62 8.25 7.67 -12.32 -0.09 8.16 16 7 O -0.50 -8.27 16.47 5.32 0.09 -8.18 16 8 N -0.68 -6.98 4.48 -48.54 -0.22 -7.20 16 9 C 0.08 0.81 2.15 -131.83 -0.28 0.53 16 10 C 0.15 1.94 5.90 -4.04 -0.02 1.91 16 11 N -0.73 -10.23 5.40 -60.30 -0.33 -10.55 16 12 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 13 O -0.52 -11.74 15.86 5.56 0.09 -11.66 16 14 C -0.12 -2.48 6.16 36.00 0.22 -2.26 16 15 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 16 C -0.52 -15.26 10.04 30.94 0.31 -14.94 16 17 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 18 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.91 13.97 55.49 0.78 -26.14 16 20 Si 0.86 22.18 27.74 -169.99 -4.71 17.46 16 21 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 24 C -0.17 -1.17 10.10 -26.73 -0.27 -1.44 16 25 C -0.15 -1.29 9.22 -26.73 -0.25 -1.54 16 26 N -0.25 -3.01 12.08 32.07 0.39 -2.63 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.23 0.33 8.06 -52.49 -0.42 -0.10 16 31 H 0.41 3.49 8.39 -40.82 -0.34 3.15 16 32 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 34 H 0.40 4.57 7.65 -40.82 -0.31 4.26 16 35 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 36 H 0.10 1.84 8.14 -51.91 -0.42 1.42 16 37 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -40.84 376.52 -8.20 -49.04 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.29 Total: 2.83 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -2.27 Total: 4.58 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.22 Total: -54.07 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -40.84 -8.20 -49.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747758408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.008 kcal (2) G-P(sol) polarization free energy of solvation -40.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds