Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34578 * 125.74601 * 2 1 4 4 N 1.30878 * 107.62255 * 179.79930 * 3 2 1 5 5 C 1.34549 * 107.26779 * 0.37091 * 4 3 2 6 6 C 1.47865 * 126.04692 * 179.89199 * 5 4 3 7 7 O 1.21553 * 120.00419 * 179.68969 * 6 5 4 8 8 N 1.34781 * 120.00285 * 359.68689 * 6 5 4 9 9 C 1.46496 * 120.00535 * 184.75959 * 8 6 5 10 10 C 1.52999 * 115.54554 * 270.37844 * 9 8 6 11 11 N 1.46495 * 109.47191 * 324.96460 * 10 9 8 12 12 C 1.34778 * 120.00435 * 174.88276 * 11 10 9 13 13 O 1.21280 * 119.99382 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00454 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47200 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99790 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31629 * 119.99667 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46976 * 90.00088 * 20 18 16 22 22 H 1.48498 * 109.47023 * 210.00155 * 20 18 16 23 23 H 1.48503 * 109.46999 * 330.00069 * 20 18 16 24 24 C 1.52993 * 117.50181 * 124.66526 * 9 8 6 25 25 C 1.52999 * 117.49861 * 56.03976 * 9 8 6 26 26 N 1.28846 * 125.74974 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46869 * 269.97906 * 1 2 3 28 28 H 1.08994 * 109.47224 * 29.98143 * 1 2 3 29 29 H 1.09002 * 109.47139 * 149.98274 * 1 2 3 30 30 H 1.08000 * 126.19201 * 0.03840 * 3 2 1 31 31 H 0.97005 * 119.99301 * 4.75107 * 8 6 5 32 32 H 1.08996 * 109.47855 * 84.96884 * 10 9 8 33 33 H 1.09003 * 109.46778 * 204.97008 * 10 9 8 34 34 H 0.97002 * 120.00110 * 354.88772 * 11 10 9 35 35 H 1.08997 * 109.47024 * 300.00175 * 14 12 11 36 36 H 1.09008 * 109.47085 * 60.00127 * 14 12 11 37 37 H 0.97003 * 119.99520 * 180.02562 * 19 18 16 38 38 H 1.09002 * 117.50038 * 359.97438 * 24 9 8 39 39 H 1.09004 * 117.50308 * 145.02452 * 24 9 8 40 40 H 1.08997 * 117.50086 * 214.98186 * 25 9 8 41 41 H 1.09001 * 117.49830 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6851 0.0044 5 6 3.4750 -0.6602 -0.0013 6 6 4.6574 -1.5480 -0.0014 7 8 4.5114 -2.7548 -0.0011 8 7 5.8972 -1.0193 -0.0019 9 6 7.0670 -1.8949 -0.1073 10 6 7.6337 -2.4016 1.2205 11 7 7.4907 -1.3607 2.2413 12 6 7.8282 -1.6200 3.5202 13 8 8.2507 -2.7151 3.8256 14 6 7.6805 -0.5495 4.5704 15 16 8.2107 -1.2003 6.1740 16 6 7.9395 0.2176 7.1844 17 1 7.5533 1.1264 6.7472 18 6 8.2234 0.1667 8.5422 19 7 8.0213 1.2261 9.2969 20 14 8.8921 -1.4050 9.2984 21 1 10.3760 -1.3891 9.2418 22 1 8.4516 -1.4999 10.7134 23 1 8.3803 -2.5754 8.5410 24 6 8.0584 -1.6162 -1.2388 25 6 7.1384 -2.8366 -1.3111 26 7 2.2178 -1.0457 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.9164 2.1190 0.0006 31 1 6.0149 -0.0589 0.0674 32 1 7.0890 -3.2929 1.5316 33 1 8.6887 -2.6455 1.0957 34 1 7.1530 -0.4848 1.9970 35 1 8.2978 0.3084 4.3040 36 1 6.6367 -0.2413 4.6309 37 1 8.2200 1.1907 10.2457 38 1 7.8401 -0.7816 -1.9050 39 1 9.1149 -1.7936 -1.0374 40 1 7.5895 -3.8168 -1.1573 41 1 6.3148 -2.8049 -2.0244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747758408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = 26.525042 kcal Electronic energy + Delta-G solvation = -26076.273301 eV Core-core repulsion = 22119.726255 eV Total energy + Delta-G solvation = -3956.547046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.47124 -41.34576 -40.41146 -38.48191 -35.63793 -35.30575 -34.67991 -33.96510 -32.81567 -31.39186 -28.84497 -27.97381 -27.43516 -25.44203 -23.67619 -23.33986 -22.08863 -21.81646 -20.83156 -19.94403 -19.28605 -18.21425 -17.84031 -17.78479 -17.37447 -17.12596 -16.81792 -16.67186 -16.16537 -15.98398 -15.59603 -15.32233 -15.14555 -14.92444 -14.68600 -14.52281 -14.01946 -13.96088 -13.62175 -13.49343 -13.35423 -13.01826 -12.89163 -12.68635 -12.42524 -12.04014 -11.87826 -11.59971 -11.56290 -11.46928 -11.21565 -11.17869 -11.00156 -10.66565 -10.55555 -10.33134 -10.16488 -9.01365 -8.52627 -6.23514 0.25426 0.95880 1.07651 1.20714 1.30506 1.45631 1.51486 1.53941 1.86763 2.18173 2.18947 2.25083 2.64352 2.71887 2.85583 3.00556 3.39462 3.54389 3.74289 3.83519 3.86107 3.96584 4.18485 4.31920 4.37937 4.42347 4.44459 4.58306 4.67139 4.67233 4.75252 4.82181 4.98618 5.18909 5.20902 5.27255 5.41310 5.61633 5.70012 6.10352 6.22485 6.37499 6.87523 6.92591 7.05156 7.12267 8.59839 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.002759 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.769022 B =10145.677329 C =12021.020711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.206 3.794 4 N -0.504 5.504 5 C 0.114 3.886 6 C 0.617 3.383 7 O -0.548 6.548 8 N -0.666 5.666 9 C 0.062 3.938 10 C 0.156 3.844 11 N -0.707 5.707 12 C 0.534 3.466 13 O -0.561 6.561 14 C -0.110 4.110 15 S -0.174 6.174 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.260 1.260 22 H -0.258 1.258 23 H -0.239 1.239 24 C -0.130 4.130 25 C -0.153 4.153 26 N -0.288 5.288 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.280 0.720 31 H 0.422 0.578 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.412 0.588 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.277 0.723 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 2.985 -28.651 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.095 5.095 3 C -0.088 4.088 4 N -0.230 5.230 5 C -0.165 4.165 6 C 0.400 3.600 7 O -0.422 6.422 8 N -0.320 5.320 9 C -0.026 4.026 10 C 0.031 3.969 11 N -0.360 5.360 12 C 0.320 3.680 13 O -0.439 6.439 14 C -0.261 4.261 15 S 0.052 5.948 16 C -0.676 4.676 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.735 3.265 21 H -0.185 1.185 22 H -0.183 1.183 23 H -0.163 1.163 24 C -0.167 4.167 25 C -0.191 4.191 26 N -0.130 5.130 27 H 0.121 0.879 28 H 0.164 0.836 29 H 0.115 0.885 30 H 0.295 0.705 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.248 0.752 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.363 -0.075 -28.004 30.611 hybrid contribution -0.911 1.912 0.533 2.183 sum -13.274 1.837 -27.471 30.565 Atomic orbital electron populations 1.22765 0.69173 1.08016 1.06550 1.47795 1.10936 1.03038 1.47779 1.27513 0.84670 0.97598 0.99050 1.71209 1.22741 1.07959 1.21114 1.23529 0.91993 0.90472 1.10507 1.16557 0.81888 0.85579 0.75978 1.90820 1.86129 1.15227 1.49998 1.44774 1.02521 1.11087 1.73581 1.20818 0.89990 1.01095 0.90693 1.21096 1.01179 0.89985 0.84642 1.45562 1.66876 1.17071 1.06519 1.19986 0.76683 0.87957 0.83399 1.90691 1.46330 1.25527 1.81379 1.23244 1.06462 1.01146 0.95200 1.84733 1.86631 1.21310 1.02123 1.22449 1.50283 0.98488 0.96368 0.91882 1.25545 0.94258 0.99588 0.96496 1.70012 1.47693 1.30550 1.07159 0.85882 0.80189 0.80917 0.79488 1.18458 1.18258 1.16337 1.23661 0.97045 0.99512 0.96473 1.23252 1.02387 0.96582 0.96906 1.74261 1.03329 1.15852 1.19531 0.87936 0.83588 0.88456 0.70496 0.73883 0.93235 0.88883 0.75163 0.86300 0.87499 0.91319 0.86167 0.85331 0.86864 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 11.38 127.77 1.45 1.61 16 2 N -0.30 -4.02 3.72 -373.45 -1.39 -5.41 16 3 C 0.21 2.21 12.62 180.30 2.27 4.49 16 4 N -0.50 -9.51 11.10 -193.04 -2.14 -11.65 16 5 C 0.11 2.84 7.96 137.13 1.09 3.94 16 6 C 0.62 16.74 7.67 86.79 0.67 17.40 16 7 O -0.55 -18.94 16.47 -3.88 -0.06 -19.01 16 8 N -0.67 -13.19 4.48 -425.75 -1.91 -15.10 16 9 C 0.06 1.15 2.15 3.60 0.01 1.15 16 10 C 0.16 3.81 5.90 86.38 0.51 4.32 16 11 N -0.71 -18.93 5.40 -463.08 -2.50 -21.43 16 12 C 0.53 19.75 7.85 87.66 0.69 20.44 16 13 O -0.56 -25.41 15.86 -3.03 -0.05 -25.46 16 14 C -0.11 -4.34 6.16 71.23 0.44 -3.90 16 15 S -0.17 -9.09 18.55 -56.49 -1.05 -10.14 16 16 C -0.53 -31.26 10.04 67.96 0.68 -30.58 16 17 H 0.06 3.92 8.03 -2.91 -0.02 3.89 16 18 C 0.05 2.77 5.50 84.86 0.47 3.24 16 19 N -0.92 -56.23 13.97 21.65 0.30 -55.93 16 20 Si 0.91 45.75 27.74 68.60 1.90 47.65 16 21 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.24 -12.09 6.74 99.48 0.67 -11.42 16 24 C -0.13 -1.46 10.10 30.59 0.31 -1.15 16 25 C -0.15 -2.55 9.22 30.59 0.28 -2.27 16 26 N -0.29 -7.00 12.08 -52.44 -0.63 -7.64 16 27 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.15 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.28 -0.48 8.06 -2.91 -0.02 -0.50 16 31 H 0.42 6.56 8.39 -92.70 -0.78 5.78 16 32 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.09 2.04 7.91 -2.39 -0.02 2.02 16 34 H 0.41 8.70 7.65 -92.71 -0.71 8.00 16 35 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 36 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 37 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.13 1.08 8.05 -2.38 -0.02 1.06 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -92.36 376.52 0.91 -91.46 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -0.43 Total: 13.95 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 8.87 Total: 18.70 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -8.27 Total: -117.15 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.11 Total: -44.46 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Total: -92.36 0.91 -91.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747758408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.980 kcal (2) G-P(sol) polarization free energy of solvation -92.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds