Wall clock time and date at job start Sat Apr 11 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38363 * 119.84727 * 2 1 4 4 C 1.37947 * 120.14793 * 180.23473 * 3 2 1 5 5 C 1.39628 * 119.84589 * 359.51151 * 4 3 2 6 6 C 1.47727 * 120.15243 * 180.27473 * 5 4 3 7 7 O 1.21470 * 119.99724 * 0.02562 * 6 5 4 8 8 O 1.34711 * 120.00486 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00160 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47112 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00234 * 179.97438 * 10 9 8 13 13 C 1.39240 * 120.00236 * 175.70824 * 12 10 9 14 14 C 1.39475 * 119.83661 * 215.01896 * 13 12 10 15 15 C 1.36367 * 120.17062 * 179.76275 * 14 13 12 16 16 C 1.40875 * 119.82895 * 0.51153 * 15 14 13 17 17 C 1.41152 * 120.16377 * 179.72097 * 16 15 14 18 18 H 1.08006 * 119.99698 * 214.80446 * 17 16 15 19 19 C 1.39906 * 120.00251 * 34.80765 * 17 16 15 20 20 N 1.30870 * 119.99917 * 355.55423 * 19 17 16 21 21 Si 1.86799 * 119.99903 * 175.56204 * 19 17 16 22 22 H 1.48497 * 109.47520 * 59.99482 * 21 19 17 23 23 H 1.48501 * 109.46813 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46823 * 299.99392 * 21 19 17 25 25 C 1.40873 * 119.66842 * 359.74258 * 16 15 14 26 26 C 1.36372 * 119.82883 * 359.97438 * 25 16 15 27 27 C 1.39628 * 119.70312 * 0.25637 * 5 4 3 28 28 C 1.37949 * 119.84646 * 359.97438 * 27 5 4 29 29 H 1.09007 * 109.47161 * 270.23268 * 1 2 3 30 30 H 1.09006 * 109.46951 * 30.22611 * 1 2 3 31 31 H 1.08994 * 109.47660 * 150.22683 * 1 2 3 32 32 H 1.07994 * 119.93105 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.08005 * 179.79551 * 4 3 2 34 34 H 1.09004 * 109.47069 * 299.99767 * 9 8 6 35 35 H 1.08996 * 109.47470 * 60.00244 * 9 8 6 36 36 H 0.97001 * 119.99584 * 355.71614 * 12 10 9 37 37 H 1.08006 * 119.91399 * 0.02562 * 14 13 12 38 38 H 1.08003 * 120.09042 * 180.25368 * 15 14 13 39 39 H 0.97004 * 119.99798 * 180.02562 * 20 19 17 40 40 H 1.07993 * 120.07942 * 179.97438 * 25 16 15 41 41 H 1.07998 * 119.91318 * 179.97438 * 26 25 16 42 42 H 1.08002 * 120.07785 * 180.02562 * 27 5 4 43 43 H 1.07997 * 119.92690 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5751 1.2073 -0.0049 5 6 4.2763 -0.0001 0.0005 6 6 5.7536 -0.0002 0.0014 7 8 6.3610 1.0518 -0.0020 8 8 6.4272 -1.1668 0.0061 9 6 7.8771 -1.0908 0.0073 10 6 8.4531 -2.4834 0.0133 11 8 7.7143 -3.4452 0.0158 12 7 9.7893 -2.6601 0.0149 13 6 10.3218 -3.9430 0.1106 14 6 11.5091 -4.1509 0.8124 15 6 12.0341 -5.4053 0.9146 16 6 11.3799 -6.4910 0.2998 17 6 11.9203 -7.7914 0.3961 18 1 11.8243 -8.4787 -0.4315 19 6 12.5801 -8.1902 1.5636 20 7 12.7730 -7.3313 2.5321 21 14 13.1861 -9.9483 1.7399 22 1 14.1584 -10.2477 0.6582 23 1 13.8475 -10.1139 3.0591 24 1 12.0345 -10.8808 1.6424 25 6 10.1840 -6.2722 -0.4118 26 6 9.6680 -5.0130 -0.5003 27 6 3.5751 -1.2074 0.0054 28 6 2.1956 -1.2002 0.0054 29 1 -0.3634 0.0042 1.0277 30 1 -0.3633 0.8880 -0.5174 31 1 -0.3634 -0.8919 -0.5103 32 1 1.6521 2.1333 0.0004 33 1 4.1114 2.1447 -0.0082 34 1 8.2140 -0.5617 -0.8842 35 1 8.2122 -0.5557 0.8958 36 1 10.3799 -1.8934 -0.0506 37 1 12.0116 -3.3170 1.2798 38 1 12.9514 -5.5655 1.4618 39 1 13.2308 -7.6077 3.3414 40 1 9.6772 -7.0996 -0.8860 41 1 8.7515 -4.8437 -1.0459 42 1 4.1114 -2.1449 0.0099 43 1 1.6519 -2.1333 0.0095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007751017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:16 Heat of formation + Delta-G solvation = -73.289987 kcal Electronic energy + Delta-G solvation = -26773.708171 eV Core-core repulsion = 22748.636461 eV Total energy + Delta-G solvation = -4025.071709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87755 -39.74995 -39.10863 -37.35183 -36.42092 -34.48913 -33.37218 -32.99605 -31.39035 -29.94624 -29.54241 -28.52853 -27.52549 -24.84413 -23.29588 -22.99803 -21.73288 -21.00113 -20.75702 -19.82088 -18.37780 -17.58500 -17.34360 -16.79005 -16.62100 -16.13057 -15.61558 -15.39088 -15.17409 -14.86535 -14.73032 -14.18368 -13.96946 -13.89409 -13.74673 -13.38615 -12.87141 -12.78353 -12.69169 -12.59598 -12.30361 -12.15006 -11.98284 -11.74647 -11.40486 -11.38666 -11.17289 -11.07270 -10.88938 -10.79580 -10.75431 -10.07416 -9.53102 -9.49687 -9.36624 -9.18184 -9.16063 -8.93374 -7.58409 -6.91800 -6.64595 -4.37460 0.35567 1.01247 2.17474 2.25818 2.46754 2.96520 3.06231 3.08232 3.10690 3.27289 3.42853 3.64289 3.96152 4.33243 4.42726 4.54631 4.62864 4.66608 4.80234 4.88541 4.97174 4.99625 5.01339 5.15074 5.28754 5.33620 5.60182 5.61842 5.64721 5.87003 5.97480 6.14012 6.14669 6.16831 6.40175 6.49317 6.67995 6.86173 7.02939 7.15321 7.25559 7.49300 7.60230 7.68254 7.81545 8.02601 8.17781 8.27957 8.55823 8.64667 8.89703 8.95770 10.26395 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.001803 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.769525 B =15528.755172 C =16395.462700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.051 4.051 3 C -0.137 4.137 4 C -0.050 4.050 5 C -0.132 4.132 6 C 0.510 3.490 7 O -0.509 6.509 8 O -0.324 6.324 9 C 0.053 3.947 10 C 0.499 3.501 11 O -0.509 6.509 12 N -0.645 5.645 13 C 0.000 4.000 14 C -0.118 4.118 15 C -0.142 4.142 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.811 5.811 21 Si 0.917 3.083 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.206 4.206 26 C -0.084 4.084 27 C -0.052 4.052 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.279 0.721 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.010 15.797 -3.291 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.052 4.052 3 C -0.155 4.155 4 C -0.068 4.068 5 C -0.133 4.133 6 C 0.355 3.645 7 O -0.399 6.399 8 O -0.239 6.239 9 C -0.025 4.025 10 C 0.284 3.716 11 O -0.384 6.384 12 N -0.290 5.290 13 C -0.092 4.092 14 C -0.138 4.138 15 C -0.161 4.161 16 C 0.098 3.902 17 C -0.491 4.491 18 H 0.094 0.906 19 C -0.146 4.146 20 N -0.438 5.438 21 Si 0.741 3.259 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.226 4.226 26 C -0.104 4.104 27 C -0.070 4.070 28 C -0.153 4.153 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.163 0.837 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.244 15.411 -3.036 23.325 hybrid contribution 0.766 -0.227 0.291 0.850 sum -16.478 15.183 -2.745 22.574 Atomic orbital electron populations 1.20903 0.90671 1.03306 1.02861 1.20271 0.96570 0.93191 0.95124 1.20987 0.93496 0.98023 1.02954 1.21253 0.94059 0.97214 0.94293 1.19069 0.88785 0.95172 1.10253 1.21254 0.88932 0.81616 0.72651 1.90827 1.70123 1.32651 1.46323 1.86594 1.20364 1.33255 1.83702 1.22748 0.77845 0.96985 1.04909 1.19915 0.83163 0.89752 0.78783 1.90732 1.58735 1.41363 1.47539 1.42776 1.05333 1.08751 1.72097 1.17222 0.99347 0.83074 1.09526 1.20309 0.96175 0.97533 0.99779 1.21193 1.01467 0.90131 1.03359 1.17745 0.89519 0.93252 0.89646 1.19482 1.30926 0.98158 1.00513 0.90572 1.25891 0.93621 0.99675 0.95392 1.69749 1.32909 1.35413 1.05708 0.86233 0.79493 0.82044 0.78088 1.19028 1.20416 1.19072 1.20806 0.97796 0.95353 1.08601 1.20405 0.98901 0.92430 0.98659 1.21647 0.94406 0.98021 0.92952 1.21107 0.93881 0.98079 1.02217 0.90524 0.91129 0.91002 0.85043 0.84445 0.88251 0.88127 0.76830 0.88957 0.84960 0.91029 0.88499 0.87417 0.83742 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 36.01 0.36 -0.20 16 2 C -0.05 -0.38 5.89 -104.53 -0.62 -0.99 16 3 C -0.14 -1.03 9.68 -39.64 -0.38 -1.41 16 4 C -0.05 -0.47 9.60 -39.17 -0.38 -0.85 16 5 C -0.13 -1.50 5.87 -104.98 -0.62 -2.11 16 6 C 0.51 6.84 7.90 34.61 0.27 7.11 16 7 O -0.51 -7.45 16.14 -19.24 -0.31 -7.76 16 8 O -0.32 -4.71 9.01 -47.20 -0.43 -5.14 16 9 C 0.05 0.69 5.95 36.00 0.21 0.91 16 10 C 0.50 8.62 7.74 -10.99 -0.09 8.53 16 11 O -0.51 -10.99 13.92 -14.11 -0.20 -11.19 16 12 N -0.64 -10.96 5.30 -9.74 -0.05 -11.01 16 13 C 0.00 0.00 6.31 -83.57 -0.53 -0.52 16 14 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 15 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 16 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 17 C -0.46 -12.18 9.02 -37.85 -0.34 -12.52 16 18 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 19 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 20 N -0.81 -20.94 10.60 55.55 0.59 -20.35 16 21 Si 0.92 18.88 29.56 -169.99 -5.03 13.86 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.21 -5.17 9.74 -39.26 -0.38 -5.55 16 26 C -0.08 -2.00 8.61 -39.79 -0.34 -2.34 16 27 C -0.05 -0.54 9.62 -39.17 -0.38 -0.92 16 28 C -0.13 -1.12 9.68 -39.64 -0.38 -1.51 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.14 1.21 7.65 -52.49 -0.40 0.80 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.40 5.09 8.82 -40.82 -0.36 4.73 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.13 3.47 6.13 -52.48 -0.32 3.14 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.11 2.52 6.22 -52.49 -0.33 2.20 16 42 H 0.14 1.57 7.61 -52.49 -0.40 1.17 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -32.13 376.33 -9.90 -42.04 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.15 Total: 9.47 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -5.00 Total: -15.59 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.54 Total: -31.36 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.93 Total: -24.09 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.13 -9.90 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007751017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.252 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds