Wall clock time and date at job start Sat Apr 11 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38389 * 119.92833 * 2 1 4 4 C 1.38343 * 120.30908 * 179.97438 * 3 2 1 5 5 C 1.37973 * 120.14650 * 0.27778 * 4 3 2 6 6 C 1.39607 * 119.84328 * 359.47867 * 5 4 3 7 7 C 1.47729 * 120.14745 * 180.25181 * 6 5 4 8 8 O 1.21468 * 120.00064 * 180.27456 * 7 6 5 9 9 O 1.34710 * 119.99949 * 0.26653 * 7 6 5 10 10 C 1.45192 * 117.00285 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47625 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99762 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00412 * 179.97438 * 11 10 9 14 14 C 1.39238 * 120.00105 * 176.69589 * 13 11 10 15 15 C 1.39475 * 119.83497 * 217.48397 * 14 13 11 16 16 C 1.36375 * 120.17166 * 179.76193 * 15 14 13 17 17 C 1.40872 * 119.82382 * 0.51636 * 16 15 14 18 18 C 1.41154 * 120.16450 * 179.71891 * 17 16 15 19 19 H 1.07998 * 119.99912 * 157.97100 * 18 17 16 20 20 C 1.39906 * 119.99540 * 337.96895 * 18 17 16 21 21 N 1.30865 * 120.00492 * 327.61547 * 20 18 17 22 22 Si 1.86809 * 119.99470 * 147.61340 * 20 18 17 23 23 H 1.48499 * 109.47111 * 94.98946 * 22 20 18 24 24 H 1.48507 * 109.46778 * 214.98667 * 22 20 18 25 25 H 1.48499 * 109.47109 * 334.98562 * 22 20 18 26 26 C 1.40871 * 119.67289 * 359.74209 * 17 16 15 27 27 C 1.36378 * 119.82697 * 359.97438 * 26 17 16 28 28 C 1.37923 * 119.92582 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47139 * 89.99410 * 1 2 3 30 30 H 1.08999 * 109.47349 * 209.99865 * 1 2 3 31 31 H 1.09001 * 109.47124 * 329.99770 * 1 2 3 32 32 H 1.08010 * 119.84712 * 0.02645 * 3 2 1 33 33 H 1.08000 * 119.92792 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.07455 * 179.71929 * 5 4 3 35 35 H 1.08997 * 109.47449 * 300.00273 * 10 9 7 36 36 H 1.09008 * 109.47233 * 59.99822 * 10 9 7 37 37 H 0.97003 * 119.99634 * 356.70186 * 13 11 10 38 38 H 1.08003 * 119.91439 * 0.02830 * 15 14 13 39 39 H 1.08000 * 120.08810 * 180.25562 * 16 15 14 40 40 H 0.97006 * 120.00315 * 179.97438 * 21 20 18 41 41 H 1.07997 * 120.08299 * 179.97438 * 26 17 16 42 42 H 1.08002 * 119.91291 * 179.97438 * 27 26 17 43 43 H 1.07997 * 120.07490 * 359.96950 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2085 0.0005 5 6 4.2816 0.0201 -0.0047 6 6 3.5915 -1.1935 0.0004 7 6 4.3351 -2.4699 0.0005 8 8 3.7319 -3.5243 -0.0001 9 8 5.6822 -2.4646 0.0010 10 6 6.3465 -3.7557 0.0004 11 6 7.8397 -3.5524 0.0017 12 8 8.2989 -2.4299 0.0025 13 7 8.6650 -4.6180 0.0020 14 6 10.0431 -4.4313 -0.0663 15 6 10.8271 -5.3148 -0.8080 16 6 12.1769 -5.1357 -0.8836 17 6 12.7803 -4.0611 -0.2011 18 6 14.1775 -3.8724 -0.2695 19 1 14.6015 -2.8997 -0.0686 20 6 15.0130 -4.9455 -0.5977 21 7 14.6880 -6.1614 -0.2391 22 14 16.5927 -4.6427 -1.5478 23 1 17.7253 -4.5119 -0.5963 24 1 16.8454 -5.7835 -2.4644 25 1 16.4630 -3.3921 -2.3380 26 6 11.9825 -3.1762 0.5504 27 6 10.6332 -3.3649 0.6118 28 6 2.1950 -1.1953 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6537 2.1326 0.0004 33 1 4.1134 2.1481 0.0001 34 1 5.3616 0.0286 -0.0089 35 1 6.0555 -4.3144 0.8899 36 1 6.0561 -4.3134 -0.8901 37 1 8.2988 -5.5150 0.0497 38 1 10.3635 -6.1405 -1.3274 39 1 12.7822 -5.8182 -1.4617 40 1 15.2671 -6.9055 -0.4669 41 1 12.4382 -2.3504 1.0766 42 1 10.0203 -2.6875 1.1879 43 1 1.6550 -2.1306 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007816725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:22 Heat of formation + Delta-G solvation = -91.697529 kcal Electronic energy + Delta-G solvation = -26760.093185 eV Core-core repulsion = 22734.223265 eV Total energy + Delta-G solvation = -4025.869920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.92792 -41.09116 -39.94992 -39.05045 -37.56211 -36.21989 -34.87489 -33.95897 -32.36170 -31.57577 -31.32516 -29.72222 -27.84434 -26.69180 -25.34200 -23.52953 -22.83616 -22.65594 -21.73941 -21.41947 -19.35690 -18.95380 -18.84100 -17.88868 -17.84811 -17.63675 -17.01731 -16.87825 -16.22825 -16.07132 -15.80025 -15.55978 -15.14140 -14.96206 -14.66147 -14.47101 -14.18883 -14.12655 -13.97107 -13.84033 -13.79115 -13.34159 -13.06462 -12.93162 -12.85359 -12.70213 -12.63893 -12.34770 -12.07105 -11.98551 -11.93581 -11.76551 -11.61651 -11.19302 -10.83396 -10.52363 -10.09312 -9.74975 -9.50219 -9.05453 -8.75609 -6.25763 -0.40174 0.31868 0.75983 1.11828 1.13490 1.34959 1.37937 1.40866 1.53319 1.68391 2.19204 2.38455 2.62213 2.71754 3.49730 3.58629 3.69989 3.80504 3.89833 3.98234 4.00749 4.13185 4.29197 4.35551 4.37661 4.46378 4.62717 4.85288 4.87472 4.87970 4.92206 5.04134 5.09083 5.12630 5.24151 5.25589 5.27442 5.39311 5.39968 5.51181 5.61962 5.83413 5.87472 5.98865 6.05590 6.32765 6.46289 6.58819 6.63996 6.87076 6.95550 7.27895 8.18580 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031198 B = 0.001735 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.269564 B =16132.083191 C =16791.185541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.078 4.078 4 C -0.129 4.129 5 C -0.079 4.079 6 C -0.144 4.144 7 C 0.511 3.489 8 O -0.526 6.526 9 O -0.341 6.341 10 C 0.060 3.940 11 C 0.501 3.499 12 O -0.558 6.558 13 N -0.633 5.633 14 C -0.012 4.012 15 C -0.096 4.096 16 C -0.190 4.190 17 C 0.084 3.916 18 C -0.504 4.504 19 H 0.076 0.924 20 C 0.053 3.947 21 N -0.796 5.796 22 Si 0.972 3.028 23 H -0.259 1.259 24 H -0.260 1.260 25 H -0.262 1.262 26 C -0.245 4.245 27 C -0.075 4.075 28 C -0.066 4.066 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.420 0.580 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.295 0.705 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.691 7.368 -0.915 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.095 4.095 4 C -0.147 4.147 5 C -0.097 4.097 6 C -0.145 4.145 7 C 0.358 3.642 8 O -0.417 6.417 9 O -0.257 6.257 10 C -0.017 4.017 11 C 0.288 3.712 12 O -0.436 6.436 13 N -0.279 5.279 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.209 4.209 17 C 0.081 3.919 18 C -0.531 4.531 19 H 0.094 0.906 20 C -0.167 4.167 21 N -0.419 5.419 22 Si 0.792 3.208 23 H -0.184 1.184 24 H -0.184 1.184 25 H -0.186 1.186 26 C -0.265 4.265 27 C -0.095 4.095 28 C -0.084 4.084 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.258 0.742 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.487 7.563 -0.889 25.644 hybrid contribution 1.075 -0.730 -0.129 1.305 sum -23.413 6.833 -1.018 24.411 Atomic orbital electron populations 1.20867 0.88280 1.04195 1.03582 1.20226 0.98096 0.92005 0.99806 1.21774 0.94073 0.98933 0.94759 1.21500 0.94914 0.98302 0.99953 1.21647 1.00972 0.91886 0.95189 1.19140 0.93890 0.90077 1.11435 1.21612 0.80283 0.90334 0.71959 1.90802 1.69698 1.33795 1.47421 1.86589 1.20813 1.34360 1.83925 1.22749 0.87802 0.83748 1.07420 1.20572 0.88682 0.84946 0.77012 1.90720 1.78056 1.25132 1.49685 1.42576 1.03869 1.09535 1.71969 1.17049 0.82146 1.02559 1.08774 1.20445 0.93670 0.99176 0.98270 1.20653 0.93729 1.01635 1.04921 1.17937 0.93871 0.91186 0.88889 1.19735 0.91976 0.97179 1.44212 0.90636 1.26722 1.03152 0.93636 0.93189 1.69932 1.38889 1.01668 1.31431 0.85370 0.76804 0.79658 0.79012 1.18386 1.18423 1.18585 1.20717 0.93846 1.04582 1.07371 1.20421 0.94117 0.97104 0.97880 1.21270 0.91288 0.99791 0.96035 0.89936 0.90986 0.89455 0.82058 0.82769 0.85209 0.85571 0.85574 0.74230 0.85576 0.88225 0.89383 0.88950 0.88042 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 71.23 0.71 -0.10 16 2 C -0.10 -1.34 5.87 -19.90 -0.12 -1.46 16 3 C -0.08 -0.89 9.69 22.33 0.22 -0.67 16 4 C -0.13 -1.87 10.03 22.23 0.22 -1.65 16 5 C -0.08 -1.62 9.62 22.54 0.22 -1.41 16 6 C -0.14 -3.28 5.87 -20.10 -0.12 -3.40 16 7 C 0.51 13.69 7.90 70.33 0.56 14.25 16 8 O -0.53 -15.12 16.14 19.94 0.32 -14.80 16 9 O -0.34 -9.89 9.01 -49.81 -0.45 -10.34 16 10 C 0.06 1.48 5.95 71.24 0.42 1.91 16 11 C 0.50 16.97 7.72 87.66 0.68 17.65 16 12 O -0.56 -24.45 14.12 15.76 0.22 -24.22 16 13 N -0.63 -20.85 5.30 -303.11 -1.61 -22.46 16 14 C -0.01 -0.54 6.25 38.56 0.24 -0.30 16 15 C -0.10 -4.24 9.90 22.13 0.22 -4.02 16 16 C -0.19 -9.74 8.74 22.48 0.20 -9.54 16 17 C 0.08 4.62 5.57 -21.27 -0.12 4.50 16 18 C -0.50 -27.42 8.94 23.39 0.21 -27.21 16 19 H 0.08 4.04 8.02 -2.91 -0.02 4.02 16 20 C 0.05 2.62 4.77 85.24 0.41 3.03 16 21 N -0.80 -40.10 11.78 21.82 0.26 -39.85 16 22 Si 0.97 37.13 29.66 68.60 2.03 39.17 16 23 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.25 -12.99 9.74 22.48 0.22 -12.77 16 27 C -0.08 -3.70 8.59 22.13 0.19 -3.51 16 28 C -0.07 -1.21 9.24 22.54 0.21 -1.01 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.09 0.34 8.08 -2.39 -0.02 0.32 16 32 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.13 2.97 7.61 -2.91 -0.02 2.94 16 35 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.13 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.42 9.96 8.82 -92.71 -0.82 9.15 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.10 5.19 6.52 -2.91 -0.02 5.17 16 40 H 0.30 13.16 8.30 -92.70 -0.77 12.39 16 41 H 0.09 4.75 8.06 -2.91 -0.02 4.72 16 42 H 0.10 4.95 6.45 -2.91 -0.02 4.93 16 43 H 0.14 2.43 7.65 -2.91 -0.02 2.41 16 Total: -1.00 -71.75 377.92 5.58 -66.17 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.24 Total: 32.05 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.56 Total: -25.72 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -1.35 Total: -62.30 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: 0.10 Total: -49.37 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.17 kcal Total: -71.75 5.58 -66.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007816725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.532 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds