Wall clock time and date at job start Sat Apr 11 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21256 * 119.99800 * 2 1 4 4 C 1.47160 * 120.00003 * 180.02562 * 2 1 3 5 5 C 1.39865 * 120.17258 * 359.97438 * 4 2 1 6 6 C 1.37865 * 119.82541 * 179.97438 * 5 4 2 7 7 C 1.38425 * 120.17351 * 0.28167 * 6 5 4 8 8 C 1.38389 * 120.34616 * 359.44473 * 7 6 5 9 9 S 1.76200 * 119.91225 * 180.30110 * 8 7 6 10 10 O 1.42097 * 106.40566 * 30.43604 * 9 8 7 11 11 O 1.42095 * 106.40051 * 163.35592 * 9 8 7 12 12 N 1.65602 * 107.21696 * 276.89344 * 9 8 7 13 13 C 1.46498 * 119.99756 * 84.01905 * 12 9 8 14 14 C 1.50706 * 109.46996 * 95.00166 * 13 12 9 15 15 H 1.07990 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00002 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46996 * 60.00178 * 18 16 14 20 20 H 1.48512 * 109.47157 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47250 * 299.99960 * 18 16 14 22 22 C 1.46496 * 120.00022 * 264.01713 * 12 9 8 23 23 C 1.52997 * 109.47091 * 114.10842 * 22 12 9 24 24 C 1.53006 * 109.47356 * 176.51179 * 23 22 12 25 25 C 1.53003 * 109.47194 * 296.50859 * 23 22 12 26 26 C 1.37906 * 120.16855 * 0.55018 * 8 7 6 27 27 H 1.08996 * 109.47174 * 240.00031 * 1 2 3 28 28 H 1.09001 * 109.47523 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47219 * 119.99616 * 1 2 3 30 30 H 1.07999 * 120.08713 * 0.02562 * 5 4 2 31 31 H 1.08005 * 119.91909 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.83076 * 179.69786 * 7 6 5 33 33 H 1.09000 * 109.46873 * 214.99630 * 13 12 9 34 34 H 1.08996 * 109.47504 * 334.99902 * 13 12 9 35 35 H 0.97004 * 120.00048 * 180.02562 * 17 16 14 36 36 H 1.08994 * 109.47401 * 234.10681 * 22 12 9 37 37 H 1.09004 * 109.47458 * 354.11194 * 22 12 9 38 38 H 1.08997 * 109.47344 * 56.51106 * 23 22 12 39 39 H 1.08997 * 109.46954 * 59.99688 * 24 23 22 40 40 H 1.09002 * 109.47193 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.46599 * 299.99840 * 24 23 22 42 42 H 1.09005 * 109.46892 * 67.89097 * 25 23 22 43 43 H 1.09005 * 109.47313 * 187.89120 * 25 23 22 44 44 H 1.08993 * 109.47271 * 307.89432 * 25 23 22 45 45 H 1.08004 * 120.08397 * 179.74670 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2428 -1.2744 -0.0006 5 6 1.5471 -2.4878 -0.0006 6 6 2.2437 -3.6776 -0.0016 7 6 3.6279 -3.6734 0.0032 8 6 4.3235 -2.4770 -0.0025 9 16 6.0855 -2.4851 -0.0043 10 8 6.4807 -3.6650 -0.6904 11 8 6.4922 -1.1825 -0.4005 12 7 6.5764 -2.6707 1.5663 13 6 6.6614 -4.0101 2.1537 14 6 8.0726 -4.5243 2.0298 15 1 8.8301 -3.9146 1.5601 16 6 8.3964 -5.7731 2.5161 17 7 7.4739 -6.5154 3.0886 18 14 10.1453 -6.4108 2.3618 19 1 11.0706 -5.4962 3.0776 20 1 10.2318 -7.7681 2.9585 21 1 10.5240 -6.4752 0.9274 22 6 6.9257 -1.4956 2.3683 23 6 5.9179 -1.3385 3.5087 24 6 6.3319 -0.1635 4.3970 25 6 4.5275 -1.0735 2.9278 26 6 3.6411 -1.2786 -0.0015 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4671 -2.4927 -0.0006 31 1 1.7080 -4.6154 -0.0021 32 1 4.1679 -4.6086 0.0072 33 1 6.3829 -3.9634 3.2065 34 1 5.9826 -4.6813 1.6277 35 1 7.7018 -7.3939 3.4310 36 1 7.9259 -1.6225 2.7824 37 1 6.9033 -0.6061 1.7386 38 1 5.8956 -2.2524 4.1023 39 1 6.3542 0.7504 3.8035 40 1 5.6136 -0.0514 5.2092 41 1 7.3223 -0.3523 4.8109 42 1 4.1736 -1.9657 2.4111 43 1 3.8383 -0.8233 3.7344 44 1 4.5801 -0.2429 2.2240 45 1 4.1854 -0.3457 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042288255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:28 Heat of formation + Delta-G solvation = -93.520188 kcal Electronic energy + Delta-G solvation = -28754.737628 eV Core-core repulsion = 24864.232623 eV Total energy + Delta-G solvation = -3890.505005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.15039 -38.30080 -37.20159 -36.64115 -35.25240 -33.74623 -32.36652 -32.12479 -31.29827 -29.62152 -27.47801 -26.88209 -25.00730 -24.11268 -23.03099 -22.55165 -20.52284 -19.61960 -18.33128 -17.68651 -16.95633 -16.44141 -16.06234 -15.94749 -15.54957 -15.36313 -15.23616 -14.66186 -14.48225 -14.22426 -14.04513 -13.94489 -13.69135 -12.93202 -12.76877 -12.51948 -12.41286 -12.33204 -12.28257 -12.16806 -11.99540 -11.72968 -11.65165 -11.45762 -11.27087 -11.13184 -11.09898 -10.75495 -10.69224 -10.63271 -10.47852 -10.24683 -9.97242 -9.89415 -9.73847 -9.46213 -9.14407 -8.45442 -8.06554 -6.08467 -4.11751 0.39258 0.82474 1.03322 2.15006 3.33489 3.35261 3.36845 3.42295 3.70497 3.78021 4.26460 4.43855 4.57031 4.64243 4.76251 4.90152 4.94916 5.06665 5.13237 5.18137 5.24232 5.26514 5.31275 5.38181 5.47771 5.66362 5.72490 5.72945 5.84506 5.96085 5.99234 6.04205 6.06659 6.07300 6.10161 6.26633 6.31810 6.48348 6.59211 6.62260 6.75515 7.17939 7.29127 7.34484 7.55924 7.89417 8.17560 8.90328 9.53368 10.99998 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.004126 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.705602 B = 6784.378955 C = 7423.657133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.455 6.455 4 C -0.201 4.201 5 C -0.028 4.028 6 C -0.153 4.153 7 C 0.019 3.981 8 C -0.685 4.685 9 S 2.680 3.320 10 O -0.939 6.939 11 O -0.973 6.973 12 N -0.976 5.976 13 C 0.257 3.743 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.897 5.897 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.126 3.874 23 C -0.115 4.115 24 C -0.143 4.143 25 C -0.154 4.154 26 C 0.040 3.960 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 8.988 -1.881 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.273 3.727 3 O -0.330 6.330 4 C -0.203 4.203 5 C -0.046 4.046 6 C -0.172 4.172 7 C 0.000 4.000 8 C -0.768 4.768 9 S 2.767 3.233 10 O -0.929 6.929 11 O -0.964 6.964 12 N -0.816 5.816 13 C 0.135 3.865 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.536 5.536 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.000 4.000 23 C -0.135 4.135 24 C -0.201 4.201 25 C -0.212 4.212 26 C 0.021 3.979 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.125 9.433 -2.524 17.172 hybrid contribution 0.062 -0.766 0.341 0.841 sum -14.063 8.667 -2.183 16.663 Atomic orbital electron populations 1.22248 0.93642 1.05236 1.04518 1.22466 0.91654 0.87479 0.71100 1.90565 1.72136 1.34129 1.36167 1.20563 0.94538 0.95059 1.10133 1.21650 1.00087 0.91590 0.91288 1.21286 0.94321 0.98517 1.03034 1.21348 0.94821 0.97262 0.86615 1.31617 1.29631 0.98756 1.16799 1.02457 0.73498 0.73444 0.73865 1.93617 1.79847 1.48043 1.71367 1.93505 1.80858 1.40462 1.81548 1.57383 1.79061 1.14450 1.30689 1.19082 0.97615 0.74870 0.94888 1.21433 0.95216 1.01390 1.38496 0.92054 1.24898 0.97596 0.96434 0.94934 1.69904 1.33160 1.11179 1.39388 0.86592 0.84576 0.77852 0.78666 1.20181 1.21244 1.19956 1.21340 0.98797 0.87157 0.92704 1.21504 0.95124 0.99473 0.97398 1.21762 1.01312 0.97869 0.99138 1.22060 0.96899 1.01346 1.00856 1.21178 0.93415 0.97321 0.86025 0.88767 0.89609 0.88839 0.84632 0.84409 0.83449 0.94151 0.94802 0.92664 0.90117 0.90004 0.89831 0.92859 0.92960 0.92415 0.92473 0.92974 0.92993 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 8.93 36.00 0.32 -0.98 16 2 C 0.40 4.45 7.23 -30.69 -0.22 4.23 16 3 O -0.45 -6.77 17.08 5.58 0.10 -6.67 16 4 C -0.20 -2.44 5.87 -105.07 -0.62 -3.06 16 5 C -0.03 -0.27 9.47 -39.11 -0.37 -0.64 16 6 C -0.15 -1.68 10.03 -39.65 -0.40 -2.07 16 7 C 0.02 0.27 9.52 -39.46 -0.38 -0.11 16 8 C -0.68 -11.04 4.47 -39.65 -0.18 -11.21 16 9 S 2.68 53.00 5.61 -107.50 -0.60 52.40 16 10 O -0.94 -21.75 16.66 -57.18 -0.95 -22.70 16 11 O -0.97 -20.01 15.50 -57.18 -0.89 -20.90 16 12 N -0.98 -19.55 2.40 -115.67 -0.28 -19.82 16 13 C 0.26 6.06 4.99 -5.19 -0.03 6.03 16 14 C -0.53 -14.19 9.38 -34.44 -0.32 -14.51 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -25.19 13.29 55.43 0.74 -24.46 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.13 2.19 5.27 -4.05 -0.02 2.17 16 23 C -0.11 -1.73 2.93 -90.62 -0.27 -2.00 16 24 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 25 C -0.15 -2.19 7.94 37.16 0.29 -1.90 16 26 C 0.04 0.59 6.80 -39.11 -0.27 0.33 16 27 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.14 0.77 7.05 -52.49 -0.37 0.40 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.15 2.20 7.77 -52.49 -0.41 1.79 16 33 H 0.04 0.97 6.70 -51.93 -0.35 0.62 16 34 H 0.03 0.83 7.77 -51.93 -0.40 0.43 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.35 6.70 -51.93 -0.35 1.00 16 38 H 0.08 1.38 6.79 -51.93 -0.35 1.03 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.85 5.78 -51.93 -0.30 0.55 16 43 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 44 H 0.05 0.73 7.15 -51.93 -0.37 0.36 16 45 H 0.15 2.31 6.79 -52.48 -0.36 1.95 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -33.34 380.54 -9.98 -43.31 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.60 Total: 0.28 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.20 Total: -23.52 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.46 Total: -44.28 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.74 Total: -50.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 53.00 SS G_CDS: -0.60 Total: 52.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.34 -9.98 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042288255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.206 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds