Wall clock time and date at job start Sat Apr 11 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.02954 * 2 1 4 4 C 1.38249 * 120.05361 * 180.29725 * 3 2 1 5 5 S 1.76206 * 119.93820 * 179.72912 * 4 3 2 6 6 O 1.42098 * 106.39663 * 156.19023 * 5 4 3 7 7 O 1.42091 * 106.40257 * 23.27424 * 5 4 3 8 8 N 1.65594 * 107.21677 * 269.72758 * 5 4 3 9 9 C 1.36941 * 119.99963 * 90.00828 * 8 5 4 10 10 H 1.08003 * 119.99877 * 226.67044 * 9 8 5 11 11 C 1.38808 * 120.00045 * 46.66564 * 9 8 5 12 12 N 1.31620 * 119.99971 * 26.55906 * 11 9 8 13 13 Si 1.86799 * 120.00101 * 206.55459 * 11 9 8 14 14 H 1.48502 * 109.47128 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47241 * 120.00375 * 13 11 9 16 16 H 1.48501 * 109.47166 * 240.00127 * 13 11 9 17 17 C 1.46501 * 120.00216 * 269.72546 * 8 5 4 18 18 C 1.53005 * 117.50137 * 193.09748 * 17 8 5 19 19 C 1.53003 * 117.49752 * 124.43957 * 17 8 5 20 20 C 1.38286 * 120.11199 * 359.45927 * 4 3 2 21 21 C 1.38116 * 120.05478 * 0.24758 * 20 4 3 22 22 C 1.38718 * 120.02681 * 179.73803 * 2 1 3 23 23 O 1.35894 * 120.05663 * 359.94795 * 22 2 1 24 24 C 1.42906 * 117.00065 * 174.59352 * 23 22 2 25 25 C 1.52999 * 109.46683 * 84.52938 * 24 23 22 26 26 C 1.53000 * 109.46881 * 204.53116 * 24 23 22 27 27 H 1.09002 * 109.46281 * 270.26461 * 1 2 3 28 28 H 1.08988 * 109.47203 * 30.26646 * 1 2 3 29 29 H 1.09005 * 109.47023 * 150.26818 * 1 2 3 30 30 H 1.08001 * 119.97450 * 0.05571 * 3 2 1 31 31 H 0.96998 * 120.00031 * 184.84840 * 12 11 9 32 32 H 1.08998 * 115.55042 * 338.77172 * 17 8 5 33 33 H 1.09003 * 117.49615 * 0.02562 * 18 17 8 34 34 H 1.08993 * 117.49613 * 145.02139 * 18 17 8 35 35 H 1.08998 * 117.49791 * 214.98194 * 19 17 8 36 36 H 1.09003 * 117.49745 * 359.97406 * 19 17 8 37 37 H 1.07994 * 119.96683 * 180.26821 * 20 4 3 38 38 H 1.08007 * 120.02802 * 180.02562 * 21 20 4 39 39 H 1.09001 * 109.46832 * 324.52994 * 24 23 22 40 40 H 1.08997 * 109.46956 * 60.00433 * 25 24 23 41 41 H 1.09003 * 109.46547 * 179.97438 * 25 24 23 42 42 H 1.08994 * 109.47265 * 299.99823 * 25 24 23 43 43 H 1.08997 * 109.47189 * 60.00263 * 26 24 23 44 44 H 1.09003 * 109.46969 * 179.97438 * 26 24 23 45 45 H 1.09001 * 109.47288 * 299.99599 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 16 4.4596 2.7241 -0.0134 6 8 5.7431 2.4510 0.5317 7 8 3.5768 3.6975 0.5271 8 7 4.7035 3.1418 -1.5971 9 6 3.7764 3.9061 -2.2542 10 1 3.4466 3.6234 -3.2430 11 6 3.2606 5.0440 -1.6493 12 7 3.9688 5.6875 -0.7457 13 14 1.5612 5.6620 -2.1179 14 1 0.9761 4.7676 -3.1489 15 1 0.6884 5.6693 -0.9165 16 1 1.6679 7.0403 -2.6604 17 6 5.9139 2.6990 -2.2935 18 6 6.2371 3.3569 -3.6366 19 6 5.7333 1.9121 -3.5932 20 6 4.2752 0.0009 -0.0011 21 6 3.5887 -1.1976 0.0050 22 6 2.2012 -1.2010 0.0055 23 8 1.5234 -2.3788 0.0119 24 6 2.2985 -3.5740 -0.1026 25 6 2.8084 -3.9855 1.2799 26 6 1.4284 -4.6927 -0.6793 27 1 -0.3632 0.0047 1.0277 28 1 -0.3633 0.8875 -0.5179 29 1 -0.3633 -0.8924 -0.5097 30 1 1.6585 2.1315 0.0009 31 1 3.5819 6.4405 -0.2723 32 1 6.7520 2.4260 -1.6523 33 1 5.5493 4.1196 -4.0018 34 1 7.2877 3.5164 -3.8789 35 1 6.4528 1.1217 -3.8071 36 1 4.7139 1.7236 -3.9299 37 1 5.3552 0.0041 -0.0016 38 1 4.1314 -2.1314 0.0093 39 1 3.1461 -3.3953 -0.7642 40 1 1.9607 -4.1642 1.9414 41 1 3.3992 -4.8974 1.1926 42 1 3.4281 -3.1886 1.6907 43 1 1.0652 -4.3994 -1.6642 44 1 2.0197 -5.6042 -0.7671 45 1 0.5808 -4.8714 -0.0177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051155867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:44 Heat of formation + Delta-G solvation = -53.854961 kcal Electronic energy + Delta-G solvation = -28643.881646 eV Core-core repulsion = 24755.096653 eV Total energy + Delta-G solvation = -3888.784992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.23174 -37.51161 -37.14478 -35.66537 -34.13039 -33.49862 -33.22780 -32.17480 -30.59504 -29.72279 -27.49963 -26.50755 -24.92058 -23.38776 -21.66810 -21.52003 -20.72062 -20.51004 -18.86574 -18.03809 -17.10293 -16.14049 -15.88717 -15.82887 -15.54094 -15.04165 -14.59469 -14.29248 -14.13121 -13.91027 -13.64152 -13.26831 -13.18214 -12.82251 -12.68529 -12.55337 -12.50906 -12.25878 -12.16620 -11.81499 -11.70561 -11.59693 -11.43337 -11.20730 -11.09299 -10.83431 -10.80556 -10.62121 -10.52773 -10.41281 -10.31972 -10.24859 -9.97861 -9.59777 -9.38013 -8.57311 -8.49933 -8.00930 -7.53724 -6.48412 -4.11952 1.45750 1.68959 2.02287 3.16790 3.22924 3.30615 3.34398 3.88553 4.17215 4.56707 4.62032 4.69227 4.74928 4.84837 4.95522 5.01604 5.06702 5.28014 5.30292 5.38841 5.48222 5.50816 5.56840 5.67520 5.73959 5.75350 5.79249 5.85855 5.87446 5.88304 5.92063 5.94463 6.14205 6.23611 6.31666 6.37451 6.42603 6.56897 6.63525 6.74655 6.86631 7.01703 7.11157 7.43369 7.51446 7.56707 8.24410 8.92335 9.34148 10.55827 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.004317 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.394921 B = 6484.030976 C = 7196.693830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.146 4.146 3 C 0.016 3.984 4 C -0.690 4.690 5 S 2.578 3.422 6 O -1.014 7.014 7 O -0.944 6.944 8 N -0.790 5.790 9 C -0.287 4.287 10 H 0.082 0.918 11 C 0.062 3.938 12 N -0.772 5.772 13 Si 0.909 3.091 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.280 1.280 17 C 0.095 3.905 18 C -0.165 4.165 19 C -0.212 4.212 20 C 0.001 3.999 21 C -0.234 4.234 22 C 0.156 3.844 23 O -0.309 6.309 24 C 0.074 3.926 25 C -0.181 4.181 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.141 0.859 31 H 0.279 0.721 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 -14.582 -1.959 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.148 4.148 3 C -0.003 4.003 4 C -0.767 4.767 5 S 2.676 3.324 6 O -1.004 7.004 7 O -0.932 6.932 8 N -0.611 5.611 9 C -0.433 4.433 10 H 0.100 0.900 11 C -0.156 4.156 12 N -0.407 5.407 13 Si 0.734 3.266 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.206 1.206 17 C -0.014 4.014 18 C -0.204 4.204 19 C -0.252 4.252 20 C -0.018 4.018 21 C -0.253 4.253 22 C 0.111 3.889 23 O -0.223 6.223 24 C 0.018 3.982 25 C -0.238 4.238 26 C -0.204 4.204 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.969 -14.217 -0.872 14.550 hybrid contribution -0.850 -0.533 -0.258 1.036 sum -3.818 -14.750 -1.129 15.278 Atomic orbital electron populations 1.20564 0.90678 1.02557 1.01932 1.19369 0.96396 0.90538 1.08462 1.20679 0.92571 0.97144 0.89929 1.32450 1.06422 1.23812 1.14043 1.09811 0.73348 0.73066 0.76163 1.93296 1.41500 1.86300 1.79292 1.93441 1.66442 1.55389 1.77971 1.52345 1.22292 1.55014 1.31490 1.18926 1.19611 1.01592 1.03132 0.90043 1.25567 0.99242 0.94152 0.96642 1.69916 1.35084 1.15717 1.19964 0.86183 0.82937 0.78575 0.78948 1.18874 1.19748 1.20586 1.21373 0.89909 1.01956 0.88132 1.23077 1.00746 0.95805 1.00792 1.23324 1.01997 0.94521 1.05370 1.20638 0.99611 0.90679 0.90889 1.21265 0.93001 0.99253 1.11761 1.18871 0.90482 0.85139 0.94417 1.86093 1.36262 1.12238 1.87666 1.22428 0.94691 0.83782 0.97316 1.22394 1.02130 1.02263 0.97045 1.21838 1.00374 0.96499 1.01685 0.91819 0.91496 0.91575 0.84172 0.91013 0.86358 0.87366 0.89876 0.89947 0.88971 0.85144 0.85527 0.90791 0.91522 0.91123 0.91585 0.91652 0.90651 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.79 36.01 0.35 -1.12 16 2 C -0.15 -2.61 5.89 -104.47 -0.62 -3.23 16 3 C 0.02 0.32 9.17 -39.60 -0.36 -0.04 16 4 C -0.69 -14.90 5.98 -39.56 -0.24 -15.13 16 5 S 2.58 64.35 5.46 -107.50 -0.59 63.77 16 6 O -1.01 -26.77 16.02 -57.18 -0.92 -27.69 16 7 O -0.94 -26.10 13.14 -57.18 -0.75 -26.86 16 8 N -0.79 -18.92 3.08 -53.42 -0.16 -19.09 16 9 C -0.29 -7.05 7.62 -15.06 -0.11 -7.16 16 10 H 0.08 1.90 7.80 -52.48 -0.41 1.49 16 11 C 0.06 1.58 3.96 -17.43 -0.07 1.51 16 12 N -0.77 -21.12 11.45 55.49 0.64 -20.49 16 13 Si 0.91 19.72 29.63 -169.99 -5.04 14.69 16 14 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 C 0.10 1.99 6.43 -67.93 -0.44 1.55 16 18 C -0.16 -3.00 9.86 -26.69 -0.26 -3.27 16 19 C -0.21 -3.69 10.18 -26.69 -0.27 -3.96 16 20 C 0.00 0.02 9.52 -39.61 -0.38 -0.36 16 21 C -0.23 -3.86 8.22 -39.44 -0.32 -4.18 16 22 C 0.16 2.62 6.57 -39.21 -0.26 2.36 16 23 O -0.31 -4.43 8.85 -19.41 -0.17 -4.60 16 24 C 0.07 0.80 2.85 -26.73 -0.08 0.72 16 25 C -0.18 -1.74 9.16 37.16 0.34 -1.40 16 26 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.93 8.09 -51.94 -0.42 0.51 16 29 H 0.07 0.90 7.53 -51.93 -0.39 0.50 16 30 H 0.14 2.88 7.60 -52.49 -0.40 2.48 16 31 H 0.28 7.26 8.32 -40.82 -0.34 6.92 16 32 H 0.12 2.42 7.31 -51.93 -0.38 2.04 16 33 H 0.11 2.11 7.09 -51.93 -0.37 1.74 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 37 H 0.13 2.36 7.61 -52.49 -0.40 1.96 16 38 H 0.13 1.69 5.41 -52.48 -0.28 1.41 16 39 H 0.07 0.78 6.34 -51.93 -0.33 0.45 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.72 6.86 -51.93 -0.36 0.37 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -31.22 376.91 -10.34 -41.57 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.67 Total: 7.59 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: -2.36 Total: -34.57 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.47 Total: -39.57 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.84 Total: -59.14 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.04 Total: 14.69 kcal Atomic # 16 Polarization: 64.35 SS G_CDS: -0.59 Total: 63.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.22 -10.34 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.289 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds