Wall clock time and date at job start Sat Apr 11 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35901 * 117.00139 * 2 1 4 4 C 1.38749 * 120.05464 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94491 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05507 * 0.02562 * 5 4 3 7 7 S 1.76195 * 119.94477 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40385 * 5.72316 * 7 6 5 9 9 O 1.42100 * 106.40647 * 232.80320 * 7 6 5 10 10 N 1.65599 * 107.21687 * 119.26290 * 7 6 5 11 11 C 1.36936 * 119.99907 * 283.68489 * 10 7 6 12 12 H 1.08004 * 120.00163 * 28.81850 * 11 10 7 13 13 C 1.38818 * 120.00279 * 208.80724 * 11 10 7 14 14 N 1.31618 * 119.99617 * 357.68720 * 13 11 10 15 15 Si 1.86792 * 119.99989 * 177.68417 * 13 11 10 16 16 H 1.48498 * 109.47595 * 60.00262 * 15 13 11 17 17 H 1.48502 * 109.46956 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47263 * 299.99857 * 15 13 11 19 19 C 1.46500 * 119.99839 * 103.69289 * 10 7 6 20 20 C 1.55240 * 110.57882 * 213.32363 * 19 10 7 21 21 C 1.54891 * 102.58891 * 203.33710 * 20 19 10 22 22 C 1.54269 * 104.31088 * 37.93138 * 21 20 19 23 23 C 1.53867 * 106.59876 * 336.32390 * 22 21 20 24 24 C 1.38243 * 120.10925 * 0.25773 * 6 5 4 25 25 C 1.50707 * 119.96992 * 179.69881 * 24 6 5 26 26 C 1.38164 * 120.05682 * 359.44600 * 24 6 5 27 27 H 1.08995 * 109.47329 * 300.00260 * 1 2 3 28 28 H 1.09001 * 109.47132 * 59.99829 * 1 2 3 29 29 H 1.09002 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.02938 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.97532 * 180.02562 * 5 4 3 32 32 H 0.96998 * 120.00173 * 179.97438 * 14 13 11 33 33 H 1.08994 * 110.43596 * 335.90695 * 19 10 7 34 34 H 1.09001 * 110.89949 * 85.04468 * 20 19 10 35 35 H 1.09000 * 110.76755 * 321.56749 * 20 19 10 36 36 H 1.08996 * 110.48594 * 279.18567 * 21 20 19 37 37 H 1.08997 * 110.48609 * 156.67751 * 21 20 19 38 38 H 1.09005 * 110.02833 * 95.60897 * 22 21 20 39 39 H 1.08999 * 110.03019 * 216.98962 * 22 21 20 40 40 H 1.08999 * 110.03043 * 119.28330 * 23 22 21 41 41 H 1.09000 * 110.03453 * 240.66169 * 23 22 21 42 42 H 1.09001 * 109.46631 * 82.31907 * 25 24 6 43 43 H 1.08999 * 109.47100 * 202.31566 * 25 24 6 44 44 H 1.08998 * 109.47296 * 322.32472 * 25 24 6 45 45 H 1.08002 * 120.02684 * 180.25185 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0016 7 16 4.1018 5.2457 -0.0030 8 8 3.0756 6.2191 0.1327 9 8 5.0179 5.2284 -1.0891 10 7 5.0138 5.3323 1.3766 11 6 4.4099 5.5677 2.5828 12 1 3.3915 5.2486 2.7483 13 6 5.1068 6.2164 3.5931 14 7 6.3625 6.5645 3.4076 15 14 4.2624 6.5951 5.2157 16 1 3.8118 5.3287 5.8468 17 1 5.2155 7.2876 6.1198 18 1 3.0885 7.4709 4.9702 19 6 6.4666 5.1573 1.3064 20 6 6.9952 4.4633 2.5905 21 6 8.4799 4.9033 2.6253 22 6 8.4557 6.3658 2.1350 23 6 7.1757 6.5272 1.2965 24 6 4.0559 2.5171 -0.0070 25 6 5.5608 2.5982 -0.0144 26 6 3.4311 1.2848 -0.0003 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2127 2.3203 -0.0005 31 1 1.3340 4.5114 -0.0011 32 1 6.8494 7.0180 4.1134 33 1 6.7382 4.5808 0.4222 34 1 6.9154 3.3794 2.5076 35 1 6.4646 4.8245 3.4714 36 1 9.0766 4.2857 1.9540 37 1 8.8705 4.8479 3.6413 38 1 8.4320 7.0449 2.9873 39 1 9.3333 6.5683 1.5209 40 1 6.5308 7.2847 1.7419 41 1 7.4315 6.8088 0.2750 42 1 5.9212 2.7535 1.0025 43 1 5.9728 1.6689 -0.4080 44 1 5.8767 3.4308 -0.6429 45 1 4.0206 0.3799 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057653374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:52 Heat of formation + Delta-G solvation = -21.138045 kcal Electronic energy + Delta-G solvation = -29651.047430 eV Core-core repulsion = 25763.681150 eV Total energy + Delta-G solvation = -3887.366280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.13351 -38.17806 -37.59754 -36.30536 -34.84270 -33.46492 -32.42742 -31.38794 -30.58515 -27.68498 -27.39083 -26.84179 -26.07229 -24.14912 -22.77349 -21.36082 -19.74660 -19.16416 -18.51832 -17.81475 -17.34287 -16.69263 -16.30155 -16.16085 -15.87019 -14.88930 -14.46160 -14.41837 -14.32917 -13.91433 -13.80663 -13.41650 -13.14060 -12.99481 -12.58985 -12.41448 -12.17720 -12.04077 -11.97063 -11.77712 -11.33051 -11.17280 -11.09379 -11.04084 -10.86835 -10.83813 -10.72812 -10.57423 -10.30022 -10.10868 -9.89286 -9.81132 -9.60971 -9.51972 -8.83780 -8.65541 -8.44280 -8.28202 -7.33212 -5.86095 -3.89446 1.14744 1.46955 1.50897 3.12027 3.24804 3.29815 3.33880 3.63179 4.10336 4.45093 4.66798 4.74776 4.86606 4.96704 4.98130 5.08626 5.23073 5.28057 5.34067 5.43265 5.73661 5.83607 5.95717 6.01515 6.05329 6.07623 6.08841 6.14684 6.34093 6.39250 6.46702 6.60513 6.73815 6.81090 6.86405 6.89733 6.93706 7.04693 7.24026 7.32536 7.35044 7.45699 7.59517 7.77755 8.15280 8.25016 8.63354 9.02506 9.39288 10.78425 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013804 B = 0.004844 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.853095 B = 5778.649525 C = 6288.046965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.169 3.831 4 C -0.240 4.240 5 C 0.019 3.981 6 C -0.702 4.702 7 S 2.676 3.324 8 O -0.970 6.970 9 O -0.985 6.985 10 N -0.846 5.846 11 C -0.292 4.292 12 H 0.089 0.911 13 C 0.023 3.977 14 N -0.850 5.850 15 Si 0.913 3.087 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.170 3.830 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.075 4.075 23 C -0.094 4.094 24 C 0.065 3.935 25 C -0.178 4.178 26 C -0.180 4.180 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.011 0.989 35 H 0.141 0.859 36 H 0.032 0.968 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.114 0.886 41 H 0.000 1.000 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -9.207 -3.167 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.123 3.877 4 C -0.260 4.260 5 C 0.000 4.000 6 C -0.786 4.786 7 S 2.767 3.233 8 O -0.960 6.960 9 O -0.975 6.975 10 N -0.680 5.680 11 C -0.423 4.423 12 H 0.107 0.893 13 C -0.178 4.178 14 N -0.493 5.493 15 Si 0.741 3.259 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.064 3.936 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.114 4.114 23 C -0.133 4.133 24 C 0.064 3.936 25 C -0.234 4.234 26 C -0.199 4.199 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.158 0.842 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.131 0.869 41 H 0.018 0.982 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.340 -8.711 -3.738 10.425 hybrid contribution -0.913 -0.619 1.142 1.588 sum -5.253 -9.330 -2.596 11.017 Atomic orbital electron populations 1.23084 0.78312 1.03866 1.01689 1.86064 1.21564 1.27211 1.88146 1.19170 0.92409 0.83914 0.92166 1.21231 0.99945 0.92386 1.12429 1.20725 0.92638 0.97928 0.88729 1.31305 1.04734 1.22848 1.19688 1.02191 0.73448 0.74104 0.73521 1.93467 1.59607 1.56359 1.86581 1.93445 1.63244 1.87249 1.53546 1.52967 1.13222 1.82386 1.19392 1.18933 0.98535 1.35060 0.89756 0.89320 1.25164 0.96201 0.96873 0.99550 1.71152 1.07632 1.39068 1.31455 0.86215 0.79099 0.78654 0.81966 1.20495 1.21051 1.20117 1.21547 0.79153 0.96429 0.96509 1.23580 0.94941 0.93788 1.03120 1.22057 0.97360 0.96850 0.98228 1.21670 0.94974 0.96185 0.98543 1.22689 0.97111 1.00032 0.93514 1.19296 0.95792 0.90834 0.87680 1.21923 0.90153 1.05515 1.05769 1.20333 0.91217 0.98220 1.10103 0.92364 0.92486 0.88243 0.85117 0.84000 0.92715 0.92333 0.97100 0.84179 0.94899 0.93991 0.91932 0.96604 0.86872 0.98153 0.87784 0.90510 0.87551 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.18 10.50 -19.43 -0.20 -4.38 16 3 C 0.17 2.58 6.69 -39.22 -0.26 2.32 16 4 C -0.24 -3.61 9.04 -39.43 -0.36 -3.97 16 5 C 0.02 0.33 9.54 -39.60 -0.38 -0.04 16 6 C -0.70 -13.70 5.90 -39.56 -0.23 -13.94 16 7 S 2.68 59.94 4.92 -107.50 -0.53 59.42 16 8 O -0.97 -23.87 16.45 -57.17 -0.94 -24.81 16 9 O -0.98 -22.83 14.53 -57.17 -0.83 -23.66 16 10 N -0.85 -19.57 2.69 -51.64 -0.14 -19.71 16 11 C -0.29 -7.09 8.65 -15.06 -0.13 -7.22 16 12 H 0.09 2.13 7.83 -52.48 -0.41 1.72 16 13 C 0.02 0.54 3.84 -17.43 -0.07 0.47 16 14 N -0.85 -19.65 3.64 55.49 0.20 -19.45 16 15 Si 0.91 19.35 29.55 -169.99 -5.02 14.33 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.17 3.74 1.66 -66.08 -0.11 3.63 16 20 C -0.12 -2.43 5.35 -24.55 -0.13 -2.56 16 21 C -0.11 -2.04 6.64 -25.07 -0.17 -2.21 16 22 C -0.08 -1.51 5.96 -25.62 -0.15 -1.66 16 23 C -0.09 -2.12 5.63 -25.62 -0.14 -2.27 16 24 C 0.07 1.17 5.87 -104.64 -0.61 0.55 16 25 C -0.18 -2.98 7.87 36.01 0.28 -2.69 16 26 C -0.18 -2.88 9.61 -39.43 -0.38 -3.25 16 27 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.13 1.52 6.30 -52.48 -0.33 1.19 16 31 H 0.14 2.36 7.34 -52.49 -0.39 1.97 16 32 H 0.26 5.86 7.48 -40.82 -0.31 5.56 16 33 H 0.06 1.23 4.73 -51.93 -0.25 0.99 16 34 H 0.01 0.21 6.66 -51.93 -0.35 -0.14 16 35 H 0.14 3.23 3.79 -59.97 -0.23 3.01 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.27 6.54 -51.93 -0.34 0.93 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 2.82 5.81 -51.93 -0.30 2.52 16 41 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.10 1.79 5.12 -51.93 -0.27 1.53 16 43 H 0.08 1.03 8.03 -51.93 -0.42 0.62 16 44 H 0.11 1.95 4.08 -51.93 -0.21 1.74 16 45 H 0.13 1.83 8.05 -52.49 -0.42 1.41 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -28.13 343.44 -10.05 -38.18 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.91 Total: 6.54 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -1.85 Total: -31.62 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.06 Total: -39.16 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -1.97 Total: -52.86 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 59.94 SS G_CDS: -0.53 Total: 59.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.13 -10.05 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057653374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.041 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds