Wall clock time and date at job start Sat Apr 11 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35892 * 117.00035 * 2 1 4 4 C 1.38753 * 120.05897 * 0.02620 * 3 2 1 5 5 C 1.38122 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05679 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94288 * 180.02562 * 6 5 4 8 8 C 1.38244 * 120.10948 * 359.75108 * 6 5 4 9 9 C 1.38160 * 120.05741 * 0.50850 * 8 6 5 10 10 S 1.76200 * 120.02949 * 179.76927 * 9 8 6 11 11 O 1.42097 * 106.40057 * 1.18124 * 10 9 8 12 12 O 1.42101 * 106.40042 * 228.26199 * 10 9 8 13 13 N 1.65604 * 107.21855 * 114.72222 * 10 9 8 14 14 C 1.36933 * 119.99683 * 264.45075 * 13 10 9 15 15 H 1.07999 * 119.99704 * 128.18784 * 14 13 10 16 16 C 1.38809 * 120.00155 * 308.18889 * 14 13 10 17 17 N 1.31626 * 120.00039 * 154.28172 * 16 14 13 18 18 Si 1.86793 * 120.00152 * 334.28135 * 16 14 13 19 19 H 1.48501 * 109.47443 * 94.81049 * 18 16 14 20 20 H 1.48501 * 109.47326 * 214.81025 * 18 16 14 21 21 H 1.48499 * 109.47070 * 334.80793 * 18 16 14 22 22 C 1.46494 * 120.00033 * 84.45208 * 13 10 9 23 23 C 1.54963 * 110.92148 * 121.64559 * 22 13 10 24 24 C 1.54265 * 104.16109 * 156.29576 * 23 22 13 25 25 C 1.53880 * 106.63969 * 336.44829 * 24 23 22 26 26 C 1.54265 * 106.59688 * 359.97058 * 25 24 23 27 27 H 1.09006 * 109.46995 * 300.00415 * 1 2 3 28 28 H 1.09003 * 109.47203 * 59.99742 * 1 2 3 29 29 H 1.08994 * 109.47456 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.02967 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97110 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.47215 * 90.00210 * 7 6 5 33 33 H 1.09000 * 109.47185 * 210.00319 * 7 6 5 34 34 H 1.09003 * 109.46838 * 330.00128 * 7 6 5 35 35 H 1.07999 * 119.96780 * 180.25219 * 8 6 5 36 36 H 0.96998 * 119.99819 * 179.97438 * 17 16 14 37 37 H 1.09008 * 110.67275 * 358.34373 * 22 13 10 38 38 H 1.08997 * 110.47849 * 37.64435 * 23 22 13 39 39 H 1.09000 * 110.53223 * 274.97475 * 23 22 13 40 40 H 1.08995 * 110.03936 * 217.13789 * 24 23 22 41 41 H 1.09001 * 110.03210 * 95.75044 * 24 23 22 42 42 H 1.09000 * 110.03431 * 119.25856 * 25 24 23 43 43 H 1.08996 * 110.02896 * 240.64219 * 25 24 23 44 44 H 1.09002 * 110.48384 * 142.28822 * 26 25 24 45 45 H 1.09000 * 110.49192 * 264.80316 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9863 5.0184 0.0028 8 6 4.0561 2.5169 0.0068 9 6 3.4312 1.2847 0.0009 10 16 4.3930 -0.1917 0.0013 11 8 5.7537 0.2159 0.0365 12 8 3.8561 -1.0206 -1.0204 13 7 4.0998 -0.9672 1.4349 14 6 4.9467 -0.7878 2.4959 15 1 4.5517 -0.5027 3.4598 16 6 6.3127 -0.9725 2.3326 17 7 7.1603 -0.3487 3.1232 18 14 6.9482 -2.1062 0.9910 19 1 7.2659 -1.3093 -0.2212 20 1 8.1748 -2.7958 1.4655 21 1 5.9091 -3.1149 0.6620 22 6 2.9347 -1.8451 1.5679 23 6 3.3657 -3.2815 1.9584 24 6 2.1158 -3.8794 2.6365 25 6 1.2830 -2.6920 3.1508 26 6 2.0559 -1.4130 2.7680 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2129 2.3204 0.0006 31 1 1.3342 4.5113 0.0019 32 1 4.1509 5.3414 1.0307 33 1 4.9444 4.9384 -0.5108 34 1 3.3584 5.7465 -0.5108 35 1 5.1345 2.5750 0.0113 36 1 8.1148 -0.4781 3.0093 37 1 2.3526 -1.8543 0.6463 38 1 4.2016 -3.2520 2.6573 39 1 3.6297 -3.8561 1.0705 40 1 2.4118 -4.5165 3.4699 41 1 1.5381 -4.4552 1.9135 42 1 0.3015 -2.6912 2.6766 43 1 1.1742 -2.7534 4.2335 44 1 1.3648 -0.6244 2.4703 45 1 2.6782 -1.0802 3.5987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057653375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:58 Heat of formation + Delta-G solvation = -79.754623 kcal Electronic energy + Delta-G solvation = -30085.678693 eV Core-core repulsion = 26195.770607 eV Total energy + Delta-G solvation = -3889.908086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.90019 -37.92345 -37.40431 -35.79111 -34.46910 -34.08090 -31.86158 -31.76070 -30.88972 -28.05546 -27.70548 -26.96596 -25.74748 -24.11301 -22.74584 -21.19437 -19.80087 -19.59846 -18.87238 -18.21956 -17.12418 -16.21220 -16.03600 -15.89018 -15.52288 -15.00658 -14.83324 -14.28533 -14.12740 -13.89487 -13.78903 -13.57245 -13.45227 -13.00220 -12.67530 -12.46372 -12.11389 -12.07698 -11.99653 -11.92648 -11.62890 -11.41197 -11.27842 -11.06866 -10.84312 -10.71012 -10.66061 -10.59213 -10.48560 -10.28243 -10.07306 -9.96165 -9.83504 -9.64803 -9.30862 -8.89958 -8.70012 -7.88022 -7.73409 -6.54520 -4.16329 1.31532 1.68310 1.81332 3.33805 3.42936 3.47348 3.58871 3.81526 4.28803 4.45189 4.88697 4.91377 4.99030 5.02818 5.13553 5.23171 5.27723 5.29093 5.33612 5.42112 5.46893 5.52825 5.56555 5.77756 5.89017 5.96937 6.06924 6.08401 6.08958 6.16712 6.21956 6.22951 6.33547 6.41620 6.45610 6.47696 6.55719 6.59333 6.76346 6.83546 6.94645 7.00935 7.05094 7.37896 7.53390 7.79512 8.24163 9.00088 9.17759 10.47804 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.007386 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.846524 B = 3789.882346 C = 5351.838235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.207 3.793 4 C -0.230 4.230 5 C -0.051 4.051 6 C -0.152 4.152 7 C -0.106 4.106 8 C 0.010 3.990 9 C -0.674 4.674 10 S 2.530 3.470 11 O -0.960 6.960 12 O -0.994 6.994 13 N -0.819 5.819 14 C -0.265 4.265 15 H 0.094 0.906 16 C 0.103 3.897 17 N -0.811 5.811 18 Si 0.836 3.164 19 H -0.237 1.237 20 H -0.284 1.284 21 H -0.252 1.252 22 C 0.159 3.841 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.131 4.131 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.142 0.858 36 H 0.282 0.718 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.394 2.845 -1.681 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.160 3.840 4 C -0.250 4.250 5 C -0.069 4.069 6 C -0.153 4.153 7 C -0.163 4.163 8 C -0.009 4.009 9 C -0.753 4.753 10 S 2.632 3.368 11 O -0.949 6.949 12 O -0.984 6.984 13 N -0.643 5.643 14 C -0.414 4.414 15 H 0.112 0.888 16 C -0.115 4.115 17 N -0.446 5.446 18 Si 0.660 3.340 19 H -0.161 1.161 20 H -0.210 1.210 21 H -0.176 1.176 22 C 0.051 3.949 23 C -0.169 4.169 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.170 4.170 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.749 2.579 -2.589 12.305 hybrid contribution -0.333 0.428 -0.337 0.638 sum -12.082 3.007 -2.927 12.790 Atomic orbital electron populations 1.23077 0.78630 1.04133 1.01061 1.86230 1.21286 1.26293 1.87510 1.18339 0.90782 0.84340 0.90565 1.21177 0.99599 0.92587 1.11611 1.20862 0.93954 0.96733 0.95373 1.19916 0.93783 0.95692 1.05859 1.20687 1.00241 0.93135 1.02188 1.20747 1.00362 0.89735 0.90064 1.31298 1.04450 1.22408 1.17154 1.10825 0.75311 0.73542 0.77074 1.93437 1.32272 1.82773 1.86401 1.93375 1.80326 1.65763 1.58900 1.52950 1.32951 1.47575 1.30783 1.18697 0.86846 1.45014 0.90803 0.88809 1.25747 0.95969 0.94259 0.95557 1.69838 1.03849 1.33784 1.37126 0.87454 0.80337 0.81351 0.84881 1.16136 1.21037 1.17595 1.21782 0.86357 0.88835 0.97912 1.22711 0.98043 0.95541 1.00558 1.22064 0.96873 0.97362 0.99549 1.22038 0.98121 0.95486 1.00059 1.22667 0.98135 0.96206 1.00012 0.92594 0.92802 0.87974 0.85517 0.86041 0.91390 0.91558 0.92104 0.83987 0.90821 0.88726 0.89574 0.92345 0.92292 0.92613 0.92802 0.92446 0.92791 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.77 101.05 0.99 1.30 16 2 O -0.30 -5.34 5.71 -29.10 -0.17 -5.51 16 3 C 0.21 3.95 6.63 -39.21 -0.26 3.69 16 4 C -0.23 -3.60 9.04 -39.43 -0.36 -3.96 16 5 C -0.05 -0.76 9.69 -39.60 -0.38 -1.14 16 6 C -0.15 -2.51 5.88 -104.60 -0.62 -3.13 16 7 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16 8 C 0.01 0.20 9.20 -39.61 -0.36 -0.16 16 9 C -0.67 -14.79 5.92 -39.43 -0.23 -15.03 16 10 S 2.53 63.91 4.12 -107.50 -0.44 63.47 16 11 O -0.96 -26.55 11.42 -57.17 -0.65 -27.20 16 12 O -0.99 -26.35 16.11 -62.48 -1.01 -27.35 16 13 N -0.82 -19.52 2.19 -51.46 -0.11 -19.63 16 14 C -0.27 -6.78 7.98 -15.06 -0.12 -6.90 16 15 H 0.09 2.43 6.87 -52.49 -0.36 2.07 16 16 C 0.10 2.78 4.47 -17.43 -0.08 2.70 16 17 N -0.81 -22.40 13.97 55.49 0.78 -21.62 16 18 Si 0.84 21.65 25.43 -169.99 -4.32 17.33 16 19 H -0.24 -6.53 6.11 56.52 0.35 -6.19 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.25 -6.28 6.93 56.52 0.39 -5.88 16 22 C 0.16 3.22 2.38 -65.90 -0.16 3.06 16 23 C -0.13 -2.44 6.21 -25.03 -0.16 -2.60 16 24 C -0.12 -1.77 6.80 -25.61 -0.17 -1.95 16 25 C -0.12 -1.67 6.80 -25.61 -0.17 -1.84 16 26 C -0.13 -2.26 6.30 -25.07 -0.16 -2.42 16 27 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 28 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.13 1.53 6.30 -52.48 -0.33 1.20 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.14 2.91 7.33 -52.49 -0.38 2.52 16 36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 1.93 5.28 -51.92 -0.27 1.65 16 38 H 0.09 1.75 7.26 -51.93 -0.38 1.37 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 45 H 0.08 1.52 6.47 -51.93 -0.34 1.18 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -31.79 357.96 -9.08 -40.87 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.67 Total: 3.62 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -1.88 Total: -29.37 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.66 Total: -41.25 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -1.83 Total: -60.06 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.32 Total: 17.33 kcal Atomic # 16 Polarization: 63.91 SS G_CDS: -0.44 Total: 63.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.79 -9.08 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057653375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.881 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds