Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35892 * 117.00035 * 2 1 4 4 C 1.38753 * 120.05897 * 0.02620 * 3 2 1 5 5 C 1.38122 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05679 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94288 * 180.02562 * 6 5 4 8 8 C 1.38244 * 120.10948 * 359.75108 * 6 5 4 9 9 C 1.38160 * 120.05741 * 0.50850 * 8 6 5 10 10 S 1.76200 * 120.02949 * 179.76927 * 9 8 6 11 11 O 1.42097 * 106.40057 * 1.18124 * 10 9 8 12 12 O 1.42101 * 106.40042 * 228.26199 * 10 9 8 13 13 N 1.65604 * 107.21855 * 114.72222 * 10 9 8 14 14 C 1.36933 * 119.99683 * 264.45075 * 13 10 9 15 15 H 1.07999 * 119.99704 * 128.18784 * 14 13 10 16 16 C 1.38809 * 120.00155 * 308.18889 * 14 13 10 17 17 N 1.31626 * 120.00039 * 154.28172 * 16 14 13 18 18 Si 1.86793 * 120.00152 * 334.28135 * 16 14 13 19 19 H 1.48501 * 109.47443 * 94.81049 * 18 16 14 20 20 H 1.48501 * 109.47326 * 214.81025 * 18 16 14 21 21 H 1.48499 * 109.47070 * 334.80793 * 18 16 14 22 22 C 1.46494 * 120.00033 * 84.45208 * 13 10 9 23 23 C 1.54963 * 110.92148 * 121.64559 * 22 13 10 24 24 C 1.54265 * 104.16109 * 156.29576 * 23 22 13 25 25 C 1.53880 * 106.63969 * 336.44829 * 24 23 22 26 26 C 1.54265 * 106.59688 * 359.97058 * 25 24 23 27 27 H 1.09006 * 109.46995 * 300.00415 * 1 2 3 28 28 H 1.09003 * 109.47203 * 59.99742 * 1 2 3 29 29 H 1.08994 * 109.47456 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.02967 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97110 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.47215 * 90.00210 * 7 6 5 33 33 H 1.09000 * 109.47185 * 210.00319 * 7 6 5 34 34 H 1.09003 * 109.46838 * 330.00128 * 7 6 5 35 35 H 1.07999 * 119.96780 * 180.25219 * 8 6 5 36 36 H 0.96998 * 119.99819 * 179.97438 * 17 16 14 37 37 H 1.09008 * 110.67275 * 358.34373 * 22 13 10 38 38 H 1.08997 * 110.47849 * 37.64435 * 23 22 13 39 39 H 1.09000 * 110.53223 * 274.97475 * 23 22 13 40 40 H 1.08995 * 110.03936 * 217.13789 * 24 23 22 41 41 H 1.09001 * 110.03210 * 95.75044 * 24 23 22 42 42 H 1.09000 * 110.03431 * 119.25856 * 25 24 23 43 43 H 1.08996 * 110.02896 * 240.64219 * 25 24 23 44 44 H 1.09002 * 110.48384 * 142.28822 * 26 25 24 45 45 H 1.09000 * 110.49192 * 264.80316 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9863 5.0184 0.0028 8 6 4.0561 2.5169 0.0068 9 6 3.4312 1.2847 0.0009 10 16 4.3930 -0.1917 0.0013 11 8 5.7537 0.2159 0.0365 12 8 3.8561 -1.0206 -1.0204 13 7 4.0998 -0.9672 1.4349 14 6 4.9467 -0.7878 2.4959 15 1 4.5517 -0.5027 3.4598 16 6 6.3127 -0.9725 2.3326 17 7 7.1603 -0.3487 3.1232 18 14 6.9482 -2.1062 0.9910 19 1 7.2659 -1.3093 -0.2212 20 1 8.1748 -2.7958 1.4655 21 1 5.9091 -3.1149 0.6620 22 6 2.9347 -1.8451 1.5679 23 6 3.3657 -3.2815 1.9584 24 6 2.1158 -3.8794 2.6365 25 6 1.2830 -2.6920 3.1508 26 6 2.0559 -1.4130 2.7680 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2129 2.3204 0.0006 31 1 1.3342 4.5113 0.0019 32 1 4.1509 5.3414 1.0307 33 1 4.9444 4.9384 -0.5108 34 1 3.3584 5.7465 -0.5108 35 1 5.1345 2.5750 0.0113 36 1 8.1148 -0.4781 3.0093 37 1 2.3526 -1.8543 0.6463 38 1 4.2016 -3.2520 2.6573 39 1 3.6297 -3.8561 1.0705 40 1 2.4118 -4.5165 3.4699 41 1 1.5381 -4.4552 1.9135 42 1 0.3015 -2.6912 2.6766 43 1 1.1742 -2.7534 4.2335 44 1 1.3648 -0.6244 2.4703 45 1 2.6782 -1.0802 3.5987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057653375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -100.314055 kcal Electronic energy + Delta-G solvation = -30086.570217 eV Core-core repulsion = 26195.770607 eV Total energy + Delta-G solvation = -3890.799610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.19281 -39.42048 -38.71963 -37.85053 -36.55781 -35.85775 -33.69950 -33.08419 -32.22310 -29.40720 -28.75010 -28.52661 -26.85630 -25.96810 -24.19083 -22.49879 -21.35661 -21.07160 -20.68450 -19.64330 -18.84120 -17.85251 -17.62197 -17.52414 -16.88544 -16.71900 -16.23702 -15.99458 -15.51774 -15.39174 -15.28849 -15.01313 -14.81424 -14.57952 -14.08230 -14.01662 -13.75427 -13.61910 -13.25753 -13.22275 -13.16602 -13.05068 -12.76174 -12.61735 -12.47272 -12.41392 -12.25595 -12.03272 -11.89143 -11.82581 -11.76835 -11.71406 -11.28791 -11.15993 -11.01089 -10.76080 -10.30898 -9.61290 -9.16003 -8.61520 -6.21478 -0.21757 0.00773 0.35008 1.21040 1.33744 1.43978 2.22890 2.27767 2.38306 2.63331 2.85775 3.10176 3.58814 3.82367 3.95107 3.97389 3.99720 4.07561 4.19365 4.30969 4.40843 4.42996 4.43923 4.60026 4.66423 4.75676 4.79403 4.82437 4.82820 4.88539 4.93874 5.00368 5.02081 5.05871 5.14925 5.16797 5.21056 5.26941 5.35219 5.48902 5.53917 5.66155 5.69424 5.78135 5.98484 6.20052 6.31458 6.97515 7.22793 8.45899 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.007386 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.846524 B = 3789.882346 C = 5351.838235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.198 3.802 4 C -0.221 4.221 5 C -0.034 4.034 6 C -0.153 4.153 7 C -0.106 4.106 8 C -0.021 4.021 9 C -0.712 4.712 10 S 2.553 3.447 11 O -0.996 6.996 12 O -1.015 7.015 13 N -0.830 5.830 14 C -0.266 4.266 15 H 0.085 0.915 16 C 0.078 3.922 17 N -0.850 5.850 18 Si 0.845 3.155 19 H -0.268 1.268 20 H -0.266 1.266 21 H -0.244 1.244 22 C 0.145 3.855 23 C -0.137 4.137 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.282 0.718 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 4.255 -1.811 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.240 6.240 3 C 0.150 3.850 4 C -0.240 4.240 5 C -0.052 4.052 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.041 4.041 9 C -0.798 4.798 10 S 2.659 3.341 11 O -0.985 6.985 12 O -1.005 7.005 13 N -0.655 5.655 14 C -0.411 4.411 15 H 0.102 0.898 16 C -0.136 4.136 17 N -0.487 5.487 18 Si 0.669 3.331 19 H -0.194 1.194 20 H -0.191 1.191 21 H -0.167 1.167 22 C 0.038 3.962 23 C -0.177 4.177 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.163 4.163 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.189 0.811 31 H 0.191 0.809 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.506 3.886 -2.647 17.163 hybrid contribution 0.874 0.156 -0.512 1.025 sum -15.633 4.042 -3.160 16.453 Atomic orbital electron populations 1.23548 0.75487 1.06301 1.03056 1.86192 1.24571 1.26047 1.87218 1.18502 0.89932 0.86244 0.90304 1.21686 1.01646 0.91315 1.09323 1.21505 0.93316 0.98515 0.91865 1.20318 0.94933 0.95704 1.04447 1.20781 1.00472 0.91813 1.03180 1.20765 0.99860 0.91054 0.92381 1.30549 1.05995 1.20656 1.22559 1.08524 0.74663 0.74399 0.76542 1.93404 1.34571 1.83639 1.86900 1.93347 1.80596 1.67268 1.59244 1.52829 1.34184 1.49338 1.29162 1.18458 0.86604 1.44971 0.91040 0.89768 1.26018 0.96651 0.94980 0.95954 1.69855 1.03990 1.36007 1.38872 0.87277 0.81277 0.81161 0.83381 1.19357 1.19136 1.16718 1.22118 0.85716 0.89009 0.99316 1.22748 0.99669 0.95289 0.99981 1.22049 0.94947 0.97906 1.00170 1.22034 0.98640 0.92802 1.01362 1.22572 0.97729 0.98335 0.97638 0.90302 0.90928 0.86008 0.81051 0.80916 0.90542 0.92103 0.88660 0.86289 0.90756 0.88777 0.91845 0.93572 0.90945 0.90487 0.89814 0.90871 0.91594 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.77 113.37 1.11 1.29 16 2 O -0.33 -10.88 5.71 -83.05 -0.47 -11.35 16 3 C 0.20 7.16 6.63 22.51 0.15 7.31 16 4 C -0.22 -5.84 9.04 22.37 0.20 -5.64 16 5 C -0.03 -0.84 9.69 22.25 0.22 -0.63 16 6 C -0.15 -4.70 5.88 -19.85 -0.12 -4.82 16 7 C -0.11 -2.42 10.01 71.24 0.71 -1.70 16 8 C -0.02 -0.88 9.20 22.25 0.20 -0.67 16 9 C -0.71 -31.60 5.92 22.37 0.13 -31.47 16 10 S 2.55 134.50 4.12 -56.49 -0.23 134.26 16 11 O -1.00 -58.78 11.42 -128.00 -1.46 -60.24 16 12 O -1.01 -55.57 16.11 -122.92 -1.98 -57.55 16 13 N -0.83 -41.01 2.19 -316.73 -0.69 -41.70 16 14 C -0.27 -14.36 7.98 84.03 0.67 -13.69 16 15 H 0.08 4.64 6.87 -2.91 -0.02 4.62 16 16 C 0.08 4.45 4.47 84.86 0.38 4.83 16 17 N -0.85 -49.77 13.97 21.65 0.30 -49.46 16 18 Si 0.84 46.03 25.43 68.60 1.74 47.77 16 19 H -0.27 -15.81 6.11 99.48 0.61 -15.20 16 20 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.24 -12.70 6.93 99.48 0.69 -12.01 16 22 C 0.14 5.90 2.38 46.31 0.11 6.01 16 23 C -0.14 -5.24 6.21 31.69 0.20 -5.05 16 24 C -0.11 -3.06 6.80 31.32 0.21 -2.85 16 25 C -0.11 -2.74 6.80 31.32 0.21 -2.52 16 26 C -0.12 -4.11 6.30 31.67 0.20 -3.91 16 27 H 0.08 1.16 7.66 -2.38 -0.02 1.14 16 28 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 29 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.17 2.95 6.30 -2.91 -0.02 2.94 16 31 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 35 H 0.12 5.26 7.33 -2.91 -0.02 5.24 16 36 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.09 3.82 5.28 -2.38 -0.01 3.81 16 38 H 0.06 2.68 7.26 -2.39 -0.02 2.67 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.99 7.40 -2.39 -0.02 1.97 16 45 H 0.06 2.19 6.47 -2.39 -0.02 2.17 16 Total: -1.00 -76.49 357.96 2.67 -73.81 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.88 Total: 17.96 kcal Atomic # 6 Polarization: -58.09 SS G_CDS: 4.59 Total: -53.50 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -0.39 Total: -91.17 kcal Atomic # 8 Polarization: -125.22 SS G_CDS: -3.92 Total: -129.14 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.74 Total: 47.77 kcal Atomic # 16 Polarization: 134.50 SS G_CDS: -0.23 Total: 134.26 kcal Total: -76.49 2.67 -73.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057653375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.500 kcal (2) G-P(sol) polarization free energy of solvation -76.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds