Wall clock time and date at job start Sat Apr 11 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47182 * 2 1 4 4 C 1.53000 * 109.47182 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47182 * 179.97438 * 4 3 2 6 6 S 1.81398 * 109.46972 * 179.97438 * 5 4 3 7 7 O 1.42097 * 108.58154 * 65.51475 * 6 5 4 8 8 O 1.42097 * 108.58047 * 294.48433 * 6 5 4 9 9 C 1.81403 * 101.92279 * 180.02562 * 6 5 4 10 10 C 1.50699 * 109.47430 * 180.02562 * 9 6 5 11 11 O 1.21277 * 119.99788 * 359.97438 * 10 9 6 12 12 N 1.34773 * 120.00132 * 180.02562 * 10 9 6 13 13 C 1.39237 * 120.00231 * 185.18464 * 12 10 9 14 14 C 1.39486 * 119.82855 * 324.05356 * 13 12 10 15 15 C 1.36370 * 120.16515 * 180.29933 * 14 13 12 16 16 C 1.40876 * 119.82773 * 359.48291 * 15 14 13 17 17 C 1.41160 * 120.16091 * 180.25102 * 16 15 14 18 18 H 1.07993 * 119.99606 * 205.02487 * 17 16 15 19 19 C 1.39904 * 120.00083 * 25.02497 * 17 16 15 20 20 N 1.30878 * 119.99809 * 17.77995 * 19 17 16 21 21 Si 1.86795 * 120.00190 * 197.77450 * 19 17 16 22 22 H 1.48501 * 109.47012 * 94.98303 * 21 19 17 23 23 H 1.48500 * 109.47567 * 214.98476 * 21 19 17 24 24 H 1.48504 * 109.46924 * 334.98548 * 21 19 17 25 25 C 1.40865 * 119.67384 * 0.51475 * 16 15 14 26 26 C 1.36379 * 119.82607 * 359.73526 * 25 16 15 27 27 H 1.09004 * 109.46713 * 60.00327 * 1 2 3 28 28 H 1.09006 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47569 * 300.00139 * 1 2 3 30 30 H 1.09007 * 109.46974 * 239.99662 * 2 1 3 31 31 H 1.09007 * 109.46903 * 120.00166 * 2 1 3 32 32 H 1.09000 * 109.47227 * 60.00199 * 3 2 1 33 33 H 1.08995 * 109.47123 * 299.99611 * 3 2 1 34 34 H 1.09001 * 109.47202 * 59.99285 * 4 3 2 35 35 H 1.09007 * 109.46903 * 300.00166 * 4 3 2 36 36 H 1.09000 * 109.47227 * 60.00199 * 5 4 3 37 37 H 1.08995 * 109.47123 * 299.99611 * 5 4 3 38 38 H 1.09004 * 109.47113 * 59.99538 * 9 6 5 39 39 H 1.09004 * 109.46867 * 300.00444 * 9 6 5 40 40 H 0.97007 * 119.99967 * 5.17437 * 12 10 9 41 41 H 1.07998 * 119.91418 * 0.02562 * 14 13 12 42 42 H 1.08005 * 120.08508 * 179.69974 * 15 14 13 43 43 H 0.97000 * 119.99698 * 179.97438 * 20 19 17 44 44 H 1.07998 * 120.08712 * 179.71205 * 25 16 15 45 45 H 1.07999 * 119.91122 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 16 5.8940 2.8849 -0.0013 7 8 6.3468 2.3261 -1.2268 8 8 6.3467 2.3272 1.2247 9 6 6.2688 4.6597 -0.0013 10 6 7.7628 4.8577 -0.0019 11 8 8.5018 3.8962 -0.0019 12 7 8.2775 6.1033 -0.0015 13 6 9.6531 6.2882 -0.1111 14 6 10.5252 5.3851 0.4969 15 6 11.8737 5.5630 0.3991 16 6 12.3854 6.6562 -0.3273 17 6 13.7801 6.8441 -0.4375 18 1 14.1793 7.8311 -0.6179 19 6 14.6451 5.7516 -0.3129 20 7 14.1840 4.5337 -0.4432 21 14 16.4582 6.0312 0.0391 22 1 16.6988 5.9366 1.5014 23 1 17.2636 4.9998 -0.6628 24 1 16.8535 7.3796 -0.4415 25 6 11.4984 7.5639 -0.9385 26 6 10.1522 7.3757 -0.8277 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 3.7171 3.3990 0.8887 37 1 3.7164 3.3985 -0.8913 38 1 5.8411 5.1214 0.8887 39 1 5.8411 5.1214 -0.8913 40 1 7.6895 6.8711 0.0750 41 1 10.1313 4.5454 1.0501 42 1 12.5476 4.8656 0.8745 43 1 14.7839 3.7762 -0.3572 44 1 11.8834 8.4069 -1.4931 45 1 9.4709 8.0711 -1.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076125886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:10 Heat of formation + Delta-G solvation = -130.421949 kcal Electronic energy + Delta-G solvation = -26138.330086 eV Core-core repulsion = 22246.224900 eV Total energy + Delta-G solvation = -3892.105186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34803 -39.15970 -38.00734 -37.26847 -36.92552 -36.32620 -34.86512 -33.24481 -32.13792 -31.38507 -30.37053 -27.95108 -26.74072 -23.67876 -23.30153 -22.89558 -21.94702 -21.36760 -19.80912 -19.28752 -18.78095 -18.30691 -17.48898 -17.16088 -17.14120 -16.79000 -16.65128 -16.14305 -15.78749 -15.22115 -15.03256 -14.90179 -14.64830 -14.49099 -14.35027 -14.00994 -13.84688 -13.61813 -13.35521 -13.19306 -13.03451 -12.99765 -12.94739 -12.83970 -12.72897 -12.43010 -12.35307 -12.03642 -11.96614 -11.84257 -11.81082 -11.78566 -11.39436 -11.33451 -11.15436 -11.00512 -10.56840 -9.50026 -8.96083 -8.65576 -6.31413 -1.09937 0.73150 1.10964 1.35327 1.38484 1.52300 1.62232 1.82058 2.05921 2.19025 2.71507 2.90138 3.07773 3.54483 3.58838 3.70579 3.82453 4.01754 4.03779 4.23580 4.27987 4.33632 4.40806 4.45561 4.55600 4.58011 4.81470 4.87521 4.94049 5.00245 5.00375 5.06271 5.13206 5.16776 5.25667 5.31893 5.37107 5.41368 5.50473 5.64801 5.79675 6.02144 6.06512 6.28453 6.51165 6.64953 6.88509 6.96476 7.24538 8.30109 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.001960 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.029465 B =14281.976417 C =14908.921861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C -0.107 4.107 4 C -0.131 4.131 5 C -0.574 4.574 6 S 2.419 3.581 7 O -0.983 6.983 8 O -0.981 6.981 9 C -0.636 4.636 10 C 0.506 3.494 11 O -0.582 6.582 12 N -0.625 5.625 13 C -0.008 4.008 14 C -0.103 4.103 15 C -0.186 4.186 16 C 0.075 3.925 17 C -0.491 4.491 18 H 0.086 0.914 19 C 0.028 3.972 20 N -0.829 5.829 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.250 1.250 25 C -0.224 4.224 26 C -0.090 4.090 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.177 0.823 37 H 0.176 0.824 38 H 0.211 0.789 39 H 0.209 0.791 40 H 0.426 0.574 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.287 0.713 44 H 0.115 0.885 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.920 0.966 1.224 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C -0.145 4.145 4 C -0.170 4.170 5 C -0.708 4.708 6 S 2.606 3.394 7 O -0.980 6.980 8 O -0.979 6.979 9 C -0.765 4.765 10 C 0.294 3.706 11 O -0.463 6.463 12 N -0.270 5.270 13 C -0.102 4.102 14 C -0.123 4.123 15 C -0.206 4.206 16 C 0.072 3.928 17 C -0.520 4.520 18 H 0.104 0.896 19 C -0.187 4.187 20 N -0.454 5.454 21 Si 0.809 3.191 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.173 1.173 25 C -0.244 4.244 26 C -0.110 4.110 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.194 0.806 38 H 0.228 0.772 39 H 0.227 0.773 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.721 -0.627 1.192 26.755 hybrid contribution 0.640 0.439 0.179 0.797 sum -26.081 -0.188 1.372 26.118 Atomic orbital electron populations 1.21763 0.94951 1.01899 1.02286 1.21641 0.96708 0.97061 1.02082 1.21582 0.91662 0.97290 1.04000 1.21547 0.99297 0.92603 1.03578 1.30153 1.18064 1.06701 1.15855 1.07876 0.80404 0.77380 0.73745 1.93517 1.81405 1.75710 1.47341 1.93511 1.81401 1.75733 1.47211 1.30720 0.98147 1.29457 1.18138 1.20300 0.90088 0.83686 0.76538 1.90874 1.62575 1.41497 1.51338 1.42620 1.05686 1.08097 1.70608 1.17259 0.82497 1.01253 1.09164 1.20636 0.93675 0.98331 0.99689 1.20891 0.93696 1.01788 1.04239 1.18059 0.94343 0.91359 0.88996 1.19883 0.91621 0.95792 1.44734 0.89598 1.26945 1.06609 0.93834 0.91301 1.69962 1.39997 1.00583 1.34898 0.85103 0.75115 0.79688 0.79245 1.18859 1.19560 1.17296 1.20855 0.93098 1.03526 1.06938 1.20443 0.95405 0.97305 0.97829 0.92223 0.92799 0.92193 0.92272 0.92238 0.90002 0.90052 0.91045 0.90978 0.80570 0.80641 0.77197 0.77341 0.73455 0.88936 0.88837 0.90221 0.86738 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.14 -1.38 5.93 30.59 0.18 -1.20 16 3 C -0.11 -0.87 5.21 30.59 0.16 -0.71 16 4 C -0.13 -1.64 5.22 30.59 0.16 -1.48 16 5 C -0.57 -4.46 5.81 71.98 0.42 -4.04 16 6 S 2.42 55.89 3.96 -56.49 -0.22 55.67 16 7 O -0.98 -33.59 17.95 -125.75 -2.26 -35.85 16 8 O -0.98 -32.98 17.94 -125.75 -2.26 -35.24 16 9 C -0.64 -10.13 6.29 71.24 0.45 -9.68 16 10 C 0.51 17.20 7.68 87.66 0.67 17.87 16 11 O -0.58 -28.04 13.06 -0.14 0.00 -28.04 16 12 N -0.62 -19.97 5.30 -303.12 -1.61 -21.58 16 13 C -0.01 -0.37 6.30 38.56 0.24 -0.12 16 14 C -0.10 -5.54 8.62 22.13 0.19 -5.35 16 15 C -0.19 -10.81 8.63 22.48 0.19 -10.62 16 16 C 0.08 4.20 5.57 -21.27 -0.12 4.08 16 17 C -0.49 -27.07 9.03 23.39 0.21 -26.86 16 18 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 19 C 0.03 1.47 5.13 85.24 0.44 1.91 16 20 N -0.83 -47.00 10.98 21.82 0.24 -46.76 16 21 Si 0.99 39.67 29.59 68.60 2.03 41.70 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 25 C -0.22 -10.76 9.74 22.48 0.22 -10.54 16 26 C -0.09 -3.73 9.90 22.13 0.22 -3.51 16 27 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.18 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.21 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.21 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.43 8.48 8.82 -92.70 -0.82 7.67 16 41 H 0.09 5.16 6.24 -2.91 -0.02 5.14 16 42 H 0.09 5.79 6.19 -2.91 -0.02 5.77 16 43 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 44 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 45 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -95.55 388.51 0.45 -95.10 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.18 Total: 25.77 kcal Atomic # 6 Polarization: -55.11 SS G_CDS: 4.35 Total: -50.76 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.37 Total: -68.35 kcal Atomic # 8 Polarization: -94.61 SS G_CDS: -4.52 Total: -99.13 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 16 Polarization: 55.89 SS G_CDS: -0.22 Total: 55.67 kcal Total: -95.55 0.45 -95.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076125886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.324 kcal (2) G-P(sol) polarization free energy of solvation -95.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds