Wall clock time and date at job start Sat Apr 11 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.93070 * 2 1 4 4 C 1.38106 * 120.07076 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.03254 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.93135 * 0.02562 * 4 3 2 7 7 N 1.39923 * 120.06704 * 179.97438 * 6 4 3 8 8 C 1.34778 * 120.00082 * 123.76110 * 7 6 4 9 9 O 1.21288 * 119.99803 * 4.95290 * 8 7 6 10 10 C 1.50704 * 120.00056 * 184.94698 * 8 7 6 11 11 H 1.09002 * 109.47150 * 325.00139 * 10 8 7 12 12 C 1.53002 * 109.46998 * 85.00089 * 10 8 7 13 13 S 1.81400 * 109.47001 * 205.00116 * 10 8 7 14 14 O 1.42101 * 108.57842 * 299.48725 * 13 10 8 15 15 O 1.42099 * 108.57885 * 70.51713 * 13 10 8 16 16 C 1.81403 * 101.92154 * 185.00247 * 13 10 8 17 17 C 1.50696 * 109.47418 * 180.02562 * 16 13 10 18 18 H 1.08000 * 119.99861 * 359.97438 * 17 16 13 19 19 C 1.37868 * 120.00111 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00345 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47057 * 89.99709 * 21 19 17 23 23 H 1.48499 * 109.47044 * 209.99865 * 21 19 17 24 24 H 1.48504 * 109.46946 * 329.99551 * 21 19 17 25 25 C 1.38869 * 119.86085 * 0.25585 * 6 4 3 26 26 C 1.50695 * 120.03815 * 179.74765 * 25 6 4 27 27 C 1.38116 * 119.92491 * 359.47095 * 25 6 4 28 28 H 1.09003 * 109.46838 * 90.00580 * 1 2 3 29 29 H 1.08995 * 109.47205 * 210.00059 * 1 2 3 30 30 H 1.09000 * 109.47511 * 330.00335 * 1 2 3 31 31 H 1.08005 * 119.96196 * 359.97235 * 3 2 1 32 32 H 1.09006 * 109.47037 * 269.97223 * 5 4 3 33 33 H 1.08996 * 109.47730 * 29.97292 * 5 4 3 34 34 H 1.09004 * 109.47448 * 149.97628 * 5 4 3 35 35 H 0.97006 * 120.00362 * 303.47775 * 7 6 4 36 36 H 1.08992 * 109.46841 * 179.97438 * 12 10 8 37 37 H 1.08995 * 109.46679 * 300.00082 * 12 10 8 38 38 H 1.09004 * 109.46931 * 59.99545 * 12 10 8 39 39 H 1.09003 * 109.46725 * 300.00268 * 16 13 10 40 40 H 1.09003 * 109.47055 * 59.99774 * 16 13 10 41 41 H 0.96996 * 120.00228 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.47019 * 96.98068 * 26 25 6 43 43 H 1.09000 * 109.47279 * 216.97783 * 26 25 6 44 44 H 1.08995 * 109.46835 * 336.98324 * 26 25 6 45 45 H 1.07999 * 119.96220 * 180.27640 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.3291 2.5084 0.0011 6 6 4.2739 0.0000 0.0005 7 7 5.6731 0.0001 0.0005 8 6 6.3471 -0.6485 0.9709 9 8 5.7440 -1.3066 1.7921 10 6 7.8499 -0.5562 1.0355 11 1 8.2549 -0.5104 0.0245 12 6 8.2508 0.7052 1.8031 13 16 8.5094 -2.0166 1.8855 14 8 7.9794 -2.0512 3.2035 15 8 8.3417 -3.1466 1.0404 16 6 10.2782 -1.6260 1.9840 17 6 11.0036 -2.7518 2.6749 18 1 10.4554 -3.6157 3.0206 19 6 12.3669 -2.6784 2.8666 20 7 13.0344 -1.6262 2.4461 21 14 13.2660 -4.0736 3.7237 22 1 13.7115 -5.0687 2.7154 23 1 14.4481 -3.5334 4.4420 24 1 12.3530 -4.7280 4.6951 25 6 3.5781 -1.2018 -0.0054 26 6 4.3292 -2.5082 -0.0112 27 6 2.1970 -1.1984 -0.0002 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6552 2.1328 -0.0005 32 1 4.5110 2.8233 -1.0265 33 1 3.7383 3.2669 0.5144 34 1 5.2814 2.3798 0.5157 35 1 6.1582 0.4635 -0.7002 36 1 9.3377 0.7717 1.8501 37 1 7.8544 1.5827 1.2922 38 1 7.8457 0.6594 2.8140 39 1 10.6787 -1.4992 0.9782 40 1 10.4157 -0.7039 2.5487 41 1 13.9936 -1.5748 2.5806 42 1 4.4015 -2.8902 1.0071 43 1 3.7988 -3.2295 -0.6329 44 1 5.3304 -2.3499 -0.4118 45 1 1.6553 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:15 Heat of formation + Delta-G solvation = -94.781228 kcal Electronic energy + Delta-G solvation = -27838.725415 eV Core-core repulsion = 23948.165727 eV Total energy + Delta-G solvation = -3890.559688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.94316 -38.95993 -36.04818 -35.33801 -34.99693 -33.79847 -33.56924 -33.25206 -31.94242 -29.07490 -28.11345 -26.83436 -26.63142 -24.58224 -23.59022 -21.59841 -21.00798 -20.18752 -18.35109 -17.65260 -17.43144 -16.86857 -16.33939 -15.63778 -15.39860 -15.25253 -14.66552 -14.52969 -14.45626 -14.21231 -14.06749 -13.71128 -13.44836 -13.17369 -13.11302 -12.91137 -12.85775 -12.69675 -12.54409 -12.37865 -11.98243 -11.85727 -11.84167 -11.45706 -11.39968 -11.29259 -11.20716 -11.10483 -11.05364 -10.90157 -10.61835 -10.22218 -10.05602 -9.84635 -9.80008 -9.11341 -8.72791 -8.67751 -8.30122 -6.36045 -4.45177 0.78829 1.10363 1.24330 2.44124 2.90877 3.21774 3.27060 3.34268 3.52558 3.71976 4.20352 4.32686 4.50425 4.56359 4.61562 4.69490 4.81418 4.98967 5.03778 5.06727 5.10888 5.24163 5.28984 5.31212 5.35801 5.37812 5.46267 5.53557 5.60463 5.64187 5.70195 5.73188 5.83104 5.95217 6.05541 6.19636 6.28367 6.37874 6.43914 6.49169 6.59120 6.63508 6.89691 7.16414 7.46105 7.71613 8.00866 8.56475 9.22085 10.75822 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027771 B = 0.002779 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.995233 B =10072.411293 C =10702.028517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.087 4.087 5 C -0.115 4.115 6 C 0.127 3.873 7 N -0.670 5.670 8 C 0.543 3.457 9 O -0.499 6.499 10 C -0.631 4.631 11 H 0.148 0.852 12 C -0.133 4.133 13 S 2.413 3.587 14 O -0.927 6.927 15 O -0.950 6.950 16 C -0.402 4.402 17 C -0.529 4.529 18 H 0.073 0.927 19 C 0.076 3.924 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.265 1.265 25 C -0.058 4.058 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 9.885 -9.051 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.088 4.088 5 C -0.171 4.171 6 C 0.035 3.965 7 N -0.319 5.319 8 C 0.329 3.671 9 O -0.372 6.372 10 C -0.735 4.735 11 H 0.166 0.834 12 C -0.191 4.191 13 S 2.593 3.407 14 O -0.924 6.924 15 O -0.947 6.947 16 C -0.537 4.537 17 C -0.568 4.568 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.190 1.190 25 C -0.060 4.060 26 C -0.172 4.172 27 C -0.135 4.135 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.983 8.814 -8.181 22.472 hybrid contribution 1.196 0.468 -0.485 1.373 sum -17.787 9.282 -8.666 21.855 Atomic orbital electron populations 1.20767 0.91114 1.02789 1.02188 1.19887 0.96054 0.92971 0.99596 1.20684 0.92639 0.97622 1.02873 1.19840 0.93917 0.94109 1.00981 1.20751 1.00355 0.93759 1.02274 1.17253 0.82354 0.92624 1.04288 1.43276 1.04476 1.55356 1.28752 1.19604 0.87757 0.78898 0.80873 1.90880 1.69383 1.38369 1.38547 1.30991 1.01345 1.24777 1.16368 0.83392 1.21579 1.04050 0.93045 1.00398 1.08911 0.80818 0.75481 0.75489 1.93489 1.79164 1.84917 1.34848 1.93469 1.86978 1.44834 1.69405 1.27602 1.12122 1.07297 1.06700 1.20352 0.93394 1.02818 1.40224 0.90932 1.24913 0.96963 0.96424 0.94701 1.69933 1.08671 1.28335 1.44861 0.86352 0.79186 0.81459 0.79892 1.19866 1.20602 1.18974 1.19980 0.93766 0.94754 0.97533 1.20922 0.99412 0.93273 1.03612 1.20776 0.92812 0.97786 1.02172 0.91241 0.91502 0.91604 0.85852 0.91084 0.91217 0.91375 0.75353 0.88838 0.91010 0.90117 0.89656 0.89240 0.92180 0.89244 0.91788 0.92007 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.08 -0.87 5.88 -104.59 -0.62 -1.49 16 3 C -0.12 -1.21 9.35 -39.61 -0.37 -1.58 16 4 C -0.09 -0.96 5.90 -104.43 -0.62 -1.58 16 5 C -0.11 -0.96 9.74 36.01 0.35 -0.61 16 6 C 0.13 1.68 5.81 -83.70 -0.49 1.20 16 7 N -0.67 -8.45 3.76 -9.86 -0.04 -8.49 16 8 C 0.54 8.86 5.46 -10.98 -0.06 8.80 16 9 O -0.50 -10.11 12.42 -9.38 -0.12 -10.22 16 10 C -0.63 -9.66 3.15 -27.88 -0.09 -9.75 16 11 H 0.15 1.68 8.14 -51.92 -0.42 1.26 16 12 C -0.13 -1.74 8.88 37.16 0.33 -1.41 16 13 S 2.41 51.96 3.80 -107.50 -0.41 51.55 16 14 O -0.93 -23.01 17.21 -64.29 -1.11 -24.11 16 15 O -0.95 -22.85 18.10 -57.83 -1.05 -23.90 16 16 C -0.40 -9.32 4.95 36.00 0.18 -9.14 16 17 C -0.53 -14.51 9.13 -34.45 -0.31 -14.82 16 18 H 0.07 2.00 7.71 -52.49 -0.40 1.60 16 19 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 20 N -0.88 -24.21 13.29 55.43 0.74 -23.48 16 21 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.06 -0.81 5.49 -104.44 -0.57 -1.38 16 26 C -0.12 -1.71 8.23 36.00 0.30 -1.41 16 27 C -0.12 -1.37 9.38 -39.61 -0.37 -1.74 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.60 7.46 -51.93 -0.39 0.21 16 35 H 0.41 3.72 8.79 -40.82 -0.36 3.36 16 36 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.88 8.14 -51.92 -0.42 1.46 16 40 H 0.09 1.97 6.77 -51.92 -0.35 1.62 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 43 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 44 H 0.06 0.96 6.39 -51.93 -0.33 0.63 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -36.13 382.45 -10.04 -46.17 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.73 Total: 4.25 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: -2.08 Total: -33.40 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.70 Total: -31.96 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -2.27 Total: -58.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.41 Total: 51.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.13 -10.04 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.610 kcal (2) G-P(sol) polarization free energy of solvation -36.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds