Wall clock time and date at job start Sat Apr 11 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38129 * 120.03765 * 2 1 4 4 C 1.38265 * 120.07091 * 179.72338 * 3 2 1 5 5 C 1.38302 * 120.13947 * 0.23463 * 4 3 2 6 6 C 1.38091 * 120.07249 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.03466 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47011 * 299.99867 * 7 6 5 9 9 C 1.52994 * 109.46994 * 60.00225 * 7 6 5 10 10 C 1.38861 * 120.03387 * 180.21262 * 2 1 3 11 11 N 1.39923 * 120.06768 * 359.97438 * 10 2 1 12 12 C 1.34777 * 120.00047 * 60.15897 * 11 10 2 13 13 O 1.21287 * 120.00242 * 2.76856 * 12 11 10 14 14 C 1.50697 * 119.99818 * 182.76912 * 12 11 10 15 15 S 1.81398 * 109.47106 * 179.97438 * 14 12 11 16 16 O 1.42103 * 108.57893 * 294.48734 * 15 14 12 17 17 O 1.42102 * 108.57845 * 65.51361 * 15 14 12 18 18 C 1.81407 * 101.92162 * 180.02562 * 15 14 12 19 19 C 1.50703 * 109.46872 * 179.97438 * 18 15 14 20 20 H 1.07994 * 120.00287 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99533 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99567 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00218 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46902 * 89.99483 * 23 21 19 25 25 H 1.48496 * 109.47047 * 209.99739 * 23 21 19 26 26 H 1.48502 * 109.47103 * 329.99606 * 23 21 19 27 27 H 1.09003 * 109.47442 * 96.38373 * 1 2 3 28 28 H 1.09005 * 109.47573 * 216.38301 * 1 2 3 29 29 H 1.09005 * 109.47275 * 336.38324 * 1 2 3 30 30 H 1.08001 * 119.96493 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.92969 * 180.25689 * 4 3 2 32 32 H 1.07997 * 119.96348 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46630 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47144 * 60.00162 * 8 7 6 35 35 H 1.08998 * 109.47115 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47188 * 300.00053 * 8 7 6 37 37 H 1.09000 * 109.47499 * 59.99968 * 9 7 6 38 38 H 1.09005 * 109.47088 * 179.97438 * 9 7 6 39 39 H 1.09000 * 109.47014 * 299.99749 * 9 7 6 40 40 H 0.97000 * 119.99793 * 240.15896 * 11 10 2 41 41 H 1.08999 * 109.47734 * 300.00458 * 14 12 11 42 42 H 1.09007 * 109.47446 * 60.00107 * 14 12 11 43 43 H 1.08998 * 109.47268 * 299.99942 * 18 15 14 44 44 H 1.09005 * 109.46667 * 60.00291 * 18 15 14 45 45 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0058 5 6 4.2761 0.0009 0.0067 6 6 3.5908 -1.1979 0.0023 7 6 4.3491 -2.5003 0.0039 8 6 5.2342 -2.5765 -1.2417 9 6 5.2237 -2.5796 1.2567 10 6 2.2020 -1.2022 -0.0045 11 7 1.5045 -2.4152 -0.0084 12 6 0.6647 -2.7063 -1.0216 13 8 0.5514 -1.9399 -1.9547 14 6 -0.1335 -3.9843 -0.9949 15 16 -1.1619 -4.0860 -2.4858 16 8 -2.1242 -3.0413 -2.4442 17 8 -0.3093 -4.1993 -3.6170 18 6 -2.0163 -5.6679 -2.2444 19 6 -2.9354 -5.9255 -3.4107 20 1 -2.9987 -5.2095 -4.2166 21 6 -3.6945 -7.0759 -3.4492 22 7 -4.4961 -7.3009 -4.4672 23 14 -3.5843 -8.3147 -2.0554 24 1 -4.5914 -7.9814 -1.0162 25 1 -3.8491 -9.6775 -2.5824 26 1 -2.2248 -8.2699 -1.4596 27 1 -0.3634 -0.1143 -1.0213 28 1 -0.3634 -0.8274 0.6096 29 1 -0.3634 0.9416 0.4117 30 1 1.6584 2.1311 0.0004 31 1 4.1193 2.1329 0.0100 32 1 5.3561 0.0049 0.0116 33 1 3.6438 -3.3313 0.0004 34 1 5.9395 -1.7454 -1.2378 35 1 5.7823 -3.5186 -1.2409 36 1 4.6111 -2.5200 -2.1342 37 1 4.5932 -2.5253 2.1441 38 1 5.7719 -3.5218 1.2581 39 1 5.9290 -1.7485 1.2607 40 1 1.6254 -3.0465 0.7180 41 1 0.5455 -4.8363 -0.9626 42 1 -0.7725 -3.9953 -0.1118 43 1 -1.2822 -6.4706 -2.1756 44 1 -2.5996 -5.6291 -1.3243 45 1 -5.0304 -8.1100 -4.4941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:27 Heat of formation + Delta-G solvation = -90.512600 kcal Electronic energy + Delta-G solvation = -27701.276324 eV Core-core repulsion = 23810.901738 eV Total energy + Delta-G solvation = -3890.374587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00853 -38.97664 -36.11417 -35.92860 -35.18785 -34.92258 -33.26737 -32.09049 -30.86997 -29.83490 -28.87711 -27.42123 -26.90591 -23.50922 -23.22421 -22.49943 -20.72384 -19.70360 -18.39677 -17.93312 -17.38959 -17.25897 -16.52204 -15.90385 -15.60359 -15.36541 -15.27564 -14.61806 -14.47101 -14.22945 -14.15391 -13.96259 -13.79251 -13.57473 -13.37500 -12.75288 -12.71044 -12.56610 -12.53375 -12.42856 -12.31241 -11.92662 -11.64511 -11.62160 -11.37032 -11.19906 -11.15228 -11.08297 -10.93957 -10.89682 -10.59600 -10.43626 -10.27752 -9.96111 -9.85926 -9.38031 -8.85305 -8.74217 -8.55547 -6.31979 -4.40832 0.63294 1.06404 1.18775 2.34508 2.81811 3.11181 3.15833 3.20381 3.51797 3.61551 4.18629 4.21811 4.32811 4.46334 4.50018 4.74477 4.76539 4.86682 4.90153 4.92247 5.03280 5.10670 5.16173 5.23839 5.29526 5.33977 5.38357 5.41133 5.53979 5.62164 5.68274 5.71027 5.80696 5.88560 6.00452 6.09914 6.15661 6.20824 6.22657 6.26124 6.36191 6.41165 6.82277 7.04466 7.16070 7.89543 8.01922 8.63073 9.21488 10.79235 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.002979 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.331538 B = 9396.309598 C =10096.931683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.116 4.116 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.059 4.059 8 C -0.144 4.144 9 C -0.142 4.142 10 C 0.135 3.865 11 N -0.673 5.673 12 C 0.545 3.455 13 O -0.503 6.503 14 C -0.681 4.681 15 S 2.443 3.557 16 O -0.931 6.931 17 O -0.931 6.931 18 C -0.459 4.459 19 C -0.530 4.530 20 H 0.090 0.910 21 C 0.088 3.912 22 N -0.879 5.879 23 Si 0.882 3.118 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.263 1.263 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.410 0.590 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.704 10.300 16.793 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.133 4.133 6 C -0.079 4.079 7 C -0.078 4.078 8 C -0.201 4.201 9 C -0.200 4.200 10 C 0.043 3.957 11 N -0.322 5.322 12 C 0.331 3.669 13 O -0.377 6.377 14 C -0.803 4.803 15 S 2.621 3.379 16 O -0.928 6.928 17 O -0.928 6.928 18 C -0.593 4.593 19 C -0.569 4.569 20 H 0.108 0.892 21 C -0.119 4.119 22 N -0.515 5.515 23 Si 0.708 3.292 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.188 1.188 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.247 0.753 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.445 11.337 15.380 26.557 hybrid contribution 0.138 -1.671 1.852 2.498 sum 18.584 9.665 17.232 27.124 Atomic orbital electron populations 1.20945 0.90628 1.02290 1.04119 1.19992 0.96572 0.92004 0.98172 1.20929 0.94182 0.97121 1.01209 1.21125 0.94180 0.97979 1.00076 1.20775 0.99673 0.91354 1.01483 1.19864 0.91779 0.95691 1.00518 1.20099 0.97022 0.94434 0.96238 1.21842 0.99325 1.01825 0.97134 1.21859 0.99438 1.02002 0.96672 1.17228 0.89762 0.85041 1.03713 1.43250 1.44526 1.19175 1.25259 1.19465 0.79214 0.86113 0.82080 1.90874 1.64191 1.49653 1.32958 1.31241 1.15961 1.03558 1.29587 1.07911 0.75701 0.79001 0.75257 1.93493 1.59059 1.54917 1.85338 1.93499 1.67756 1.87392 1.44124 1.28106 1.08988 1.15172 1.07039 1.20097 1.23906 1.08840 1.04009 0.89230 1.24896 0.93851 0.97269 0.95883 1.69863 1.24973 1.26810 1.29806 0.86746 0.79197 0.80870 0.82415 1.19558 1.20551 1.18792 0.89065 0.91936 0.91509 0.85664 0.85892 0.85830 0.90474 0.92395 0.92219 0.92173 0.92642 0.92242 0.92340 0.75308 0.82529 0.82498 0.89676 0.90087 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.47 36.00 0.31 -1.27 16 2 C -0.07 -0.82 5.53 -104.43 -0.58 -1.40 16 3 C -0.12 -1.23 9.67 -39.61 -0.38 -1.61 16 4 C -0.12 -1.07 10.04 -39.55 -0.40 -1.47 16 5 C -0.11 -1.07 8.71 -39.61 -0.35 -1.42 16 6 C -0.08 -0.81 4.80 -104.43 -0.50 -1.31 16 7 C -0.06 -0.52 3.05 -91.77 -0.28 -0.80 16 8 C -0.14 -1.28 9.01 37.16 0.33 -0.94 16 9 C -0.14 -0.95 9.01 37.15 0.33 -0.61 16 10 C 0.13 1.65 5.65 -83.69 -0.47 1.18 16 11 N -0.67 -7.67 3.64 -9.86 -0.04 -7.71 16 12 C 0.55 8.25 6.58 -10.99 -0.07 8.18 16 13 O -0.50 -9.88 13.29 2.54 0.03 -9.84 16 14 C -0.68 -8.95 6.29 36.00 0.23 -8.73 16 15 S 2.44 49.96 3.88 -107.50 -0.42 49.54 16 16 O -0.93 -22.06 17.95 -59.52 -1.07 -23.13 16 17 O -0.93 -22.40 17.95 -59.53 -1.07 -23.47 16 18 C -0.46 -9.81 4.63 36.01 0.17 -9.64 16 19 C -0.53 -14.74 9.68 -34.44 -0.33 -15.07 16 20 H 0.09 2.74 7.96 -52.49 -0.42 2.33 16 21 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 22 N -0.88 -26.03 13.96 55.43 0.77 -25.25 16 23 Si 0.88 19.75 27.47 -169.99 -4.67 15.08 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 27 H 0.09 1.43 6.69 -51.93 -0.35 1.09 16 28 H 0.06 0.75 7.41 -51.93 -0.38 0.37 16 29 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.90 7.10 -52.49 -0.37 0.53 16 33 H 0.08 0.67 6.66 -51.93 -0.35 0.33 16 34 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 40 H 0.41 3.14 8.44 -40.82 -0.34 2.79 16 41 H 0.16 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.16 1.43 8.14 -51.92 -0.42 1.01 16 43 H 0.09 1.61 7.20 -51.93 -0.37 1.23 16 44 H 0.08 1.50 7.57 -51.92 -0.39 1.10 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -37.98 380.61 -9.52 -47.50 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.71 Total: 4.13 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -2.09 Total: -32.58 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.74 Total: -32.96 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -2.10 Total: -56.44 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Atomic # 16 Polarization: 49.96 SS G_CDS: -0.42 Total: 49.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.98 -9.52 -47.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.015 kcal (2) G-P(sol) polarization free energy of solvation -37.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds