Wall clock time and date at job start Sat Apr 11 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38129 * 120.03765 * 2 1 4 4 C 1.38265 * 120.07091 * 179.72338 * 3 2 1 5 5 C 1.38302 * 120.13947 * 0.23463 * 4 3 2 6 6 C 1.38091 * 120.07249 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.03466 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47011 * 299.99867 * 7 6 5 9 9 C 1.52994 * 109.46994 * 60.00225 * 7 6 5 10 10 C 1.38861 * 120.03387 * 180.21262 * 2 1 3 11 11 N 1.39923 * 120.06768 * 359.97438 * 10 2 1 12 12 C 1.34777 * 120.00047 * 60.15897 * 11 10 2 13 13 O 1.21287 * 120.00242 * 2.76856 * 12 11 10 14 14 C 1.50697 * 119.99818 * 182.76912 * 12 11 10 15 15 S 1.81398 * 109.47106 * 179.97438 * 14 12 11 16 16 O 1.42103 * 108.57893 * 294.48734 * 15 14 12 17 17 O 1.42102 * 108.57845 * 65.51361 * 15 14 12 18 18 C 1.81407 * 101.92162 * 180.02562 * 15 14 12 19 19 C 1.50703 * 109.46872 * 179.97438 * 18 15 14 20 20 H 1.07994 * 120.00287 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99533 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99567 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00218 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46902 * 89.99483 * 23 21 19 25 25 H 1.48496 * 109.47047 * 209.99739 * 23 21 19 26 26 H 1.48502 * 109.47103 * 329.99606 * 23 21 19 27 27 H 1.09003 * 109.47442 * 96.38373 * 1 2 3 28 28 H 1.09005 * 109.47573 * 216.38301 * 1 2 3 29 29 H 1.09005 * 109.47275 * 336.38324 * 1 2 3 30 30 H 1.08001 * 119.96493 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.92969 * 180.25689 * 4 3 2 32 32 H 1.07997 * 119.96348 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46630 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47144 * 60.00162 * 8 7 6 35 35 H 1.08998 * 109.47115 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47188 * 300.00053 * 8 7 6 37 37 H 1.09000 * 109.47499 * 59.99968 * 9 7 6 38 38 H 1.09005 * 109.47088 * 179.97438 * 9 7 6 39 39 H 1.09000 * 109.47014 * 299.99749 * 9 7 6 40 40 H 0.97000 * 119.99793 * 240.15896 * 11 10 2 41 41 H 1.08999 * 109.47734 * 300.00458 * 14 12 11 42 42 H 1.09007 * 109.47446 * 60.00107 * 14 12 11 43 43 H 1.08998 * 109.47268 * 299.99942 * 18 15 14 44 44 H 1.09005 * 109.46667 * 60.00291 * 18 15 14 45 45 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 0.0058 5 6 4.2761 0.0009 0.0067 6 6 3.5908 -1.1979 0.0023 7 6 4.3491 -2.5003 0.0039 8 6 5.2342 -2.5765 -1.2417 9 6 5.2237 -2.5796 1.2567 10 6 2.2020 -1.2022 -0.0045 11 7 1.5045 -2.4152 -0.0084 12 6 0.6647 -2.7063 -1.0216 13 8 0.5514 -1.9399 -1.9547 14 6 -0.1335 -3.9843 -0.9949 15 16 -1.1619 -4.0860 -2.4858 16 8 -2.1242 -3.0413 -2.4442 17 8 -0.3093 -4.1993 -3.6170 18 6 -2.0163 -5.6679 -2.2444 19 6 -2.9354 -5.9255 -3.4107 20 1 -2.9987 -5.2095 -4.2166 21 6 -3.6945 -7.0759 -3.4492 22 7 -4.4961 -7.3009 -4.4672 23 14 -3.5843 -8.3147 -2.0554 24 1 -4.5914 -7.9814 -1.0162 25 1 -3.8491 -9.6775 -2.5824 26 1 -2.2248 -8.2699 -1.4596 27 1 -0.3634 -0.1143 -1.0213 28 1 -0.3634 -0.8274 0.6096 29 1 -0.3634 0.9416 0.4117 30 1 1.6584 2.1311 0.0004 31 1 4.1193 2.1329 0.0100 32 1 5.3561 0.0049 0.0116 33 1 3.6438 -3.3313 0.0004 34 1 5.9395 -1.7454 -1.2378 35 1 5.7823 -3.5186 -1.2409 36 1 4.6111 -2.5200 -2.1342 37 1 4.5932 -2.5253 2.1441 38 1 5.7719 -3.5218 1.2581 39 1 5.9290 -1.7485 1.2607 40 1 1.6254 -3.0465 0.7180 41 1 0.5455 -4.8363 -0.9626 42 1 -0.7725 -3.9953 -0.1118 43 1 -1.2822 -6.4706 -2.1756 44 1 -2.5996 -5.6291 -1.3243 45 1 -5.0304 -8.1100 -4.4941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:26 Heat of formation + Delta-G solvation = -119.302843 kcal Electronic energy + Delta-G solvation = -27702.524763 eV Core-core repulsion = 23810.901738 eV Total energy + Delta-G solvation = -3891.623025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95804 -39.96149 -37.84268 -36.84802 -36.62312 -35.99084 -35.28408 -32.97057 -32.02166 -31.61327 -29.77235 -27.98964 -27.78128 -25.16677 -24.18881 -23.53407 -21.70415 -20.43654 -19.80413 -19.47822 -18.86249 -18.52148 -17.54381 -17.13069 -17.09527 -16.83266 -16.35359 -15.97990 -15.81598 -15.29859 -15.02480 -14.83066 -14.74426 -14.64329 -14.38906 -14.23390 -14.14554 -13.69357 -13.47547 -13.28374 -13.13781 -13.00623 -12.96196 -12.90373 -12.68377 -12.56398 -12.46054 -12.28624 -12.01915 -11.90877 -11.83671 -11.79819 -11.62242 -11.49200 -11.11470 -10.89231 -10.87467 -9.53368 -9.40223 -8.39989 -6.57800 -0.93493 0.24286 0.39362 1.24906 1.37816 1.43505 1.54111 1.79140 2.14631 2.33161 2.73948 2.90768 2.97465 3.23592 3.43708 3.62426 3.79531 3.96551 4.00280 4.19524 4.21072 4.28470 4.34936 4.36903 4.41279 4.48325 4.61226 4.62162 4.64077 4.68695 4.81097 4.93251 5.00046 5.01168 5.12563 5.22831 5.27001 5.27361 5.36008 5.38794 5.51100 5.58931 5.60299 5.86815 6.02101 6.15635 6.48470 6.91643 7.09304 8.76350 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.002979 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.331538 B = 9396.309598 C =10096.931683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.091 4.091 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.081 4.081 7 C -0.060 4.060 8 C -0.144 4.144 9 C -0.137 4.137 10 C 0.109 3.891 11 N -0.648 5.648 12 C 0.535 3.465 13 O -0.559 6.559 14 C -0.643 4.643 15 S 2.432 3.568 16 O -0.985 6.985 17 O -0.987 6.987 18 C -0.467 4.467 19 C -0.558 4.558 20 H 0.027 0.973 21 C 0.015 3.985 22 N -0.941 5.941 23 Si 0.959 3.041 24 H -0.254 1.254 25 H -0.283 1.283 26 H -0.213 1.213 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.430 0.570 41 H 0.212 0.788 42 H 0.212 0.788 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.822 8.983 21.739 32.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.131 4.131 5 C -0.135 4.135 6 C -0.082 4.082 7 C -0.079 4.079 8 C -0.201 4.201 9 C -0.194 4.194 10 C 0.016 3.984 11 N -0.298 5.298 12 C 0.322 3.678 13 O -0.437 6.437 14 C -0.773 4.773 15 S 2.619 3.381 16 O -0.982 6.982 17 O -0.984 6.984 18 C -0.600 4.600 19 C -0.596 4.596 20 H 0.045 0.955 21 C -0.185 4.185 22 N -0.579 5.579 23 Si 0.777 3.223 24 H -0.179 1.179 25 H -0.209 1.209 26 H -0.135 1.135 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.271 0.729 41 H 0.229 0.771 42 H 0.229 0.771 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.553 10.022 20.303 31.260 hybrid contribution -0.725 -1.107 0.309 1.359 sum 20.828 8.916 20.612 30.629 Atomic orbital electron populations 1.20870 0.91486 1.03436 1.01905 1.20155 0.96340 0.93151 0.99620 1.21199 0.95137 0.97127 1.01155 1.21491 0.93745 0.99320 0.98549 1.21134 1.00960 0.90980 1.00405 1.20135 0.91223 0.97090 0.99789 1.20166 0.97189 0.93419 0.97108 1.21850 0.99195 1.03065 0.96021 1.21817 0.99229 1.02885 0.95442 1.17474 0.90661 0.85045 1.05177 1.42978 1.42929 1.19302 1.24600 1.19799 0.79711 0.86175 0.82160 1.90883 1.66061 1.51449 1.35320 1.30762 1.15896 1.04949 1.25719 1.07440 0.75641 0.78041 0.77022 1.93430 1.61514 1.56179 1.87073 1.93432 1.68483 1.87631 1.48895 1.28088 1.09298 1.16882 1.05686 1.20393 1.26039 1.08115 1.05080 0.95453 1.26232 0.92808 0.99957 0.99521 1.70057 1.26660 1.28045 1.33103 0.85563 0.82196 0.76408 0.78100 1.17872 1.20855 1.13536 0.92862 0.91532 0.89800 0.84384 0.83148 0.83437 0.90459 0.91366 0.90888 0.95073 0.92252 0.91163 0.91730 0.72889 0.77136 0.77084 0.85782 0.85907 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 8.47 71.23 0.60 -2.51 16 2 C -0.09 -2.23 5.53 -19.74 -0.11 -2.34 16 3 C -0.13 -2.57 9.67 22.25 0.22 -2.36 16 4 C -0.11 -1.84 10.04 22.29 0.22 -1.61 16 5 C -0.12 -1.88 8.71 22.25 0.19 -1.68 16 6 C -0.08 -1.52 4.80 -19.74 -0.09 -1.61 16 7 C -0.06 -0.88 3.05 -11.54 -0.04 -0.91 16 8 C -0.14 -2.25 9.01 71.98 0.65 -1.60 16 9 C -0.14 -1.29 9.01 71.98 0.65 -0.65 16 10 C 0.11 2.49 5.65 38.15 0.22 2.71 16 11 N -0.65 -13.11 3.64 -303.50 -1.10 -14.22 16 12 C 0.53 15.30 6.58 87.66 0.58 15.87 16 13 O -0.56 -22.60 13.29 -0.17 0.00 -22.60 16 14 C -0.64 -14.32 6.29 71.24 0.45 -13.87 16 15 S 2.43 100.04 3.88 -56.49 -0.22 99.82 16 16 O -0.98 -49.14 17.95 -125.76 -2.26 -51.40 16 17 O -0.99 -49.82 17.95 -125.74 -2.26 -52.07 16 18 C -0.47 -18.97 4.63 71.24 0.33 -18.64 16 19 C -0.56 -32.17 9.68 25.60 0.25 -31.92 16 20 H 0.03 1.84 7.96 -2.91 -0.02 1.81 16 21 C 0.01 0.85 5.47 84.66 0.46 1.31 16 22 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 23 Si 0.96 38.76 27.47 68.60 1.88 40.65 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.21 -6.90 6.54 99.48 0.65 -6.25 16 27 H 0.05 1.79 6.69 -2.39 -0.02 1.78 16 28 H 0.07 1.57 7.41 -2.38 -0.02 1.55 16 29 H 0.08 1.75 8.04 -2.38 -0.02 1.73 16 30 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.15 1.61 7.10 -2.91 -0.02 1.59 16 33 H 0.08 1.10 6.66 -2.39 -0.02 1.08 16 34 H 0.07 0.89 7.39 -2.39 -0.02 0.88 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.06 0.54 7.39 -2.39 -0.02 0.52 16 40 H 0.43 4.76 8.44 -92.71 -0.78 3.98 16 41 H 0.21 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.21 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.12 4.10 7.20 -2.39 -0.02 4.08 16 44 H 0.12 4.00 7.57 -2.39 -0.02 3.98 16 45 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -95.72 380.61 1.08 -94.64 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.16 Total: 23.17 kcal Atomic # 6 Polarization: -64.39 SS G_CDS: 4.58 Total: -59.81 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -0.81 Total: -72.39 kcal Atomic # 8 Polarization: -121.56 SS G_CDS: -4.52 Total: -126.07 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.88 Total: 40.65 kcal Atomic # 16 Polarization: 100.04 SS G_CDS: -0.22 Total: 99.82 kcal Total: -95.72 1.08 -94.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.662 kcal (2) G-P(sol) polarization free energy of solvation -95.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds