Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00426 * 2 1 4 4 C 1.52995 * 109.47096 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47201 * 65.00639 * 4 3 2 6 6 C 1.46507 * 119.99776 * 269.99508 * 5 4 3 7 7 C 1.50703 * 109.46995 * 270.00234 * 6 5 4 8 8 H 1.07993 * 120.00251 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99638 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99685 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00216 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47184 * 90.00460 * 11 9 7 13 13 H 1.48503 * 109.47478 * 210.00258 * 11 9 7 14 14 H 1.48495 * 109.47246 * 330.00627 * 11 9 7 15 15 C 1.34771 * 120.00245 * 89.99655 * 5 4 3 16 16 O 1.21285 * 119.99935 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00290 * 359.97438 * 15 5 4 18 18 C 1.53001 * 109.47491 * 179.97438 * 17 15 5 19 19 C 1.50702 * 109.47143 * 179.97438 * 18 17 15 20 20 O 1.21446 * 119.99769 * 359.97438 * 19 18 17 21 21 C 1.41231 * 119.99993 * 179.97438 * 19 18 17 22 22 C 1.37185 * 125.48165 * 179.97438 * 21 19 18 23 23 C 1.37194 * 113.24220 * 179.97438 * 22 21 19 24 24 C 1.34027 * 115.15055 * 0.02562 * 23 22 21 25 25 C 1.50703 * 124.50003 * 179.97438 * 24 23 22 26 26 S 1.70611 * 110.99731 * 359.97438 * 24 23 22 27 27 H 1.08995 * 109.46738 * 299.99900 * 1 2 3 28 28 H 1.08995 * 109.47035 * 59.99426 * 1 2 3 29 29 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46434 * 60.00061 * 3 2 1 31 31 H 1.08995 * 109.46871 * 300.00598 * 3 2 1 32 32 H 1.08998 * 109.47618 * 304.99726 * 4 3 2 33 33 H 1.09002 * 109.46891 * 185.00442 * 4 3 2 34 34 H 1.08999 * 109.46701 * 29.99747 * 6 5 4 35 35 H 1.08999 * 109.47076 * 150.00282 * 6 5 4 36 36 H 0.97008 * 119.99868 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.47229 * 59.99688 * 17 15 5 38 38 H 1.09002 * 109.46814 * 300.00013 * 17 15 5 39 39 H 1.09000 * 109.46829 * 59.99970 * 18 17 15 40 40 H 1.09002 * 109.47110 * 299.99842 * 18 17 15 41 41 H 1.07999 * 123.37624 * 0.02562 * 22 21 19 42 42 H 1.07997 * 122.42770 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46620 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47001 * 300.02019 * 25 24 23 45 45 H 1.09001 * 109.47163 * 60.02718 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5010 -1.2979 -0.9450 8 1 6.2198 -0.5461 -0.6546 9 6 5.8605 -2.6289 -0.9529 10 7 7.0784 -2.9830 -0.6052 11 14 4.6174 -3.9293 -1.4560 12 1 4.7020 -4.1543 -2.9215 13 1 4.9120 -5.1980 -0.7427 14 1 3.2501 -3.4694 -1.1040 15 6 4.2615 1.3338 -2.3218 16 8 4.6255 0.8203 -3.3585 17 6 4.1278 2.8320 -2.2293 18 6 4.5103 3.4619 -3.5701 19 6 4.3759 4.9601 -3.4778 20 8 4.0093 5.4741 -2.4403 21 6 4.6764 5.7664 -4.5977 22 6 4.5931 7.1351 -4.6388 23 6 4.9447 7.6626 -5.8555 24 6 5.3038 6.7646 -6.7834 25 6 5.7273 7.1108 -8.1876 26 16 5.2177 5.1773 -6.1636 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0890 34 1 3.3852 -1.3629 -0.6735 35 1 3.9120 -1.2114 -2.3670 36 1 7.3313 -3.9195 -0.6104 37 1 4.7897 3.2084 -1.4494 38 1 3.0969 3.0904 -1.9869 39 1 3.8486 3.0855 -4.3503 40 1 5.5412 3.2035 -3.8120 41 1 4.2828 7.7370 -3.7975 42 1 4.9329 8.7246 -6.0515 43 1 5.9646 6.1964 -8.7313 44 1 4.9158 7.6340 -8.6933 45 1 6.6079 7.7523 -8.1538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -87.893939 kcal Electronic energy + Delta-G solvation = -26742.579701 eV Core-core repulsion = 22852.318669 eV Total energy + Delta-G solvation = -3890.261033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.04661 -39.10748 -37.86846 -37.53695 -34.93838 -33.01382 -32.55720 -32.20113 -29.82109 -28.70969 -27.57682 -26.04174 -25.27265 -23.71176 -22.67344 -22.10609 -20.72322 -19.09884 -18.31802 -17.55155 -16.88642 -16.59749 -16.28832 -15.99991 -15.76914 -15.60084 -15.11173 -14.85586 -14.53900 -14.38998 -14.28547 -14.04804 -13.83025 -13.49527 -13.06524 -12.74261 -12.64494 -12.51718 -12.26636 -12.10624 -12.00044 -11.94054 -11.74740 -11.70344 -11.42958 -11.12211 -11.08137 -10.92121 -10.73916 -10.35327 -10.03875 -9.91984 -9.51082 -9.44431 -8.97068 -8.94842 -8.88175 -8.48868 -7.64150 -5.99771 -3.97110 0.03347 1.21562 1.62618 1.91753 2.75483 3.36316 3.37555 3.43042 3.48070 3.71419 3.98583 4.17239 4.37378 4.49638 4.77375 4.81806 4.99964 5.06555 5.07245 5.14133 5.20266 5.25326 5.30985 5.34688 5.40323 5.45457 5.48371 5.50281 5.58637 5.63519 5.69356 5.74611 5.81013 5.93850 5.96769 6.01822 6.07033 6.24037 6.96819 7.10614 7.33959 7.39403 7.43281 7.73547 8.33535 8.56350 8.98895 9.05253 9.61723 11.13763 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.002733 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.527649 B =10242.832389 C =11611.666988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.584 5.584 6 C 0.219 3.781 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.505 3.495 16 O -0.543 6.543 17 C -0.130 4.130 18 C -0.154 4.154 19 C 0.425 3.575 20 O -0.455 6.455 21 C -0.309 4.309 22 C -0.042 4.042 23 C -0.168 4.168 24 C -0.195 4.195 25 C -0.088 4.088 26 S 0.244 5.756 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 21.347 -9.119 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.314 5.314 6 C 0.098 3.902 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.292 3.708 16 O -0.421 6.421 17 C -0.170 4.170 18 C -0.192 4.192 19 C 0.304 3.696 20 O -0.334 6.334 21 C -0.427 4.427 22 C -0.076 4.076 23 C -0.198 4.198 24 C -0.315 4.315 25 C -0.146 4.146 26 S 0.512 5.488 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.169 0.831 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.699 19.524 -9.711 23.477 hybrid contribution -0.987 1.014 0.379 1.465 sum -9.686 20.538 -9.332 24.550 Atomic orbital electron populations 1.22701 0.81990 1.02493 0.99329 1.88058 1.18805 1.27337 1.95205 1.23142 0.95293 0.85194 0.99846 1.21566 0.91088 0.99489 0.89251 1.47828 1.64467 1.08909 1.10231 1.19685 0.97640 0.75024 0.97830 1.21375 0.96161 0.93517 1.45327 0.90916 1.24829 0.95148 0.98350 0.94700 1.69906 1.18216 1.17169 1.48742 0.86868 0.82569 0.81320 0.79155 1.20098 1.21255 1.18629 1.20318 0.78014 0.88442 0.84004 1.90660 1.46838 1.75142 1.29450 1.21491 1.03951 0.93377 0.98147 1.21822 1.05701 0.91801 0.99865 1.20189 0.73158 0.90998 0.85282 1.90571 1.35715 1.76856 1.30216 1.24162 1.18604 0.98658 1.01319 1.20955 0.95551 0.92878 0.98189 1.19934 1.05844 1.01197 0.92842 1.24564 1.05865 0.99244 1.01868 1.20424 1.02130 1.02654 0.89398 1.83404 1.59288 1.04098 1.01969 0.94479 0.94539 0.89901 0.92738 0.93566 0.88735 0.89475 0.93948 0.94998 0.92720 0.88615 0.89128 0.87688 0.87362 0.83104 0.84002 0.91042 0.90154 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.21 9.53 -35.23 -0.34 -6.55 16 3 C 0.04 0.61 6.28 37.15 0.23 0.84 16 4 C 0.11 1.81 5.62 -4.05 -0.02 1.78 16 5 N -0.58 -12.29 2.42 -175.06 -0.42 -12.71 16 6 C 0.22 5.56 4.05 -5.19 -0.02 5.54 16 7 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 8 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 11 Si 0.87 22.32 27.47 -169.99 -4.67 17.65 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 15 C 0.51 10.27 7.67 -10.99 -0.08 10.18 16 16 O -0.54 -13.08 15.56 5.55 0.09 -13.00 16 17 C -0.13 -1.95 3.54 -27.88 -0.10 -2.05 16 18 C -0.15 -2.11 4.28 -27.88 -0.12 -2.23 16 19 C 0.42 5.52 6.93 -33.17 -0.23 5.29 16 20 O -0.46 -6.79 16.36 5.41 0.09 -6.70 16 21 C -0.31 -3.49 6.23 -38.83 -0.24 -3.74 16 22 C -0.04 -0.42 9.95 -40.34 -0.40 -0.82 16 23 C -0.17 -1.39 9.99 -41.44 -0.41 -1.80 16 24 C -0.20 -1.57 6.28 -35.79 -0.22 -1.79 16 25 C -0.09 -0.46 10.33 36.01 0.37 -0.09 16 26 S 0.24 2.30 22.35 -107.50 -2.40 -0.11 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.61 7.30 -51.93 -0.38 0.24 16 32 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 33 H 0.09 1.17 6.44 -51.93 -0.33 0.84 16 34 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 35 H 0.03 0.87 6.85 -51.93 -0.36 0.51 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.10 1.37 7.36 -51.93 -0.38 0.99 16 38 H 0.09 1.21 7.22 -51.93 -0.37 0.84 16 39 H 0.11 1.39 8.10 -51.93 -0.42 0.97 16 40 H 0.11 1.52 8.10 -51.93 -0.42 1.10 16 41 H 0.15 1.39 8.02 -52.49 -0.42 0.96 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -36.77 390.98 -8.37 -45.14 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.80 Total: -0.85 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.58 Total: -1.15 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.35 Total: -40.32 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.16 Total: -26.25 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.40 Total: -0.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.77 -8.37 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.752 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds