Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00426 * 2 1 4 4 C 1.52995 * 109.47096 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47201 * 65.00639 * 4 3 2 6 6 C 1.46507 * 119.99776 * 269.99508 * 5 4 3 7 7 C 1.50703 * 109.46995 * 270.00234 * 6 5 4 8 8 H 1.07993 * 120.00251 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99638 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99685 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00216 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47184 * 90.00460 * 11 9 7 13 13 H 1.48503 * 109.47478 * 210.00258 * 11 9 7 14 14 H 1.48495 * 109.47246 * 330.00627 * 11 9 7 15 15 C 1.34771 * 120.00245 * 89.99655 * 5 4 3 16 16 O 1.21285 * 119.99935 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00290 * 359.97438 * 15 5 4 18 18 C 1.53001 * 109.47491 * 179.97438 * 17 15 5 19 19 C 1.50702 * 109.47143 * 179.97438 * 18 17 15 20 20 O 1.21446 * 119.99769 * 359.97438 * 19 18 17 21 21 C 1.41231 * 119.99993 * 179.97438 * 19 18 17 22 22 C 1.37185 * 125.48165 * 179.97438 * 21 19 18 23 23 C 1.37194 * 113.24220 * 179.97438 * 22 21 19 24 24 C 1.34027 * 115.15055 * 0.02562 * 23 22 21 25 25 C 1.50703 * 124.50003 * 179.97438 * 24 23 22 26 26 S 1.70611 * 110.99731 * 359.97438 * 24 23 22 27 27 H 1.08995 * 109.46738 * 299.99900 * 1 2 3 28 28 H 1.08995 * 109.47035 * 59.99426 * 1 2 3 29 29 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46434 * 60.00061 * 3 2 1 31 31 H 1.08995 * 109.46871 * 300.00598 * 3 2 1 32 32 H 1.08998 * 109.47618 * 304.99726 * 4 3 2 33 33 H 1.09002 * 109.46891 * 185.00442 * 4 3 2 34 34 H 1.08999 * 109.46701 * 29.99747 * 6 5 4 35 35 H 1.08999 * 109.47076 * 150.00282 * 6 5 4 36 36 H 0.97008 * 119.99868 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.47229 * 59.99688 * 17 15 5 38 38 H 1.09002 * 109.46814 * 300.00013 * 17 15 5 39 39 H 1.09000 * 109.46829 * 59.99970 * 18 17 15 40 40 H 1.09002 * 109.47110 * 299.99842 * 18 17 15 41 41 H 1.07999 * 123.37624 * 0.02562 * 22 21 19 42 42 H 1.07997 * 122.42770 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46620 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47001 * 300.02019 * 25 24 23 45 45 H 1.09001 * 109.47163 * 60.02718 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5010 -1.2979 -0.9450 8 1 6.2198 -0.5461 -0.6546 9 6 5.8605 -2.6289 -0.9529 10 7 7.0784 -2.9830 -0.6052 11 14 4.6174 -3.9293 -1.4560 12 1 4.7020 -4.1543 -2.9215 13 1 4.9120 -5.1980 -0.7427 14 1 3.2501 -3.4694 -1.1040 15 6 4.2615 1.3338 -2.3218 16 8 4.6255 0.8203 -3.3585 17 6 4.1278 2.8320 -2.2293 18 6 4.5103 3.4619 -3.5701 19 6 4.3759 4.9601 -3.4778 20 8 4.0093 5.4741 -2.4403 21 6 4.6764 5.7664 -4.5977 22 6 4.5931 7.1351 -4.6388 23 6 4.9447 7.6626 -5.8555 24 6 5.3038 6.7646 -6.7834 25 6 5.7273 7.1108 -8.1876 26 16 5.2177 5.1773 -6.1636 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0890 34 1 3.3852 -1.3629 -0.6735 35 1 3.9120 -1.2114 -2.3670 36 1 7.3313 -3.9195 -0.6104 37 1 4.7897 3.2084 -1.4494 38 1 3.0969 3.0904 -1.9869 39 1 3.8486 3.0855 -4.3503 40 1 5.5412 3.2035 -3.8120 41 1 4.2828 7.7370 -3.7975 42 1 4.9329 8.7246 -6.0515 43 1 5.9646 6.1964 -8.7313 44 1 4.9158 7.6340 -8.6933 45 1 6.6079 7.7523 -8.1538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -111.845830 kcal Electronic energy + Delta-G solvation = -26743.618333 eV Core-core repulsion = 22852.318669 eV Total energy + Delta-G solvation = -3891.299665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22458 -40.46700 -38.78556 -38.58074 -36.59460 -34.82659 -33.99785 -33.07274 -31.39997 -29.86877 -28.94620 -27.09027 -26.47344 -24.57525 -24.07411 -23.65583 -21.78141 -20.05924 -19.67625 -19.10615 -18.63959 -17.72809 -17.45455 -17.12720 -16.92440 -16.86286 -16.52671 -16.10928 -15.81110 -15.61776 -15.38695 -15.04562 -14.82177 -14.68306 -14.29855 -14.03336 -13.97744 -13.78573 -13.49717 -13.27731 -13.09365 -12.95298 -12.89934 -12.85092 -12.67292 -12.64342 -12.45604 -12.25522 -11.99601 -11.92174 -11.79025 -11.72144 -10.95454 -10.80870 -10.68723 -10.54018 -9.66741 -9.60128 -9.39692 -8.32470 -6.35935 -0.74899 0.49252 0.91913 1.13419 1.33066 1.35503 1.46918 1.77231 1.91368 2.24299 2.32833 2.93922 3.02764 3.07447 3.62098 3.82292 3.85039 3.99734 4.16515 4.22443 4.24409 4.29430 4.41391 4.44527 4.51947 4.54967 4.59340 4.62071 4.66428 4.72905 4.78506 4.86281 4.88178 4.95073 5.00108 5.01909 5.06114 5.08258 5.20131 5.39987 5.48908 5.64321 6.25802 6.31315 6.40574 6.64595 6.72744 7.23418 7.40645 8.84523 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.002733 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.527649 B =10242.832389 C =11611.666988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.047 3.953 4 C 0.103 3.897 5 N -0.593 5.593 6 C 0.234 3.766 7 C -0.533 4.533 8 H 0.030 0.970 9 C 0.012 3.988 10 N -0.946 5.946 11 Si 0.944 3.056 12 H -0.274 1.274 13 H -0.274 1.274 14 H -0.244 1.244 15 C 0.498 3.502 16 O -0.589 6.589 17 C -0.115 4.115 18 C -0.152 4.152 19 C 0.435 3.565 20 O -0.481 6.481 21 C -0.344 4.344 22 C -0.034 4.034 23 C -0.176 4.176 24 C -0.179 4.179 25 C -0.091 4.091 26 S 0.231 5.769 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.012 0.988 36 H 0.268 0.732 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 23.270 -9.932 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.030 4.030 4 C -0.020 4.020 5 N -0.323 5.323 6 C 0.112 3.888 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.200 1.200 13 H -0.199 1.199 14 H -0.167 1.167 15 C 0.287 3.713 16 O -0.471 6.471 17 C -0.155 4.155 18 C -0.190 4.190 19 C 0.316 3.684 20 O -0.361 6.361 21 C -0.462 4.462 22 C -0.069 4.069 23 C -0.205 4.205 24 C -0.300 4.300 25 C -0.149 4.149 26 S 0.500 5.500 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.174 0.826 42 H 0.186 0.814 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.714 21.483 -10.497 26.202 hybrid contribution -0.279 0.531 0.579 0.833 sum -10.993 22.014 -9.918 26.530 Atomic orbital electron populations 1.22874 0.79920 1.03253 1.00854 1.87987 1.21214 1.28813 1.95559 1.23139 0.92990 0.84876 1.01979 1.21884 0.93482 1.00185 0.86406 1.47906 1.64651 1.07420 1.12284 1.19224 0.95014 0.78247 0.96328 1.21600 0.97432 0.92953 1.45134 0.95150 1.25782 0.97280 1.00918 0.94558 1.70048 1.20431 1.18055 1.50079 0.85761 0.80508 0.78341 0.78680 1.19958 1.19891 1.16733 1.21215 0.76579 0.90484 0.82991 1.90626 1.48802 1.76432 1.31218 1.21436 1.05709 0.88998 0.99352 1.21788 1.05268 0.92759 0.99181 1.20031 0.72425 0.90372 0.85534 1.90553 1.37515 1.76961 1.31110 1.24026 1.21296 0.99206 1.01626 1.21204 0.94201 0.92405 0.99052 1.20186 1.05700 1.02578 0.92056 1.24990 1.03843 0.98098 1.03036 1.20593 1.03283 1.03399 0.87612 1.83471 1.59552 1.05579 1.01447 0.92203 0.93670 0.89679 0.89165 0.92595 0.90418 0.86477 0.93373 0.96943 0.92323 0.87562 0.86677 0.87434 0.88268 0.82618 0.81381 0.90599 0.88449 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.84 16 2 O -0.42 -13.07 9.53 -148.98 -1.42 -14.48 16 3 C 0.05 1.22 6.28 71.98 0.45 1.67 16 4 C 0.10 3.28 5.62 86.38 0.49 3.77 16 5 N -0.59 -25.21 2.42 -826.16 -2.00 -27.21 16 6 C 0.23 12.14 4.05 85.63 0.35 12.48 16 7 C -0.53 -32.55 9.94 25.60 0.25 -32.30 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C 0.01 0.76 5.47 84.65 0.46 1.22 16 10 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 11 Si 0.94 46.67 27.47 68.60 1.88 48.55 16 12 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.24 -11.26 6.54 99.48 0.65 -10.61 16 15 C 0.50 20.52 7.67 87.66 0.67 21.20 16 16 O -0.59 -29.39 15.56 -3.05 -0.05 -29.44 16 17 C -0.12 -3.40 3.54 29.85 0.11 -3.30 16 18 C -0.15 -4.18 4.28 29.85 0.13 -4.05 16 19 C 0.43 11.14 6.93 26.42 0.18 11.32 16 20 O -0.48 -13.95 16.36 -3.54 -0.06 -14.00 16 21 C -0.34 -7.55 6.23 22.76 0.14 -7.40 16 22 C -0.03 -0.64 9.95 21.78 0.22 -0.42 16 23 C -0.18 -2.47 9.99 21.06 0.21 -2.26 16 24 C -0.18 -2.48 6.28 24.73 0.16 -2.32 16 25 C -0.09 -0.68 10.33 71.24 0.74 0.05 16 26 S 0.23 4.19 22.35 -56.49 -1.26 2.93 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.33 7.30 -2.39 -0.02 1.31 16 32 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 33 H 0.12 2.95 6.44 -2.39 -0.02 2.94 16 34 H 0.05 2.44 6.17 -2.39 -0.01 2.42 16 35 H 0.01 0.69 6.85 -2.39 -0.02 0.68 16 36 H 0.27 16.12 8.31 -92.70 -0.77 15.35 16 37 H 0.11 2.94 7.36 -2.38 -0.02 2.92 16 38 H 0.12 2.85 7.22 -2.39 -0.02 2.84 16 39 H 0.11 2.88 8.10 -2.39 -0.02 2.86 16 40 H 0.10 2.90 8.10 -2.39 -0.02 2.88 16 41 H 0.16 2.64 8.02 -2.91 -0.02 2.62 16 42 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.08 0.53 8.11 -2.39 -0.02 0.51 16 44 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -83.07 390.98 4.13 -78.94 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.93 Total: 14.24 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.80 Total: 1.51 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.70 Total: -88.24 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -1.52 Total: -57.93 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.88 Total: 48.55 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.26 Total: 2.93 kcal Total: -83.07 4.13 -78.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.907 kcal (2) G-P(sol) polarization free energy of solvation -83.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds