Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38449 * 119.82574 * 2 1 4 4 C 1.37854 * 120.17053 * 180.02562 * 3 2 1 5 5 C 1.39906 * 119.82286 * 359.97438 * 4 3 2 6 6 C 1.47397 * 120.16926 * 179.97438 * 5 4 3 7 7 O 1.21358 * 120.00219 * 353.86694 * 6 5 4 8 8 C 1.49301 * 120.00157 * 173.86730 * 6 5 4 9 9 O 1.21369 * 119.99441 * 5.18179 * 8 6 5 10 10 N 1.34769 * 119.99890 * 185.18016 * 8 6 5 11 11 C 1.46503 * 119.99757 * 180.02562 * 10 8 6 12 12 C 1.50699 * 109.47399 * 180.02562 * 11 10 8 13 13 C 1.38327 * 119.95914 * 269.97507 * 12 11 10 14 14 C 1.38281 * 120.13267 * 180.02562 * 13 12 11 15 15 C 1.38124 * 120.07064 * 359.67940 * 14 13 12 16 16 C 1.38849 * 119.93036 * 0.59345 * 15 14 13 17 17 O 1.35756 * 120.06848 * 179.70166 * 16 15 14 18 18 C 1.34821 * 117.00172 * 353.99335 * 17 16 15 19 19 H 1.08009 * 119.99758 * 5.04686 * 18 17 16 20 20 C 1.38652 * 120.00174 * 185.05095 * 18 17 16 21 21 N 1.31560 * 119.99885 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00174 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46936 * 59.99522 * 22 20 18 24 24 H 1.48492 * 109.47260 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47276 * 300.00027 * 22 20 18 26 26 C 1.38080 * 119.97163 * 89.99556 * 12 11 10 27 27 C 1.39907 * 119.65821 * 0.25385 * 5 4 3 28 28 C 1.37855 * 119.82025 * 359.47319 * 27 5 4 29 29 H 1.08999 * 109.46888 * 89.99936 * 1 2 3 30 30 H 1.08996 * 109.47048 * 209.99850 * 1 2 3 31 31 H 1.09000 * 109.46722 * 330.00401 * 1 2 3 32 32 H 1.07992 * 119.91305 * 359.97392 * 3 2 1 33 33 H 1.08001 * 120.08604 * 179.97438 * 4 3 2 34 34 H 0.96995 * 120.00571 * 359.97438 * 10 8 6 35 35 H 1.08999 * 109.47164 * 59.99158 * 11 10 8 36 36 H 1.09011 * 109.46701 * 299.99853 * 11 10 8 37 37 H 1.07993 * 119.93143 * 0.02562 * 13 12 11 38 38 H 1.08002 * 119.95852 * 179.97438 * 14 13 12 39 39 H 1.08004 * 120.03378 * 180.31707 * 15 14 13 40 40 H 0.96995 * 119.99535 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.02984 * 359.97438 * 26 12 11 42 42 H 1.08007 * 120.09122 * 179.74340 * 27 5 4 43 43 H 1.08001 * 119.90945 * 180.27164 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2011 0.0000 4 6 3.5742 1.2094 -0.0005 5 6 4.2772 -0.0002 -0.0005 6 6 5.7512 -0.0002 -0.0017 7 8 6.3580 1.0447 -0.1149 8 6 6.4978 -1.2857 0.1365 9 8 5.8946 -2.3387 0.1551 10 7 7.8415 -1.2768 0.2404 11 6 8.5741 -2.5383 0.3754 12 6 10.0507 -2.2537 0.4733 13 6 10.8209 -2.1972 -0.6743 14 6 12.1763 -1.9368 -0.5885 15 6 12.7639 -1.7257 0.6435 16 6 11.9945 -1.7874 1.7977 17 8 12.5704 -1.5864 3.0106 18 6 13.9119 -1.4552 3.0370 19 1 14.4704 -1.4299 2.1129 20 6 14.5747 -1.3528 4.2506 21 7 13.8944 -1.3832 5.3762 22 14 16.4335 -1.1717 4.2873 23 1 16.8251 0.0621 3.5593 24 1 16.8944 -1.0820 5.6960 25 1 17.0587 -2.3505 3.6354 26 6 10.6335 -2.0500 1.7084 27 6 3.5740 -1.2097 -0.0054 28 6 2.1955 -1.2012 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6514 2.1339 -0.0004 33 1 4.1099 2.1471 -0.0010 34 1 8.3236 -0.4353 0.2252 35 1 8.3814 -3.1653 -0.4951 36 1 8.2436 -3.0557 1.2762 37 1 10.3628 -2.3567 -1.6391 38 1 12.7751 -1.8937 -1.4863 39 1 13.8216 -1.5174 0.7094 40 1 14.3581 -1.3111 6.2251 41 1 10.0316 -2.0942 2.6040 42 1 4.1097 -2.1475 -0.0096 43 1 1.6513 -2.1340 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113105899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -41.664103 kcal Electronic energy + Delta-G solvation = -26789.435802 eV Core-core repulsion = 22765.735494 eV Total energy + Delta-G solvation = -4023.700308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93635 -39.43081 -39.00408 -38.41567 -36.89177 -34.82474 -33.13855 -32.36081 -31.29111 -30.95119 -29.23021 -28.39406 -26.60057 -25.37099 -24.30558 -22.92137 -21.87110 -21.69316 -20.89535 -20.24662 -18.31836 -17.54744 -17.25560 -16.96273 -16.09776 -15.94783 -15.48075 -15.33331 -15.16266 -14.80373 -14.49311 -14.29245 -14.24132 -14.15867 -13.90620 -13.74388 -13.63003 -13.46269 -12.76148 -12.62390 -12.49009 -12.27240 -12.22374 -11.98851 -11.85061 -11.70971 -11.40310 -11.10348 -10.95077 -10.87689 -10.75501 -10.51462 -9.53949 -9.44494 -9.28088 -9.24244 -9.05868 -8.90897 -8.29514 -7.36847 -6.51046 -4.10741 0.10284 1.12620 1.42313 1.79271 2.22539 2.75965 2.86666 3.09644 3.10704 3.13659 3.54100 3.90955 4.05112 4.37812 4.48730 4.51890 4.63373 4.72586 4.84377 4.92123 5.03430 5.10717 5.17405 5.18447 5.33874 5.41748 5.46866 5.64573 5.65826 5.72051 5.78331 5.82231 5.97494 6.02956 6.03963 6.16722 6.20761 6.32717 6.50118 6.63194 6.72551 6.76963 6.95479 7.11947 7.22713 7.29764 7.33263 7.66551 7.84842 7.92670 8.93998 9.61864 10.66486 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.001845 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.311311 B =15169.208277 C =15678.251766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.051 4.051 5 C -0.175 4.175 6 C 0.393 3.607 7 O -0.421 6.421 8 C 0.484 3.516 9 O -0.516 6.516 10 N -0.689 5.689 11 C 0.164 3.836 12 C -0.078 4.078 13 C -0.194 4.194 14 C -0.076 4.076 15 C -0.223 4.223 16 C 0.150 3.850 17 O -0.175 6.175 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.169 4.169 27 C -0.060 4.060 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.414 0.586 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.119 0.881 42 H 0.172 0.828 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.166 1.970 -11.857 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.050 4.050 3 C -0.162 4.162 4 C -0.069 4.069 5 C -0.177 4.177 6 C 0.266 3.734 7 O -0.293 6.293 8 C 0.267 3.733 9 O -0.394 6.394 10 N -0.341 5.341 11 C 0.042 3.958 12 C -0.078 4.078 13 C -0.213 4.213 14 C -0.094 4.094 15 C -0.243 4.243 16 C 0.096 3.904 17 O -0.078 6.078 18 C -0.470 4.470 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.189 4.189 27 C -0.077 4.077 28 C -0.161 4.161 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.250 0.750 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.189 0.811 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.282 1.812 -11.392 24.207 hybrid contribution 1.313 0.510 0.006 1.408 sum -19.969 2.322 -11.386 23.104 Atomic orbital electron populations 1.20904 0.90896 1.03229 1.02723 1.20341 0.96406 0.93365 0.94840 1.20973 0.93756 0.97862 1.03576 1.21398 0.94191 0.97478 0.93841 1.20043 0.92559 0.94993 1.10062 1.22561 0.89658 0.88323 0.72876 1.90595 1.71110 1.34214 1.33396 1.20691 0.83359 0.90566 0.78696 1.90522 1.67058 1.32477 1.49316 1.46173 1.05897 1.11760 1.70293 1.20335 0.87831 0.84742 1.02903 1.19203 0.93189 1.02221 0.93237 1.20479 0.94189 1.09968 0.96703 1.20751 0.94416 0.97608 0.96604 1.21256 1.01139 1.09708 0.92197 1.19311 0.92177 0.92520 0.86402 1.83980 1.23171 1.77038 1.23626 1.21281 0.78874 1.52420 0.94457 0.89057 1.25303 1.00559 0.96477 0.94105 1.70027 1.36409 1.45413 0.97613 0.85770 0.80442 0.79224 0.77944 1.19464 1.20228 1.19447 1.20084 0.93033 1.08808 0.96983 1.22667 0.94399 0.99738 0.90932 1.21170 0.94317 0.97706 1.02929 0.90632 0.91084 0.91194 0.85358 0.84804 0.74960 0.90174 0.90073 0.87422 0.87181 0.85390 0.91862 0.86314 0.81096 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 36.01 0.36 -0.25 16 2 C -0.05 -0.39 5.89 -104.46 -0.62 -1.00 16 3 C -0.14 -1.18 9.68 -39.64 -0.38 -1.56 16 4 C -0.05 -0.51 9.60 -39.10 -0.38 -0.88 16 5 C -0.17 -2.00 5.88 -104.92 -0.62 -2.62 16 6 C 0.39 4.96 7.17 -31.25 -0.22 4.74 16 7 O -0.42 -5.86 16.50 5.49 0.09 -5.77 16 8 C 0.48 6.43 7.84 -11.66 -0.09 6.34 16 9 O -0.52 -7.37 13.42 5.48 0.07 -7.30 16 10 N -0.69 -9.17 5.54 -61.96 -0.34 -9.52 16 11 C 0.16 2.27 5.80 -5.19 -0.03 2.24 16 12 C -0.08 -1.29 5.25 -104.65 -0.55 -1.83 16 13 C -0.19 -3.11 9.70 -39.53 -0.38 -3.50 16 14 C -0.08 -1.31 10.04 -39.61 -0.40 -1.70 16 15 C -0.22 -4.63 9.17 -39.40 -0.36 -4.99 16 16 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 17 O -0.17 -4.86 9.76 0.05 0.00 -4.86 16 18 C -0.39 -10.76 9.49 30.89 0.29 -10.46 16 19 H 0.09 2.29 5.21 -52.48 -0.27 2.01 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 22 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.17 -3.38 9.65 -39.40 -0.38 -3.76 16 27 C -0.06 -0.64 9.30 -39.10 -0.36 -1.00 16 28 C -0.14 -1.25 9.68 -39.64 -0.38 -1.63 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 1.24 7.67 -52.49 -0.40 0.83 16 34 H 0.41 5.46 7.94 -40.82 -0.32 5.13 16 35 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.08 1.13 8.08 -51.92 -0.42 0.71 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.66 5.65 -52.48 -0.30 2.36 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.17 1.95 4.85 -52.51 -0.25 1.70 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -30.88 376.42 -8.53 -39.41 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.90 Total: 9.01 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -4.86 Total: -17.68 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.42 Total: -33.59 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.16 Total: -17.92 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.88 -8.53 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.253 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds