Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47233 * 2 1 4 4 C 1.53008 * 109.46566 * 119.99622 * 2 1 3 5 5 N 1.46496 * 109.46986 * 65.00177 * 4 2 1 6 6 C 1.34774 * 119.99860 * 179.97438 * 5 4 2 7 7 O 1.21558 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.47841 * 120.00158 * 179.97438 * 6 5 4 9 9 C 1.39575 * 120.14653 * 180.02562 * 8 6 5 10 10 C 1.37960 * 119.85869 * 180.02562 * 9 8 6 11 11 C 1.38364 * 120.14068 * 0.02562 * 10 9 8 12 12 S 1.76193 * 119.85355 * 179.97438 * 11 10 9 13 13 O 1.42105 * 104.27847 * 206.07375 * 12 11 10 14 14 O 1.42101 * 104.27778 * 333.93045 * 12 11 10 15 15 C 1.81397 * 104.44909 * 90.00208 * 12 11 10 16 16 C 1.53009 * 109.47235 * 179.97438 * 15 12 11 17 17 C 1.50697 * 109.46948 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00322 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99943 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99809 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46833 * 90.00160 * 21 19 17 23 23 H 1.48496 * 109.47064 * 210.00215 * 21 19 17 24 24 H 1.48500 * 109.47150 * 330.00047 * 21 19 17 25 25 C 1.38365 * 120.29353 * 0.23442 * 11 10 9 26 26 C 1.37963 * 120.14041 * 359.48881 * 25 11 10 27 27 H 1.08996 * 109.47257 * 300.00578 * 1 2 3 28 28 H 1.09005 * 109.46730 * 59.99872 * 1 2 3 29 29 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47257 * 239.99422 * 2 1 3 31 31 H 1.08992 * 109.46878 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46817 * 299.99550 * 3 2 1 33 33 H 1.08997 * 109.46961 * 59.99425 * 3 2 1 34 34 H 1.08993 * 109.47050 * 305.00033 * 4 2 1 35 35 H 1.08999 * 109.46592 * 184.99915 * 4 2 1 36 36 H 0.96996 * 119.99982 * 359.97438 * 5 4 2 37 37 H 1.08004 * 120.07456 * 0.02562 * 9 8 6 38 38 H 1.07994 * 119.93412 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.47032 * 299.99903 * 15 12 11 40 40 H 1.09000 * 109.47124 * 60.00175 * 15 12 11 41 41 H 1.08995 * 109.47216 * 300.00010 * 16 15 12 42 42 H 1.09000 * 109.46805 * 60.00123 * 16 15 12 43 43 H 0.97001 * 119.99986 * 179.97438 * 20 19 17 44 44 H 1.07989 * 119.92960 * 179.74255 * 25 11 10 45 45 H 1.08005 * 120.06989 * 180.25002 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6523 -2.1328 1.1907 6 6 1.9962 -2.9681 2.1909 7 8 2.6276 -2.5502 3.1419 8 6 1.6046 -4.3925 2.1321 9 6 1.9587 -5.2601 3.1664 10 6 1.5906 -6.5883 3.1052 11 6 0.8724 -7.0609 2.0210 12 16 0.4069 -8.7588 1.9502 13 8 0.2789 -9.0294 0.5611 14 8 1.3842 -9.4233 2.7391 15 6 -1.2142 -8.8178 2.7622 16 6 -1.7317 -10.2577 2.7637 17 6 -3.0781 -10.3068 3.4388 18 1 -3.5206 -9.4016 3.8275 19 6 -3.7455 -11.5073 3.5593 20 7 -3.2068 -12.6096 3.0855 21 14 -5.4148 -11.5682 4.3955 22 1 -6.4825 -11.3603 3.3847 23 1 -5.5964 -12.8925 5.0422 24 1 -5.4923 -10.5001 5.4243 25 6 0.5228 -6.2073 0.9897 26 6 0.8798 -4.8757 1.0415 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1262 -0.6443 1.2953 36 1 1.1482 -2.4661 0.4321 37 1 2.5196 -4.8926 4.0131 38 1 1.8635 -7.2606 3.9050 39 1 -1.1193 -8.4644 3.7890 40 1 -1.9146 -8.1810 2.2219 41 1 -1.8266 -10.6108 1.7369 42 1 -1.0314 -10.8949 3.3037 43 1 -3.6762 -13.4542 3.1706 44 1 -0.0341 -6.5834 0.1444 45 1 0.6029 -4.2095 0.2377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129816395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -101.966863 kcal Electronic energy + Delta-G solvation = -26129.259025 eV Core-core repulsion = 22238.387744 eV Total energy + Delta-G solvation = -3890.871281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.60063 -38.72362 -37.09164 -36.67640 -35.51091 -33.95079 -33.90931 -31.70343 -31.27299 -31.21590 -27.74007 -27.00336 -25.66919 -24.22845 -22.94298 -21.67103 -21.11914 -20.71413 -18.86160 -18.35352 -17.43676 -16.81280 -16.48066 -16.06037 -15.65566 -15.41093 -15.33194 -14.96218 -14.72272 -14.64641 -14.51150 -14.00711 -13.82124 -13.50558 -13.46834 -13.14020 -13.04768 -12.81326 -12.58579 -12.51638 -11.81560 -11.71380 -11.65945 -11.64153 -11.51226 -11.41980 -11.28708 -11.11361 -11.01263 -10.82892 -10.45156 -10.42774 -10.30424 -9.83097 -9.65423 -9.46112 -9.31521 -9.16712 -8.53549 -6.15892 -4.21793 0.12292 0.54220 1.04904 2.38044 2.68072 3.24371 3.25823 3.31041 3.33559 3.42500 4.13195 4.23827 4.27210 4.30014 4.32137 4.35990 4.45720 4.58482 4.66476 4.95651 5.03476 5.06825 5.12837 5.14182 5.19663 5.24361 5.30344 5.31949 5.39093 5.55195 5.59025 5.63123 5.68012 5.68697 5.73687 5.76605 5.89373 5.92667 5.99137 6.39144 6.50175 7.01445 7.25235 7.30537 7.76174 7.76940 8.12160 8.81548 9.43204 10.94934 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002164 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.653310 B =12934.947272 C =13680.483301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.145 4.145 4 C 0.122 3.878 5 N -0.725 5.725 6 C 0.557 3.443 7 O -0.531 6.531 8 C -0.094 4.094 9 C -0.082 4.082 10 C -0.030 4.030 11 C -0.631 4.631 12 S 2.471 3.529 13 O -0.943 6.943 14 O -0.942 6.942 15 C -0.562 4.562 16 C 0.026 3.974 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.032 4.032 26 C -0.111 4.111 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.401 0.599 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.266 0.734 44 H 0.150 0.850 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 24.970 -6.659 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 C -0.203 4.203 4 C -0.001 4.001 5 N -0.378 5.378 6 C 0.344 3.656 7 O -0.408 6.408 8 C -0.097 4.097 9 C -0.101 4.101 10 C -0.049 4.049 11 C -0.714 4.714 12 S 2.653 3.347 13 O -0.940 6.940 14 O -0.939 6.939 15 C -0.696 4.696 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.050 4.050 26 C -0.130 4.130 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.167 0.833 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.604 24.514 -6.384 27.091 hybrid contribution -1.478 0.573 0.301 1.613 sum 8.126 25.087 -6.083 27.063 Atomic orbital electron populations 1.21897 0.94463 1.02075 1.02430 1.21382 0.96661 0.97112 0.97701 1.21760 1.01316 0.94786 1.02440 1.21500 1.00328 0.79809 0.98473 1.45945 1.58059 1.09994 1.23827 1.18308 0.79283 0.85635 0.82352 1.90791 1.39453 1.77594 1.32940 1.20170 0.99796 0.93301 0.96461 1.21394 0.98034 0.92668 0.98037 1.21057 0.92281 0.95540 0.96022 1.31358 1.11001 1.27002 1.02082 1.06506 0.78867 0.73339 0.75959 1.93529 1.87504 1.82490 1.30510 1.93535 1.57792 1.71155 1.71441 1.30195 1.16195 1.10943 1.12244 1.19045 0.98123 0.84674 0.99460 1.20979 1.02265 0.94261 1.38576 0.91930 1.25065 0.98327 0.95573 0.95487 1.69952 1.38540 0.98921 1.45269 0.86456 0.83584 0.77571 0.79599 1.20462 1.20998 1.19749 1.20959 0.95080 0.92441 0.96532 1.21347 0.98218 0.96152 0.97332 0.92223 0.92129 0.92578 0.90385 0.92259 0.91985 0.92214 0.91091 0.91168 0.76238 0.83784 0.83123 0.85652 0.85706 0.94534 0.94510 0.92475 0.83254 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.07 37.16 0.34 -0.33 16 2 C -0.11 -0.49 2.96 -90.61 -0.27 -0.76 16 3 C -0.15 -0.57 9.19 37.16 0.34 -0.23 16 4 C 0.12 0.83 5.06 -4.04 -0.02 0.81 16 5 N -0.73 -5.59 5.23 -61.25 -0.32 -5.91 16 6 C 0.56 6.23 7.77 -12.33 -0.10 6.13 16 7 O -0.53 -7.67 16.35 5.32 0.09 -7.58 16 8 C -0.09 -1.05 5.87 -104.97 -0.62 -1.67 16 9 C -0.08 -0.98 9.60 -39.18 -0.38 -1.36 16 10 C -0.03 -0.39 9.45 -39.64 -0.37 -0.76 16 11 C -0.63 -8.57 5.66 -39.49 -0.22 -8.80 16 12 S 2.47 41.47 5.16 -107.50 -0.55 40.92 16 13 O -0.94 -18.03 17.10 -57.54 -0.98 -19.01 16 14 O -0.94 -18.31 17.11 -57.54 -0.98 -19.29 16 15 C -0.56 -9.97 5.92 37.16 0.22 -9.75 16 16 C 0.03 0.63 4.98 -27.88 -0.14 0.49 16 17 C -0.52 -13.90 9.11 -34.44 -0.31 -14.21 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 C -0.03 -0.37 9.45 -39.64 -0.37 -0.74 16 26 C -0.11 -1.08 9.54 -39.18 -0.37 -1.45 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.24 7.18 -51.93 -0.37 -0.13 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.40 2.14 5.69 -40.82 -0.23 1.90 16 37 H 0.14 1.60 7.65 -52.48 -0.40 1.20 16 38 H 0.15 1.75 7.56 -52.49 -0.40 1.35 16 39 H 0.13 1.97 8.14 -51.92 -0.42 1.54 16 40 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.15 1.53 7.55 -52.49 -0.40 1.14 16 45 H 0.13 0.77 6.41 -52.48 -0.34 0.44 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -35.67 389.98 -10.29 -45.96 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.75 Total: -0.51 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -2.38 Total: -31.13 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.42 Total: -30.94 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.88 Total: -45.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 41.47 SS G_CDS: -0.55 Total: 40.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.67 -10.29 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129816395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.009 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds