Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47192 * 2 1 4 4 C 1.37977 * 120.07426 * 265.75218 * 3 2 1 5 5 C 1.38336 * 120.14599 * 180.23014 * 4 3 2 6 6 C 1.38382 * 120.29035 * 359.49356 * 5 4 3 7 7 S 1.76201 * 119.92750 * 180.25380 * 6 5 4 8 8 C 1.81397 * 104.45013 * 270.25275 * 7 6 5 9 9 O 1.42094 * 104.27772 * 26.32418 * 7 6 5 10 10 O 1.42103 * 104.27470 * 154.18454 * 7 6 5 11 11 C 1.37943 * 120.14543 * 0.50900 * 6 5 4 12 12 C 1.39551 * 120.07371 * 85.73217 * 3 2 1 13 13 C 1.47854 * 120.14445 * 0.04352 * 12 3 2 14 14 O 1.21557 * 119.99723 * 55.38094 * 13 12 3 15 15 N 1.34774 * 120.00174 * 235.37954 * 13 12 3 16 16 C 1.46501 * 119.99759 * 5.49311 * 15 13 12 17 17 C 1.53000 * 109.47106 * 86.14415 * 16 15 13 18 18 C 1.46496 * 120.00054 * 185.49025 * 15 13 12 19 19 C 1.50707 * 109.46826 * 90.00174 * 18 15 13 20 20 H 1.08002 * 120.00005 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99921 * 180.02562 * 19 18 15 22 22 N 1.31514 * 119.99854 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00029 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46933 * 89.99782 * 23 21 19 25 25 H 1.48494 * 109.47174 * 210.00082 * 23 21 19 26 26 H 1.48499 * 109.46900 * 330.00413 * 23 21 19 27 27 H 1.08997 * 109.46701 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47123 * 300.00066 * 1 2 3 29 29 H 1.09002 * 109.46979 * 60.00119 * 1 2 3 30 30 H 1.09004 * 109.46865 * 239.99938 * 2 1 3 31 31 H 1.08996 * 109.46980 * 120.00355 * 2 1 3 32 32 H 1.08004 * 119.92818 * 359.95861 * 4 3 2 33 33 H 1.07997 * 119.85536 * 179.72224 * 5 4 3 34 34 H 1.09006 * 109.47222 * 59.99661 * 8 7 6 35 35 H 1.09004 * 109.47146 * 180.02562 * 8 7 6 36 36 H 1.09005 * 109.47253 * 300.00481 * 8 7 6 37 37 H 1.08000 * 120.07423 * 179.76743 * 11 6 5 38 38 H 1.09000 * 109.46932 * 206.14312 * 16 15 13 39 39 H 1.09002 * 109.47065 * 326.14212 * 16 15 13 40 40 H 1.09006 * 109.46522 * 299.99455 * 17 16 15 41 41 H 1.08998 * 109.47418 * 59.99198 * 17 16 15 42 42 H 1.08997 * 109.47092 * 180.02562 * 17 16 15 43 43 H 1.08996 * 109.47341 * 209.99750 * 18 15 13 44 44 H 1.08999 * 109.47539 * 330.00306 * 18 15 13 45 45 H 0.96991 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3463 2.0432 -1.1907 5 6 2.8120 3.3458 -1.1921 6 6 2.9564 4.0367 -0.0018 7 16 3.5442 5.6977 -0.0152 8 6 5.3469 5.5411 0.1117 9 8 3.1754 6.1896 -1.2963 10 8 3.0085 6.2685 1.1708 11 6 2.6463 3.4261 1.1956 12 6 2.1808 2.1101 1.2043 13 6 1.8468 1.4492 2.4841 14 8 2.3724 0.3933 2.7780 15 7 0.9599 2.0176 3.3247 16 6 0.2370 3.2257 2.9195 17 6 -1.0172 2.8312 2.1370 18 6 0.7186 1.4273 4.6436 19 6 1.6711 2.0285 5.6448 20 1 2.3845 2.7758 5.3303 21 6 1.6317 1.6244 6.9625 22 7 2.4633 2.1486 7.8362 23 14 0.3974 0.3322 7.5068 24 1 1.0009 -1.0177 7.3697 25 1 0.0276 0.5675 8.9256 26 1 -0.8176 0.4197 6.6575 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2322 1.5108 -2.1235 33 1 3.0606 3.8269 -2.1265 34 1 5.7227 4.9695 -0.7370 35 1 5.7988 6.5330 0.1110 36 1 5.6026 5.0263 1.0380 37 1 2.7630 3.9651 2.1242 38 1 -0.0506 3.7914 3.8057 39 1 0.8803 3.8398 2.2893 40 1 -0.7294 2.2655 1.2507 41 1 -1.6604 2.2169 2.7670 42 1 -1.5548 3.7300 1.8351 43 1 -0.3073 1.6307 4.9505 44 1 0.8761 0.3499 4.5938 45 1 2.4354 1.8646 8.7632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133324992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = -75.508089 kcal Electronic energy + Delta-G solvation = -28554.156151 eV Core-core repulsion = 24664.432208 eV Total energy + Delta-G solvation = -3889.723942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.42687 -38.23675 -37.23430 -36.08485 -35.58572 -34.29228 -32.81216 -31.40518 -30.38048 -30.05117 -29.56346 -27.69408 -24.70659 -23.95572 -23.01005 -22.20727 -21.29308 -19.72309 -18.55696 -17.45384 -16.98223 -16.65888 -16.35702 -16.19442 -15.68836 -15.61638 -15.41254 -14.39061 -14.16642 -13.96710 -13.74494 -13.67325 -13.57807 -13.42994 -13.38469 -13.17460 -12.85950 -12.48253 -12.31734 -12.22614 -12.18760 -12.14427 -11.94702 -11.73386 -11.59190 -11.35910 -11.22437 -11.13182 -10.85391 -10.71638 -10.67754 -10.52442 -10.18276 -9.57910 -9.27694 -9.22074 -8.97722 -8.61460 -7.79869 -6.11392 -4.10815 -0.11911 0.64769 0.99931 2.66533 2.97456 3.27118 3.33033 3.34654 3.42775 3.67851 3.78437 3.96928 4.37006 4.50231 4.54467 4.57626 4.69882 4.72611 4.94890 5.08092 5.21918 5.27113 5.27648 5.34727 5.39574 5.41378 5.54089 5.60122 5.64002 5.71025 5.79899 5.83151 5.94990 6.01146 6.05453 6.14592 6.20741 6.38195 6.45732 6.60239 6.68214 6.89751 7.25516 7.56449 8.12178 8.42113 8.77835 8.92160 9.48265 11.01804 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.004207 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.886643 B = 6653.284733 C = 7945.112034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.015 3.985 4 C -0.144 4.144 5 C -0.012 4.012 6 C -0.671 4.671 7 S 2.500 3.500 8 C -0.651 4.651 9 O -0.941 6.941 10 O -0.931 6.931 11 C 0.008 3.992 12 C -0.129 4.129 13 C 0.556 3.444 14 O -0.531 6.531 15 N -0.581 5.581 16 C 0.095 3.905 17 C -0.173 4.173 18 C 0.215 3.785 19 C -0.532 4.532 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.876 3.124 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.266 1.266 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.039 0.961 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 3.391 -20.720 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.014 3.986 4 C -0.163 4.163 5 C -0.031 4.031 6 C -0.758 4.758 7 S 2.680 3.320 8 C -0.801 4.801 9 O -0.938 6.938 10 O -0.928 6.928 11 C -0.011 4.011 12 C -0.133 4.133 13 C 0.342 3.658 14 O -0.409 6.409 15 N -0.311 5.311 16 C -0.029 4.029 17 C -0.231 4.231 18 C 0.095 3.905 19 C -0.571 4.571 20 H 0.094 0.906 21 C -0.128 4.128 22 N -0.533 5.533 23 Si 0.702 3.298 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.039 3.563 -20.372 20.681 hybrid contribution -0.103 -1.347 0.536 1.453 sum -0.142 2.216 -19.836 19.960 Atomic orbital electron populations 1.21805 0.94116 1.02332 1.02307 1.20933 0.96757 0.92074 1.05040 1.20251 0.90907 0.95776 0.91670 1.21084 1.02258 0.95307 0.97667 1.20965 0.92177 0.93589 0.96378 1.30417 1.20721 1.25447 0.99210 1.05154 0.77852 0.74257 0.74750 1.30233 1.25371 1.12012 1.12474 1.93569 1.81328 1.77847 1.41056 1.93628 1.76007 1.75083 1.48092 1.21097 0.90192 0.92622 0.97178 1.20164 1.03894 0.94695 0.94535 1.17998 0.80069 0.84885 0.82879 1.90733 1.52343 1.22144 1.75709 1.47917 1.39330 1.27097 1.16786 1.21702 0.93241 0.87595 1.00366 1.22309 0.98444 1.01874 1.00477 1.19726 0.96943 0.95096 0.78733 1.21319 1.18977 1.24423 0.92331 0.90615 1.24837 0.95557 0.96043 0.96399 1.69889 1.36995 1.43094 1.03365 0.86861 0.82121 0.82637 0.78145 1.19906 1.21021 1.19045 0.91893 0.91865 0.92663 0.90515 0.87925 0.84719 0.84004 0.85039 0.85019 0.84624 0.83177 0.89165 0.90760 0.92643 0.92178 0.91751 0.94969 0.94327 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.84 37.16 0.37 -1.35 16 2 C -0.11 -1.40 5.60 -27.88 -0.16 -1.56 16 3 C 0.01 0.20 5.17 -104.23 -0.54 -0.34 16 4 C -0.14 -1.53 9.67 -39.64 -0.38 -1.92 16 5 C -0.01 -0.12 9.47 -39.49 -0.37 -0.50 16 6 C -0.67 -7.82 5.65 -39.64 -0.22 -8.04 16 7 S 2.50 25.21 5.80 -107.50 -0.62 24.59 16 8 C -0.65 -4.07 10.79 101.05 1.09 -2.98 16 9 O -0.94 -11.31 17.12 -57.54 -0.99 -12.30 16 10 O -0.93 -12.99 17.12 -57.54 -0.98 -13.97 16 11 C 0.01 0.12 7.01 -39.18 -0.27 -0.15 16 12 C -0.13 -2.08 4.95 -104.97 -0.52 -2.60 16 13 C 0.56 11.27 6.41 -12.33 -0.08 11.20 16 14 O -0.53 -12.59 14.74 5.32 0.08 -12.51 16 15 N -0.58 -11.94 2.46 -176.17 -0.43 -12.38 16 16 C 0.09 1.59 5.91 -4.04 -0.02 1.57 16 17 C -0.17 -2.38 10.21 37.16 0.38 -2.00 16 18 C 0.22 5.18 4.25 -5.19 -0.02 5.16 16 19 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 21 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 23 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.84 5.92 -51.93 -0.31 0.54 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.76 8.06 -51.93 -0.42 0.35 16 31 H 0.10 1.62 5.91 -51.93 -0.31 1.31 16 32 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.14 1.08 7.57 -52.49 -0.40 0.68 16 34 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.14 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.15 2.27 6.93 -52.49 -0.36 1.91 16 38 H 0.09 1.55 8.04 -51.93 -0.42 1.13 16 39 H 0.07 1.17 4.53 -51.93 -0.24 0.93 16 40 H 0.05 0.74 5.95 -51.93 -0.31 0.43 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 44 H 0.04 0.98 6.78 -51.93 -0.35 0.63 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -37.44 378.00 -8.80 -46.24 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.45 Total: 1.41 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.20 Total: -16.88 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.34 Total: -38.92 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.89 Total: -38.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 25.21 SS G_CDS: -0.62 Total: 24.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.44 -8.80 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133324992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.273 kcal (2) G-P(sol) polarization free energy of solvation -37.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds