Wall clock time and date at job start Sat Apr 11 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47192 * 2 1 4 4 C 1.37977 * 120.07426 * 265.75218 * 3 2 1 5 5 C 1.38336 * 120.14599 * 180.23014 * 4 3 2 6 6 C 1.38382 * 120.29035 * 359.49356 * 5 4 3 7 7 S 1.76201 * 119.92750 * 180.25380 * 6 5 4 8 8 C 1.81397 * 104.45013 * 270.25275 * 7 6 5 9 9 O 1.42094 * 104.27772 * 26.32418 * 7 6 5 10 10 O 1.42103 * 104.27470 * 154.18454 * 7 6 5 11 11 C 1.37943 * 120.14543 * 0.50900 * 6 5 4 12 12 C 1.39551 * 120.07371 * 85.73217 * 3 2 1 13 13 C 1.47854 * 120.14445 * 0.04352 * 12 3 2 14 14 O 1.21557 * 119.99723 * 55.38094 * 13 12 3 15 15 N 1.34774 * 120.00174 * 235.37954 * 13 12 3 16 16 C 1.46501 * 119.99759 * 5.49311 * 15 13 12 17 17 C 1.53000 * 109.47106 * 86.14415 * 16 15 13 18 18 C 1.46496 * 120.00054 * 185.49025 * 15 13 12 19 19 C 1.50707 * 109.46826 * 90.00174 * 18 15 13 20 20 H 1.08002 * 120.00005 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99921 * 180.02562 * 19 18 15 22 22 N 1.31514 * 119.99854 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00029 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46933 * 89.99782 * 23 21 19 25 25 H 1.48494 * 109.47174 * 210.00082 * 23 21 19 26 26 H 1.48499 * 109.46900 * 330.00413 * 23 21 19 27 27 H 1.08997 * 109.46701 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47123 * 300.00066 * 1 2 3 29 29 H 1.09002 * 109.46979 * 60.00119 * 1 2 3 30 30 H 1.09004 * 109.46865 * 239.99938 * 2 1 3 31 31 H 1.08996 * 109.46980 * 120.00355 * 2 1 3 32 32 H 1.08004 * 119.92818 * 359.95861 * 4 3 2 33 33 H 1.07997 * 119.85536 * 179.72224 * 5 4 3 34 34 H 1.09006 * 109.47222 * 59.99661 * 8 7 6 35 35 H 1.09004 * 109.47146 * 180.02562 * 8 7 6 36 36 H 1.09005 * 109.47253 * 300.00481 * 8 7 6 37 37 H 1.08000 * 120.07423 * 179.76743 * 11 6 5 38 38 H 1.09000 * 109.46932 * 206.14312 * 16 15 13 39 39 H 1.09002 * 109.47065 * 326.14212 * 16 15 13 40 40 H 1.09006 * 109.46522 * 299.99455 * 17 16 15 41 41 H 1.08998 * 109.47418 * 59.99198 * 17 16 15 42 42 H 1.08997 * 109.47092 * 180.02562 * 17 16 15 43 43 H 1.08996 * 109.47341 * 209.99750 * 18 15 13 44 44 H 1.08999 * 109.47539 * 330.00306 * 18 15 13 45 45 H 0.96991 * 119.99774 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3463 2.0432 -1.1907 5 6 2.8120 3.3458 -1.1921 6 6 2.9564 4.0367 -0.0018 7 16 3.5442 5.6977 -0.0152 8 6 5.3469 5.5411 0.1117 9 8 3.1754 6.1896 -1.2963 10 8 3.0085 6.2685 1.1708 11 6 2.6463 3.4261 1.1956 12 6 2.1808 2.1101 1.2043 13 6 1.8468 1.4492 2.4841 14 8 2.3724 0.3933 2.7780 15 7 0.9599 2.0176 3.3247 16 6 0.2370 3.2257 2.9195 17 6 -1.0172 2.8312 2.1370 18 6 0.7186 1.4273 4.6436 19 6 1.6711 2.0285 5.6448 20 1 2.3845 2.7758 5.3303 21 6 1.6317 1.6244 6.9625 22 7 2.4633 2.1486 7.8362 23 14 0.3974 0.3322 7.5068 24 1 1.0009 -1.0177 7.3697 25 1 0.0276 0.5675 8.9256 26 1 -0.8176 0.4197 6.6575 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2322 1.5108 -2.1235 33 1 3.0606 3.8269 -2.1265 34 1 5.7227 4.9695 -0.7370 35 1 5.7988 6.5330 0.1110 36 1 5.6026 5.0263 1.0380 37 1 2.7630 3.9651 2.1242 38 1 -0.0506 3.7914 3.8057 39 1 0.8803 3.8398 2.2893 40 1 -0.7294 2.2655 1.2507 41 1 -1.6604 2.2169 2.7670 42 1 -1.5548 3.7300 1.8351 43 1 -0.3073 1.6307 4.9505 44 1 0.8761 0.3499 4.5938 45 1 2.4354 1.8646 8.7632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133324992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:28 Heat of formation + Delta-G solvation = -102.693190 kcal Electronic energy + Delta-G solvation = -28555.334985 eV Core-core repulsion = 24664.432208 eV Total energy + Delta-G solvation = -3890.902777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69950 -39.55195 -38.14298 -37.19563 -36.98367 -35.27992 -34.91695 -32.66564 -31.82612 -30.95003 -30.21900 -29.47975 -25.93829 -25.02837 -24.62076 -23.60261 -22.34082 -20.94141 -19.57752 -19.14786 -18.66035 -17.92680 -17.34307 -17.23366 -17.13883 -16.62303 -16.45683 -16.21283 -15.41711 -15.20093 -14.92711 -14.75821 -14.64913 -14.52104 -14.41963 -14.14514 -13.95279 -13.92942 -13.65568 -13.46116 -13.28766 -13.15167 -13.12869 -13.06598 -12.87006 -12.67841 -12.50782 -12.28122 -12.15314 -12.05839 -12.01527 -11.79741 -11.74030 -11.63475 -10.85898 -10.78907 -10.19143 -10.09333 -9.49857 -8.36592 -6.42536 -0.88557 -0.31943 -0.04047 1.30867 1.34347 1.43204 1.60204 1.90193 2.12843 2.28563 2.35614 2.97148 2.98966 3.14454 3.43109 3.62511 3.66075 3.95152 4.00821 4.07971 4.10688 4.25391 4.29664 4.34105 4.40517 4.44282 4.50344 4.66090 4.66815 4.73808 4.83129 4.83871 4.87732 4.91085 4.93771 4.95955 5.05862 5.07169 5.19090 5.34622 5.40922 5.43671 5.54562 5.70079 6.19143 6.53486 6.58586 7.12543 7.26520 8.80293 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.004207 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.886643 B = 6653.284733 C = 7945.112034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.008 3.992 4 C -0.131 4.131 5 C -0.001 4.001 6 C -0.668 4.668 7 S 2.508 3.492 8 C -0.631 4.631 9 O -0.958 6.958 10 O -0.980 6.980 11 C -0.008 4.008 12 C -0.154 4.154 13 C 0.553 3.447 14 O -0.578 6.578 15 N -0.589 5.589 16 C 0.088 3.912 17 C -0.163 4.163 18 C 0.225 3.775 19 C -0.541 4.541 20 H 0.029 0.971 21 C 0.015 3.985 22 N -0.942 5.942 23 Si 0.947 3.053 24 H -0.273 1.273 25 H -0.274 1.274 26 H -0.240 1.240 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.025 0.975 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 3.160 -24.370 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C 0.007 3.993 4 C -0.149 4.149 5 C -0.020 4.020 6 C -0.753 4.753 7 S 2.691 3.309 8 C -0.784 4.784 9 O -0.956 6.956 10 O -0.978 6.978 11 C -0.028 4.028 12 C -0.158 4.158 13 C 0.341 3.659 14 O -0.459 6.459 15 N -0.319 5.319 16 C -0.034 4.034 17 C -0.221 4.221 18 C 0.104 3.896 19 C -0.580 4.580 20 H 0.047 0.953 21 C -0.184 4.184 22 N -0.582 5.582 23 Si 0.770 3.230 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.163 1.163 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.195 0.805 33 H 0.197 0.803 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.752 3.360 -24.055 24.300 hybrid contribution 0.284 -1.165 1.577 1.981 sum -0.468 2.195 -22.478 22.590 Atomic orbital electron populations 1.21793 0.93291 1.02955 1.02205 1.20931 0.97512 0.91656 1.04666 1.20443 0.91190 0.96074 0.91626 1.21517 1.00128 0.95391 0.97877 1.21491 0.90086 0.93401 0.96983 1.30613 1.20099 1.25956 0.98611 1.04864 0.79672 0.73104 0.73302 1.30084 1.19918 1.14289 1.14117 1.93539 1.82960 1.77830 1.41249 1.93573 1.78502 1.75931 1.49757 1.20911 0.91810 0.92257 0.97802 1.19870 1.06998 0.95576 0.93338 1.18687 0.78779 0.84294 0.84116 1.90684 1.53783 1.24351 1.77131 1.47970 1.40140 1.28069 1.15693 1.21918 0.94597 0.86388 1.00492 1.22231 0.96681 1.03095 1.00056 1.19375 0.96426 0.94053 0.79785 1.21533 1.18981 1.23623 0.93819 0.95263 1.25819 0.97796 0.98443 0.96298 1.70041 1.39180 1.45011 1.03970 0.85726 0.80098 0.78835 0.78384 1.19885 1.19862 1.16304 0.90989 0.94312 0.90244 0.87228 0.91848 0.80545 0.80313 0.81901 0.82569 0.84319 0.85374 0.90310 0.89951 0.92013 0.92407 0.89095 0.93269 0.95745 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.84 71.98 0.71 -2.41 16 2 C -0.11 -2.67 5.60 29.85 0.17 -2.50 16 3 C 0.01 0.19 5.17 -19.61 -0.10 0.09 16 4 C -0.13 -2.25 9.67 22.23 0.22 -2.04 16 5 C 0.00 -0.02 9.47 22.33 0.21 0.19 16 6 C -0.67 -14.53 5.65 22.23 0.13 -14.41 16 7 S 2.51 47.06 5.80 -56.49 -0.33 46.74 16 8 C -0.63 -5.88 10.79 113.37 1.22 -4.66 16 9 O -0.96 -20.76 17.12 -127.65 -2.19 -22.94 16 10 O -0.98 -28.08 17.12 -127.65 -2.19 -30.26 16 11 C -0.01 -0.25 7.01 22.53 0.16 -0.09 16 12 C -0.15 -5.09 4.95 -20.09 -0.10 -5.19 16 13 C 0.55 23.77 6.41 86.79 0.56 24.33 16 14 O -0.58 -29.30 14.74 -3.89 -0.06 -29.36 16 15 N -0.59 -25.57 2.46 -829.56 -2.04 -27.62 16 16 C 0.09 3.10 5.91 86.38 0.51 3.61 16 17 C -0.16 -4.39 10.21 71.98 0.73 -3.66 16 18 C 0.23 11.32 4.25 85.64 0.36 11.68 16 19 C -0.54 -32.48 9.94 25.60 0.25 -32.22 16 20 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 21 C 0.01 0.89 5.47 84.66 0.46 1.35 16 22 N -0.94 -60.02 13.96 21.45 0.30 -59.72 16 23 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.01 5.92 -2.39 -0.01 1.00 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.85 8.06 -2.38 -0.02 1.83 16 31 H 0.06 2.07 5.91 -2.39 -0.01 2.05 16 32 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.18 1.71 7.57 -2.91 -0.02 1.68 16 34 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.13 4.28 6.93 -2.91 -0.02 4.26 16 38 H 0.08 2.87 8.04 -2.39 -0.02 2.85 16 39 H 0.08 2.74 4.53 -2.39 -0.01 2.73 16 40 H 0.06 1.60 5.95 -2.38 -0.01 1.58 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 2.28 7.13 -2.39 -0.02 2.27 16 44 H 0.02 1.30 6.78 -2.39 -0.02 1.28 16 45 H 0.27 15.90 8.31 -92.72 -0.77 15.13 16 Total: -1.00 -88.62 378.00 1.82 -86.80 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.94 Total: 15.58 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 5.49 Total: -25.93 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.74 Total: -87.33 kcal Atomic # 8 Polarization: -78.14 SS G_CDS: -4.43 Total: -82.57 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Atomic # 16 Polarization: 47.06 SS G_CDS: -0.33 Total: 46.74 kcal Total: -88.62 1.82 -86.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133324992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.893 kcal (2) G-P(sol) polarization free energy of solvation -88.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds