Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 C 1.53001 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.50783 * 54.90159 * 4 3 2 6 6 C 1.53297 * 109.51227 * 174.99803 * 4 3 2 7 7 N 1.47156 * 108.38217 * 172.27727 * 6 4 3 8 8 S 1.65599 * 120.97809 * 129.44530 * 7 6 4 9 9 O 1.42101 * 106.40493 * 336.46044 * 8 7 6 10 10 O 1.42098 * 106.40011 * 203.53917 * 8 7 6 11 11 C 1.76201 * 107.21686 * 90.00100 * 8 7 6 12 12 C 1.38630 * 119.75169 * 269.72120 * 11 8 7 13 13 C 1.37617 * 120.25373 * 180.27728 * 12 11 8 14 14 C 1.40719 * 119.73931 * 0.02562 * 13 12 11 15 15 C 1.41396 * 120.23852 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00592 * 24.41007 * 15 14 13 17 17 C 1.39944 * 119.99908 * 204.39840 * 15 14 13 18 18 N 1.30826 * 119.99976 * 17.87941 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 197.87011 * 17 15 14 20 20 H 1.48500 * 109.46987 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47023 * 120.00457 * 19 17 15 22 22 H 1.48498 * 109.47595 * 240.00442 * 19 17 15 23 23 C 1.40713 * 119.51401 * 359.97438 * 14 13 12 24 24 C 1.37612 * 119.74548 * 359.97438 * 23 14 13 25 25 C 1.47150 * 118.03830 * 309.71927 * 7 6 4 26 26 C 1.52885 * 108.60567 * 50.22854 * 25 7 6 27 27 O 1.42960 * 109.29823 * 307.93128 * 26 25 7 28 28 H 1.09010 * 109.46877 * 299.99810 * 1 2 3 29 29 H 1.08996 * 109.47193 * 59.99428 * 1 2 3 30 30 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46824 * 240.00571 * 2 1 3 32 32 H 1.08996 * 109.47193 * 120.00572 * 2 1 3 33 33 H 1.09003 * 109.46805 * 60.00560 * 3 2 1 34 34 H 1.08996 * 109.47554 * 300.00351 * 3 2 1 35 35 H 1.08996 * 109.67784 * 52.56248 * 6 4 3 36 36 H 1.08994 * 109.71612 * 292.02447 * 6 4 3 37 37 H 1.08000 * 119.87101 * 0.26286 * 12 11 8 38 38 H 1.07995 * 120.13211 * 180.02562 * 13 12 11 39 39 H 0.96994 * 120.00452 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.12493 * 179.97438 * 23 14 13 41 41 H 1.08000 * 119.87715 * 180.02562 * 24 23 14 42 42 H 1.09001 * 109.68207 * 170.00538 * 25 7 6 43 43 H 1.08996 * 109.68554 * 290.56112 * 25 7 6 44 44 H 1.09004 * 109.57953 * 187.92422 * 26 25 7 45 45 H 1.08999 * 109.40871 * 67.84360 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9344 0.8516 -0.8398 6 6 4.0821 2.8819 -0.1253 7 7 5.5413 2.8736 0.0644 8 16 6.5462 3.6191 -1.0204 9 8 5.8340 3.6836 -2.2484 10 8 7.8143 2.9916 -0.8895 11 6 6.7560 5.2827 -0.4790 12 6 5.8878 6.2665 -0.9265 13 6 6.0456 7.5701 -0.5147 14 6 7.0935 7.9027 0.3636 15 6 7.2657 9.2388 0.7930 16 1 6.4261 9.9181 0.7944 17 6 8.5242 9.6810 1.2163 18 7 9.5968 9.0028 0.8986 19 14 8.6725 11.2399 2.2349 20 1 7.3221 11.8163 2.4570 21 1 9.2945 10.9182 3.5444 22 1 9.5187 12.2240 1.5134 23 6 7.9687 6.8959 0.8113 24 6 7.7912 5.5988 0.3872 25 6 6.0817 2.1781 1.2432 26 6 5.4718 0.7775 1.3052 27 8 4.0480 0.8781 1.2241 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.6163 3.5053 0.6378 36 1 3.8427 3.2721 -1.1145 37 1 5.0846 6.0088 -1.6010 38 1 5.3678 8.3348 -0.8642 39 1 10.4690 9.3090 1.1923 40 1 8.7766 7.1402 1.4851 41 1 8.4615 4.8244 0.7299 42 1 7.1658 2.1017 1.1595 43 1 5.8206 2.7294 2.1465 44 1 5.7500 0.2992 2.2444 45 1 5.8431 0.1835 0.4701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155294711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -119.063456 kcal Electronic energy + Delta-G solvation = -27683.824339 eV Core-core repulsion = 23792.211694 eV Total energy + Delta-G solvation = -3891.612645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.45717 -37.59845 -36.65068 -35.33347 -35.19574 -34.51336 -34.06588 -31.48512 -30.28585 -29.49928 -28.04732 -25.92166 -25.75342 -23.33749 -21.57883 -21.38375 -21.15158 -20.91826 -18.49993 -17.66476 -17.38743 -16.76212 -16.62950 -15.78653 -15.48121 -15.11651 -15.06891 -14.69902 -14.40087 -14.23336 -13.98094 -13.47887 -13.26210 -13.24034 -12.99561 -12.47100 -12.29655 -12.25653 -12.14467 -11.78795 -11.75703 -11.59756 -11.50130 -11.37231 -11.27881 -11.23757 -11.20342 -11.10363 -10.91040 -10.79436 -10.48059 -10.35184 -10.10938 -9.78197 -9.60992 -9.51008 -8.60739 -7.97908 -7.73446 -7.16634 -4.82559 1.10471 2.22214 2.85253 2.87597 2.90175 2.93621 3.48179 3.64469 3.67732 4.21464 4.44106 4.49918 4.82148 4.88591 4.89127 4.95451 5.05289 5.12370 5.23633 5.34425 5.37157 5.43369 5.49256 5.51696 5.57870 5.69532 5.73130 5.84443 5.90192 5.99622 6.02450 6.07676 6.09279 6.20102 6.24064 6.59018 6.65785 6.74090 6.94274 7.02312 7.13064 7.31132 7.39570 7.60260 7.74327 7.94014 8.29225 8.48613 8.62280 9.74855 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.002801 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.207851 B = 9994.788191 C =10398.009293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.080 3.920 5 H 0.062 0.938 6 C 0.092 3.908 7 N -1.007 6.007 8 S 2.690 3.310 9 O -0.982 6.982 10 O -0.980 6.980 11 C -0.787 4.787 12 C 0.002 3.998 13 C -0.238 4.238 14 C 0.139 3.861 15 C -0.434 4.434 16 H 0.088 0.912 17 C 0.071 3.929 18 N -0.764 5.764 19 Si 0.917 3.083 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.183 4.183 24 C -0.015 4.015 25 C 0.085 3.915 26 C 0.053 3.947 27 O -0.375 6.375 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.289 0.711 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 -11.606 2.660 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.150 4.150 4 C 0.021 3.979 5 H 0.080 0.920 6 C -0.034 4.034 7 N -0.843 5.843 8 S 2.792 3.208 9 O -0.972 6.972 10 O -0.971 6.971 11 C -0.883 4.883 12 C -0.019 4.019 13 C -0.259 4.259 14 C 0.135 3.865 15 C -0.461 4.461 16 H 0.106 0.894 17 C -0.151 4.151 18 N -0.386 5.386 19 Si 0.740 3.260 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.204 4.204 24 C -0.036 4.036 25 C -0.041 4.041 26 C -0.026 4.026 27 O -0.294 6.294 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.288 -12.114 2.060 15.404 hybrid contribution 0.418 1.499 0.666 1.693 sum -8.870 -10.616 2.725 14.099 Atomic orbital electron populations 1.21779 0.95961 1.01451 1.01778 1.21468 0.95516 0.96479 1.02441 1.21628 0.92150 0.97981 1.03243 1.22479 0.94725 0.93297 0.87425 0.91986 1.22061 0.80148 0.97588 1.03618 1.58072 1.16354 1.69617 1.40236 1.01368 0.72177 0.74525 0.72767 1.93464 1.74056 1.88175 1.41532 1.93470 1.40425 1.76598 1.86567 1.29155 1.13214 1.19608 1.26353 1.20140 0.94523 0.93009 0.94190 1.21024 1.04292 0.95331 1.05239 1.17860 0.89332 0.93095 0.86181 1.19974 0.95432 0.96225 1.34492 0.89370 1.26160 0.95221 0.99548 0.94175 1.69829 0.99739 1.37118 1.31940 0.86100 0.79975 0.80217 0.79688 1.17963 1.19215 1.19486 1.21341 1.03123 0.91370 1.04521 1.20233 0.93254 0.96834 0.93240 1.21965 0.99876 0.93401 0.88821 1.22827 0.81335 0.95857 1.02549 1.87907 1.20789 1.82694 1.37998 0.92723 0.92802 0.92928 0.92250 0.91237 0.90721 0.90164 0.90679 0.88157 0.87910 0.88146 0.89949 0.85958 0.87985 0.88045 0.90685 0.87852 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.07 5.83 -26.73 -0.16 -1.22 16 3 C -0.11 -1.07 4.93 -26.73 -0.13 -1.21 16 4 C 0.08 0.95 2.77 -26.58 -0.07 0.88 16 5 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 6 C 0.09 1.25 6.00 -3.53 -0.02 1.23 16 7 N -1.01 -15.77 3.35 -113.30 -0.38 -16.15 16 8 S 2.69 52.54 5.75 -107.50 -0.62 51.93 16 9 O -0.98 -20.64 15.88 -57.17 -0.91 -21.55 16 10 O -0.98 -20.91 15.88 -57.17 -0.91 -21.82 16 11 C -0.79 -17.45 6.00 -39.29 -0.24 -17.68 16 12 C 0.00 0.03 9.49 -39.66 -0.38 -0.34 16 13 C -0.24 -5.63 9.80 -38.87 -0.38 -6.01 16 14 C 0.14 3.52 5.57 -106.82 -0.60 2.93 16 15 C -0.43 -10.61 9.05 -37.74 -0.34 -10.95 16 16 H 0.09 2.03 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 18 N -0.76 -18.29 10.95 55.55 0.61 -17.68 16 19 Si 0.92 16.92 29.60 -169.99 -5.03 11.88 16 20 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.18 -4.58 8.70 -38.88 -0.34 -4.92 16 24 C -0.02 -0.35 9.49 -39.66 -0.38 -0.73 16 25 C 0.09 1.14 6.68 -3.75 -0.03 1.12 16 26 C 0.05 0.60 6.97 37.10 0.26 0.86 16 27 O -0.38 -4.67 9.94 -35.23 -0.35 -5.02 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.66 7.83 -51.93 -0.41 0.26 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.36 6.95 -51.93 -0.36 1.00 16 37 H 0.10 2.06 7.59 -52.49 -0.40 1.66 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 40 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 41 H 0.10 2.18 7.60 -52.49 -0.40 1.79 16 42 H 0.10 1.37 6.94 -51.93 -0.36 1.01 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -29.71 375.88 -11.31 -41.02 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.87 Total: 7.02 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: -2.51 Total: -35.28 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.23 Total: -33.83 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -2.17 Total: -48.39 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.62 Total: 51.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.71 -11.31 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155294711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.047 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds