Wall clock time and date at job start Sat Apr 11 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99938 * 2 1 4 4 C 1.53008 * 109.47082 * 274.82318 * 3 2 1 5 5 H 1.09005 * 112.77814 * 315.88948 * 4 3 2 6 6 C 1.53500 * 113.46789 * 86.67240 * 4 3 2 7 7 C 1.53237 * 83.42481 * 140.68056 * 6 4 3 8 8 N 1.47058 * 113.46813 * 185.10832 * 4 3 2 9 9 C 1.34780 * 136.05863 * 38.06758 * 8 4 3 10 10 O 1.21281 * 120.00109 * 355.00309 * 9 8 4 11 11 C 1.50700 * 120.00052 * 175.00789 * 9 8 4 12 12 S 1.80999 * 109.47145 * 179.97438 * 11 9 8 13 13 C 1.76194 * 100.00247 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99912 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00350 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00501 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99631 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47038 * 90.00382 * 17 15 13 19 19 H 1.48500 * 109.46970 * 210.00051 * 17 15 13 20 20 H 1.48501 * 109.47497 * 330.00195 * 17 15 13 21 21 C 1.34777 * 120.00364 * 180.02562 * 2 1 3 22 22 O 1.21610 * 120.00183 * 179.79265 * 21 2 1 23 23 C 1.47238 * 119.99725 * 359.78862 * 21 2 1 24 24 C 1.37006 * 127.19038 * 189.34851 * 23 21 2 25 25 N 1.33313 * 106.37033 * 179.97438 * 24 23 21 26 26 N 1.28513 * 109.44152 * 0.02562 * 25 24 23 27 27 N 1.28707 * 110.63686 * 359.75465 * 26 25 24 28 28 H 0.97006 * 126.03034 * 180.26499 * 27 26 25 29 29 H 1.08999 * 109.47289 * 96.24025 * 1 2 3 30 30 H 1.09000 * 109.46584 * 216.24189 * 1 2 3 31 31 H 1.09004 * 109.47195 * 336.23389 * 1 2 3 32 32 H 1.08994 * 109.47509 * 154.82703 * 3 2 1 33 33 H 1.08993 * 109.47083 * 34.82005 * 3 2 1 34 34 H 1.09005 * 114.20248 * 254.43774 * 6 4 3 35 35 H 1.09000 * 114.20488 * 27.05962 * 6 4 3 36 36 H 1.09003 * 113.37719 * 219.29110 * 7 6 4 37 37 H 1.08997 * 113.47267 * 88.93492 * 7 6 4 38 38 H 1.09000 * 109.47103 * 59.99973 * 11 9 8 39 39 H 1.08997 * 109.47098 * 299.99226 * 11 9 8 40 40 H 0.96993 * 120.00604 * 180.02562 * 16 15 13 41 41 H 1.07997 * 126.80812 * 359.93071 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3474 1.7711 -1.4375 5 1 2.6348 0.9820 -2.1325 6 6 1.1538 2.6065 -1.9207 7 6 2.2427 3.4549 -2.5861 8 7 3.1745 2.9817 -1.5515 9 6 4.2916 3.4529 -0.9628 10 8 4.7951 2.8441 -0.0426 11 6 4.9149 4.7364 -1.4477 12 16 6.3897 5.1004 -0.4636 13 6 6.9000 6.6065 -1.2224 14 1 6.3305 7.0178 -2.0427 15 6 8.0344 7.2637 -0.7668 16 7 8.4159 8.3885 -1.3340 17 14 9.0198 6.5518 0.6516 18 1 10.0644 5.6400 0.1201 19 1 9.6642 7.6545 1.4092 20 1 8.1142 5.7951 1.5530 21 6 2.1389 -1.1672 -0.0005 22 8 3.3550 -1.1671 -0.0043 23 6 1.4028 -2.4423 0.0036 24 6 1.9219 -3.6977 0.1810 25 7 0.8937 -4.5431 0.1091 26 7 -0.1894 -3.8828 -0.0973 27 7 0.0545 -2.6209 -0.1644 28 1 -0.6003 -1.9201 -0.3098 29 1 -0.3634 -0.1117 -1.0216 30 1 -0.3632 -0.8289 0.6076 31 1 -0.3634 0.9405 0.4142 32 1 3.1846 1.1185 0.4371 33 1 1.6485 2.0052 0.5868 34 1 0.4989 2.0872 -2.6204 35 1 0.6140 3.1175 -1.1235 36 1 2.0468 4.5261 -2.5369 37 1 2.5018 3.1191 -3.5902 38 1 4.1982 5.5509 -1.3424 39 1 5.1942 4.6313 -2.4960 40 1 9.2089 8.8476 -1.0159 41 1 2.9586 -3.9519 0.3456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757295544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:41 Heat of formation + Delta-G solvation = 97.576527 kcal Electronic energy + Delta-G solvation = -26389.833928 eV Core-core repulsion = 22436.367906 eV Total energy + Delta-G solvation = -3953.466022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92337 -40.93067 -39.82346 -37.70224 -36.40774 -34.06410 -32.46431 -32.07817 -30.97755 -29.49429 -28.31549 -27.69959 -25.63847 -24.90465 -23.76086 -22.91605 -22.34786 -21.25796 -19.15882 -18.59996 -17.79465 -17.47218 -17.16917 -16.90507 -16.72234 -16.16219 -15.43796 -15.22114 -14.95029 -14.86832 -14.60522 -14.32516 -13.95817 -13.88826 -13.59026 -13.27797 -12.92741 -12.82276 -12.75076 -12.68212 -12.28345 -12.00857 -11.85038 -11.69458 -11.28843 -11.25422 -11.05651 -11.02347 -10.69542 -10.63214 -10.03413 -9.87428 -9.53897 -9.39695 -9.02596 -8.76385 -8.53035 -6.95093 -6.31221 -4.03434 0.37729 1.79687 1.83735 2.16464 2.51602 2.60333 2.87443 3.10090 3.32414 3.49249 3.54478 3.55828 3.91379 3.97775 4.07571 4.30777 4.35354 4.43061 4.47416 4.54539 4.62219 4.68359 4.69560 4.77144 4.94637 5.07765 5.09761 5.18495 5.24652 5.32665 5.50347 5.57907 5.63971 5.67853 5.79495 5.96976 5.97884 6.04970 6.57019 7.41320 7.67929 7.75932 7.91693 8.35308 8.38847 9.14847 10.77894 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002267 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.355840 B =12348.317967 C =13256.197167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.608 5.608 3 C 0.108 3.892 4 C 0.122 3.878 5 H 0.092 0.908 6 C -0.154 4.154 7 C 0.102 3.898 8 N -0.647 5.647 9 C 0.560 3.440 10 O -0.509 6.509 11 C -0.116 4.116 12 S -0.140 6.140 13 C -0.522 4.522 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.591 3.409 22 O -0.494 6.494 23 C -0.064 4.064 24 C 0.035 3.965 25 N -0.268 5.268 26 N -0.052 5.052 27 N -0.383 5.383 28 H 0.452 0.548 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.070 -17.121 -1.018 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.342 5.342 3 C -0.014 4.014 4 C 0.017 3.983 5 H 0.110 0.890 6 C -0.192 4.192 7 C -0.021 4.021 8 N -0.387 5.387 9 C 0.349 3.651 10 O -0.382 6.382 11 C -0.266 4.266 12 S 0.086 5.914 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.516 5.516 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C 0.375 3.625 22 O -0.365 6.365 23 C -0.198 4.198 24 C -0.124 4.124 25 N -0.133 5.133 26 N -0.034 5.034 27 N -0.118 5.118 28 H 0.307 0.693 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.266 -18.915 0.417 29.988 hybrid contribution 0.290 2.007 -0.813 2.185 sum -22.976 -16.908 -0.396 28.530 Atomic orbital electron populations 1.22264 0.80326 1.04596 1.01900 1.47633 1.06539 1.06169 1.73883 1.21932 1.00077 0.82892 0.96543 1.22980 0.88290 0.89898 0.97161 0.89007 1.23553 0.95821 0.98468 1.01365 1.22828 0.85993 1.00719 0.92597 1.49716 1.26627 1.21485 1.40832 1.19959 0.77056 0.86275 0.81770 1.90727 1.60050 1.59509 1.27951 1.23218 1.02304 0.96460 1.04611 1.84824 1.27990 1.31995 1.46571 1.22295 1.15473 1.07031 1.22121 0.89403 1.24710 0.96106 0.93996 0.96484 1.69931 1.24961 1.15794 1.40934 0.86737 0.81962 0.79831 0.83340 1.19157 1.19907 1.15909 1.16876 0.86744 0.81361 0.77504 1.90971 1.11853 1.85819 1.47863 1.22356 0.84287 0.98120 1.15005 1.23995 1.01199 0.86977 1.00235 1.75021 0.95159 1.26936 1.16229 1.78199 1.21286 0.87999 1.15930 1.46763 1.07988 1.09267 1.47798 0.69266 0.91321 0.91494 0.88327 0.86785 0.89282 0.89415 0.88517 0.89830 0.89720 0.88611 0.88602 0.91909 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.11 8.97 59.85 0.54 0.65 16 2 N -0.61 -4.35 2.87 -182.92 -0.53 -4.87 16 3 C 0.11 1.05 5.23 -4.04 -0.02 1.03 16 4 C 0.12 1.13 4.29 -72.41 -0.31 0.82 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.15 -0.81 8.00 -26.35 -0.21 -1.02 16 7 C 0.10 0.81 8.40 -8.66 -0.07 0.74 16 8 N -0.65 -8.16 3.57 -177.65 -0.63 -8.79 16 9 C 0.56 10.00 8.02 -10.98 -0.09 9.92 16 10 O -0.51 -10.99 15.21 5.56 0.08 -10.90 16 11 C -0.12 -2.24 5.99 36.01 0.22 -2.03 16 12 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 13 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 14 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 15 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 16 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 17 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 21 C 0.59 5.84 7.67 -12.60 -0.10 5.75 16 22 O -0.49 -7.16 16.44 5.27 0.09 -7.07 16 23 C -0.06 -0.52 6.74 -82.33 -0.55 -1.08 16 24 C 0.04 0.32 11.88 -17.36 -0.21 0.11 16 25 N -0.27 -2.76 12.35 30.47 0.38 -2.38 16 26 N -0.05 -0.46 13.35 60.35 0.81 0.35 16 27 N -0.38 -2.25 6.07 33.31 0.20 -2.05 16 28 H 0.45 0.93 5.07 -190.33 -0.97 -0.03 16 29 H 0.07 -0.01 7.81 -51.93 -0.41 -0.41 16 30 H 0.07 0.09 5.14 -51.93 -0.27 -0.18 16 31 H 0.10 0.06 7.88 -51.93 -0.41 -0.35 16 32 H 0.11 1.67 6.14 -51.93 -0.32 1.35 16 33 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.43 7.94 -51.93 -0.41 0.02 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -38.73 362.70 -6.38 -45.11 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.71 Total: -3.67 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.59 Total: 2.92 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 1.00 Total: -43.40 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.97 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.73 -6.38 -45.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757295544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.689 kcal (2) G-P(sol) polarization free energy of solvation -38.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds