Wall clock time and date at job start Sat Apr 11 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99938 * 2 1 4 4 C 1.53008 * 109.47082 * 274.82318 * 3 2 1 5 5 H 1.09005 * 112.77814 * 315.88948 * 4 3 2 6 6 C 1.53500 * 113.46789 * 86.67240 * 4 3 2 7 7 C 1.53237 * 83.42481 * 140.68056 * 6 4 3 8 8 N 1.47058 * 113.46813 * 185.10832 * 4 3 2 9 9 C 1.34780 * 136.05863 * 38.06758 * 8 4 3 10 10 O 1.21281 * 120.00109 * 355.00309 * 9 8 4 11 11 C 1.50700 * 120.00052 * 175.00789 * 9 8 4 12 12 S 1.80999 * 109.47145 * 179.97438 * 11 9 8 13 13 C 1.76194 * 100.00247 * 180.02562 * 12 11 9 14 14 H 1.07997 * 119.99912 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00350 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00501 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99631 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47038 * 90.00382 * 17 15 13 19 19 H 1.48500 * 109.46970 * 210.00051 * 17 15 13 20 20 H 1.48501 * 109.47497 * 330.00195 * 17 15 13 21 21 C 1.34777 * 120.00364 * 180.02562 * 2 1 3 22 22 O 1.21610 * 120.00183 * 179.79265 * 21 2 1 23 23 C 1.47238 * 119.99725 * 359.78862 * 21 2 1 24 24 C 1.37006 * 127.19038 * 189.34851 * 23 21 2 25 25 N 1.33313 * 106.37033 * 179.97438 * 24 23 21 26 26 N 1.28513 * 109.44152 * 0.02562 * 25 24 23 27 27 N 1.28707 * 110.63686 * 359.75465 * 26 25 24 28 28 H 0.97006 * 126.03034 * 180.26499 * 27 26 25 29 29 H 1.08999 * 109.47289 * 96.24025 * 1 2 3 30 30 H 1.09000 * 109.46584 * 216.24189 * 1 2 3 31 31 H 1.09004 * 109.47195 * 336.23389 * 1 2 3 32 32 H 1.08994 * 109.47509 * 154.82703 * 3 2 1 33 33 H 1.08993 * 109.47083 * 34.82005 * 3 2 1 34 34 H 1.09005 * 114.20248 * 254.43774 * 6 4 3 35 35 H 1.09000 * 114.20488 * 27.05962 * 6 4 3 36 36 H 1.09003 * 113.37719 * 219.29110 * 7 6 4 37 37 H 1.08997 * 113.47267 * 88.93492 * 7 6 4 38 38 H 1.09000 * 109.47103 * 59.99973 * 11 9 8 39 39 H 1.08997 * 109.47098 * 299.99226 * 11 9 8 40 40 H 0.96993 * 120.00604 * 180.02562 * 16 15 13 41 41 H 1.07997 * 126.80812 * 359.93071 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3474 1.7711 -1.4375 5 1 2.6348 0.9820 -2.1325 6 6 1.1538 2.6065 -1.9207 7 6 2.2427 3.4549 -2.5861 8 7 3.1745 2.9817 -1.5515 9 6 4.2916 3.4529 -0.9628 10 8 4.7951 2.8441 -0.0426 11 6 4.9149 4.7364 -1.4477 12 16 6.3897 5.1004 -0.4636 13 6 6.9000 6.6065 -1.2224 14 1 6.3305 7.0178 -2.0427 15 6 8.0344 7.2637 -0.7668 16 7 8.4159 8.3885 -1.3340 17 14 9.0198 6.5518 0.6516 18 1 10.0644 5.6400 0.1201 19 1 9.6642 7.6545 1.4092 20 1 8.1142 5.7951 1.5530 21 6 2.1389 -1.1672 -0.0005 22 8 3.3550 -1.1671 -0.0043 23 6 1.4028 -2.4423 0.0036 24 6 1.9219 -3.6977 0.1810 25 7 0.8937 -4.5431 0.1091 26 7 -0.1894 -3.8828 -0.0973 27 7 0.0545 -2.6209 -0.1644 28 1 -0.6003 -1.9201 -0.3098 29 1 -0.3634 -0.1117 -1.0216 30 1 -0.3632 -0.8289 0.6076 31 1 -0.3634 0.9405 0.4142 32 1 3.1846 1.1185 0.4371 33 1 1.6485 2.0052 0.5868 34 1 0.4989 2.0872 -2.6204 35 1 0.6140 3.1175 -1.1235 36 1 2.0468 4.5261 -2.5369 37 1 2.5018 3.1191 -3.5902 38 1 4.1982 5.5509 -1.3424 39 1 5.1942 4.6313 -2.4960 40 1 9.2089 8.8476 -1.0159 41 1 2.9586 -3.9519 0.3456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757295544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:40 Heat of formation + Delta-G solvation = 66.787737 kcal Electronic energy + Delta-G solvation = -26391.169031 eV Core-core repulsion = 22436.367906 eV Total energy + Delta-G solvation = -3954.801124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.57197 -41.77374 -40.68096 -38.92843 -37.10575 -34.72755 -34.69936 -32.81854 -32.17423 -30.13276 -29.51045 -28.18319 -27.86558 -25.58471 -24.40376 -23.57811 -23.22053 -21.92033 -20.38578 -19.53976 -19.20256 -18.19303 -18.10398 -17.75526 -17.55360 -17.19653 -16.98800 -16.59101 -16.16994 -15.81268 -15.50946 -15.45695 -15.03941 -14.91763 -14.49098 -14.33255 -13.89883 -13.86385 -13.51667 -13.43491 -13.38014 -13.31324 -13.04736 -12.80128 -12.68651 -12.41240 -12.33503 -11.88986 -11.88662 -11.75076 -11.48829 -11.19908 -10.85895 -10.74096 -10.56879 -10.06747 -9.73721 -9.03751 -8.54175 -6.25487 -0.28699 0.90463 1.09809 1.21910 1.29293 1.40693 1.47648 1.52714 1.66730 1.81747 2.06842 2.22593 2.65101 2.83928 2.99216 3.26628 3.43420 3.57319 3.74190 3.82299 3.88283 3.95158 3.99752 4.03804 4.16313 4.34608 4.38582 4.47927 4.57494 4.58653 4.63657 4.73231 4.85379 4.93095 4.96110 5.15376 5.33548 5.57760 5.68222 5.95850 6.08370 6.58340 6.71644 6.90983 7.05436 7.09394 8.58085 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002267 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.355840 B =12348.317967 C =13256.197167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.596 5.596 3 C 0.113 3.887 4 C 0.115 3.885 5 H 0.087 0.913 6 C -0.119 4.119 7 C 0.090 3.910 8 N -0.649 5.649 9 C 0.557 3.443 10 O -0.560 6.560 11 C -0.099 4.099 12 S -0.178 6.178 13 C -0.528 4.528 14 H 0.063 0.937 15 C 0.047 3.953 16 N -0.915 5.915 17 Si 0.913 3.087 18 H -0.264 1.264 19 H -0.257 1.257 20 H -0.238 1.238 21 C 0.589 3.411 22 O -0.553 6.553 23 C -0.059 4.059 24 C 0.025 3.975 25 N -0.295 5.295 26 N -0.057 5.057 27 N -0.352 5.352 28 H 0.469 0.531 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.277 0.723 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.701 -17.503 -1.598 32.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.328 5.328 3 C -0.010 4.010 4 C 0.010 3.990 5 H 0.105 0.895 6 C -0.156 4.156 7 C -0.031 4.031 8 N -0.386 5.386 9 C 0.346 3.654 10 O -0.438 6.438 11 C -0.250 4.250 12 S 0.049 5.951 13 C -0.675 4.675 14 H 0.081 0.919 15 C -0.159 4.159 16 N -0.552 5.552 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.181 1.181 20 H -0.162 1.162 21 C 0.375 3.625 22 O -0.428 6.428 23 C -0.194 4.194 24 C -0.135 4.135 25 N -0.159 5.159 26 N -0.040 5.040 27 N -0.091 5.091 28 H 0.329 0.671 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -27.033 -19.276 -0.212 33.202 hybrid contribution 1.201 2.113 -0.757 2.546 sum -25.832 -17.163 -0.969 31.029 Atomic orbital electron populations 1.22732 0.76604 1.06470 1.04604 1.47636 1.08637 1.04376 1.72182 1.21730 0.98153 0.84232 0.96935 1.23287 0.89584 0.89260 0.96827 0.89531 1.23539 0.94159 0.96129 1.01785 1.23285 0.85416 1.02063 0.92357 1.49799 1.24852 1.23048 1.40907 1.19571 0.78369 0.85573 0.81869 1.90711 1.62077 1.60650 1.30346 1.23158 0.99697 0.98483 1.03676 1.84778 1.31915 1.30164 1.48257 1.22420 1.15332 1.08271 1.21497 0.91881 1.25535 0.97154 0.94374 0.98815 1.70001 1.25845 1.16942 1.42450 0.85892 0.80481 0.79535 0.80614 1.18920 1.18065 1.16188 1.17073 0.86141 0.82390 0.76875 1.90950 1.14415 1.86638 1.50841 1.22009 0.84973 0.97039 1.15374 1.24222 1.01581 0.87431 1.00259 1.75018 0.95644 1.27769 1.17510 1.78129 1.20945 0.88867 1.16028 1.46736 1.07434 1.08975 1.45944 0.67110 0.87795 0.90654 0.85797 0.92280 0.87302 0.85198 0.86670 0.88928 0.88194 0.86982 0.87735 0.91302 0.77218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.02 8.97 127.77 1.15 1.12 16 2 N -0.60 -7.21 2.87 -850.90 -2.45 -9.66 16 3 C 0.11 2.05 5.23 86.38 0.45 2.50 16 4 C 0.11 1.84 4.29 41.79 0.18 2.02 16 5 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 6 C -0.12 -0.60 8.00 30.84 0.25 -0.35 16 7 C 0.09 1.08 8.40 83.08 0.70 1.78 16 8 N -0.65 -15.25 3.57 -834.36 -2.98 -18.22 16 9 C 0.56 19.93 8.02 87.66 0.70 20.63 16 10 O -0.56 -25.05 15.21 -3.03 -0.05 -25.09 16 11 C -0.10 -3.85 5.99 71.24 0.43 -3.42 16 12 S -0.18 -9.18 18.55 -56.49 -1.05 -10.23 16 13 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 14 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 15 C 0.05 2.77 5.50 84.86 0.47 3.24 16 16 N -0.91 -55.73 13.97 21.65 0.30 -55.43 16 17 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 18 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 21 C 0.59 11.40 7.67 86.61 0.66 12.07 16 22 O -0.55 -16.92 16.44 -4.06 -0.07 -16.99 16 23 C -0.06 -0.90 6.74 40.41 0.27 -0.63 16 24 C 0.03 0.45 11.88 84.18 1.00 1.45 16 25 N -0.30 -5.86 12.35 -57.51 -0.71 -6.57 16 26 N -0.06 -0.91 13.35 37.02 0.49 -0.41 16 27 N -0.35 -3.22 6.07 -48.52 -0.29 -3.51 16 28 H 0.47 0.08 5.07 -219.90 -1.12 -1.04 16 29 H 0.10 -0.69 7.81 -2.39 -0.02 -0.70 16 30 H 0.08 -0.13 5.14 -2.39 -0.01 -0.15 16 31 H 0.12 -0.57 7.88 -2.39 -0.02 -0.58 16 32 H 0.06 1.81 6.14 -2.39 -0.01 1.80 16 33 H 0.11 1.49 7.66 -2.39 -0.02 1.48 16 34 H 0.13 -0.25 8.14 -2.38 -0.02 -0.27 16 35 H 0.11 0.27 7.94 -2.39 -0.02 0.26 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 39 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 40 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.21 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -91.26 362.70 1.98 -89.28 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.94 Total: 10.15 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -5.63 Total: -93.80 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.11 Total: -42.08 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.05 Total: -10.23 kcal Total: -91.26 1.98 -89.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757295544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.066 kcal (2) G-P(sol) polarization free energy of solvation -91.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds