Wall clock time and date at job start Sat Apr 11 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34581 * 125.74999 * 2 1 4 4 N 1.30875 * 107.62573 * 180.02562 * 3 2 1 5 5 C 1.34540 * 107.27046 * 0.02562 * 4 3 2 6 6 C 1.47872 * 126.05015 * 179.97438 * 5 4 3 7 7 O 1.21560 * 119.99914 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99730 * 0.02634 * 6 5 4 9 9 C 1.46505 * 119.99611 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46831 * 174.96827 * 9 8 6 11 11 N 1.46495 * 115.54715 * 85.77478 * 10 9 8 12 12 C 1.34779 * 120.00375 * 65.40694 * 11 10 9 13 13 O 1.21283 * 119.99626 * 354.97760 * 12 11 10 14 14 C 1.50700 * 120.00262 * 174.97499 * 12 11 10 15 15 S 1.81006 * 109.46951 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99846 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00231 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00450 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47294 * 89.99398 * 20 18 16 22 22 H 1.48497 * 109.47047 * 210.00145 * 20 18 16 23 23 H 1.48502 * 109.46965 * 329.99758 * 20 18 16 24 24 C 1.52993 * 117.49722 * 231.44326 * 10 9 8 25 25 C 1.52997 * 117.49928 * 300.10289 * 10 9 8 26 26 N 1.28855 * 125.74994 * 180.32157 * 2 1 3 27 27 H 1.08998 * 109.47432 * 89.99809 * 1 2 3 28 28 H 1.09003 * 109.47353 * 209.99478 * 1 2 3 29 29 H 1.09002 * 109.47016 * 329.99438 * 1 2 3 30 30 H 1.07997 * 126.18721 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00486 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47545 * 54.97056 * 9 8 6 33 33 H 1.08996 * 109.46839 * 294.96726 * 9 8 6 34 34 H 0.97002 * 119.99938 * 245.40447 * 11 10 9 35 35 H 1.08999 * 109.47302 * 300.00003 * 14 12 11 36 36 H 1.08998 * 109.46945 * 60.00407 * 14 12 11 37 37 H 0.97004 * 119.99765 * 180.02562 * 19 18 16 38 38 H 1.09005 * 117.49813 * 215.00448 * 24 10 9 39 39 H 1.08997 * 117.50305 * 0.02987 * 24 10 9 40 40 H 1.08999 * 117.49998 * 359.97438 * 25 10 9 41 41 H 1.09000 * 117.49970 * 144.97302 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 -0.0006 5 6 3.4750 -0.6601 -0.0015 6 6 4.6575 -1.5481 -0.0029 7 8 4.5113 -2.7549 -0.0041 8 7 5.8971 -1.0194 -0.0028 9 6 7.0686 -1.8991 -0.0048 10 6 8.3393 -1.0560 -0.1308 11 7 8.8801 -0.5364 1.1276 12 6 9.3586 -1.3866 2.0576 13 8 9.2589 -2.5840 1.8930 14 6 10.0177 -0.8493 3.3018 15 16 10.5509 -2.2285 4.3456 16 6 11.2645 -1.3380 5.6882 17 1 11.2706 -0.2580 5.6773 18 6 11.8199 -2.0243 6.7591 19 7 11.8129 -3.3406 6.7721 20 14 12.5770 -1.0803 8.1821 21 1 11.5382 -0.8171 9.2101 22 1 13.6738 -1.8828 8.7807 23 1 13.1211 0.2096 7.6867 24 6 9.3385 -1.4432 -1.2228 25 6 8.4860 -0.1813 -1.3774 26 7 2.2178 -1.0457 -0.0059 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9164 2.1190 -0.0004 31 1 6.0138 -0.0564 -0.0022 32 1 7.0045 -2.5877 -0.8472 33 1 7.0992 -2.4655 0.9260 34 1 8.8938 0.4195 1.2916 35 1 10.8836 -0.2485 3.0238 36 1 9.3076 -0.2309 3.8509 37 1 12.2007 -3.8203 7.5207 38 1 10.3983 -1.3113 -1.0049 39 1 9.0905 -2.2981 -1.8518 40 1 7.6775 -0.2067 -2.1081 41 1 8.9845 0.7810 -1.2613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759886590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:58 Heat of formation + Delta-G solvation = 55.603154 kcal Electronic energy + Delta-G solvation = -25754.415646 eV Core-core repulsion = 21799.129521 eV Total energy + Delta-G solvation = -3955.286124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.79154 -40.11843 -39.13094 -37.29019 -35.02521 -34.22099 -32.71968 -32.40744 -32.11706 -29.13689 -28.74973 -26.97237 -25.46780 -24.04775 -22.86217 -22.52561 -21.37054 -20.65367 -19.67704 -18.48468 -17.83586 -17.17415 -16.98075 -16.43457 -16.38699 -15.99383 -15.28066 -15.08785 -14.92678 -14.78839 -14.50367 -14.12916 -13.90143 -13.71685 -13.66363 -13.25713 -12.79654 -12.71288 -12.42372 -12.31337 -11.94677 -11.71464 -11.05723 -11.01323 -10.99978 -10.85417 -10.80449 -10.76940 -10.63232 -10.25929 -9.93837 -9.80023 -9.42988 -9.09007 -9.05278 -8.91881 -8.21356 -6.47725 -6.19751 -3.90171 1.08982 1.75166 1.78092 2.75966 2.93619 3.06775 3.19456 3.23643 3.27583 3.31705 3.55261 3.66928 3.79258 3.97141 4.21939 4.35199 4.37412 4.44716 4.63721 4.68003 4.75579 4.80023 5.11294 5.15341 5.39507 5.40395 5.51106 5.60796 5.71807 5.75701 5.89015 5.90780 5.93444 5.97595 6.06714 6.14898 6.23314 6.66360 7.24189 7.61152 7.66512 7.69264 8.03101 8.36883 8.61962 9.25424 10.87604 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.002255 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.970543 B =12414.644012 C =13534.852322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.306 5.306 3 C 0.191 3.809 4 N -0.485 5.485 5 C 0.145 3.855 6 C 0.613 3.387 7 O -0.515 6.515 8 N -0.704 5.704 9 C 0.150 3.850 10 C 0.089 3.911 11 N -0.709 5.709 12 C 0.535 3.465 13 O -0.505 6.505 14 C -0.153 4.153 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.157 4.157 25 C -0.168 4.168 26 N -0.252 5.252 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.227 0.773 31 H 0.409 0.591 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.378 14.675 -18.902 31.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.101 5.101 3 C -0.105 4.105 4 N -0.210 5.210 5 C -0.135 4.135 6 C 0.394 3.606 7 O -0.387 6.387 8 N -0.356 5.356 9 C 0.027 3.973 10 C 0.000 4.000 11 N -0.364 5.364 12 C 0.321 3.679 13 O -0.378 6.378 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.196 4.196 25 C -0.206 4.206 26 N -0.091 5.091 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.243 0.757 31 H 0.245 0.755 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.461 11.106 -19.061 30.089 hybrid contribution 0.309 3.345 1.295 3.600 sum -20.153 14.451 -17.766 30.506 Atomic orbital electron populations 1.22272 0.72102 1.06147 1.05048 1.47404 1.09417 1.03850 1.49442 1.26498 0.85845 0.96011 1.02116 1.71258 1.20485 1.09356 1.19942 1.23750 0.92193 0.89454 1.08054 1.16241 0.81017 0.85846 0.77467 1.90868 1.85525 1.13465 1.48824 1.45651 1.04404 1.11265 1.74305 1.21182 0.80231 0.91173 1.04750 1.20605 0.95599 1.02226 0.81520 1.45427 1.64709 1.09929 1.16328 1.20357 0.77257 0.86665 0.83615 1.90713 1.54863 1.15102 1.77136 1.23534 1.02763 1.06609 0.97455 1.85434 1.75058 1.04857 1.17750 1.22865 1.44361 0.94882 1.06289 0.90952 1.24996 0.95554 0.95055 0.98036 1.70024 1.42778 1.06139 1.31280 0.86166 0.78737 0.79412 0.81159 1.20294 1.20762 1.19717 1.23373 0.97795 0.98463 0.99926 1.23332 1.03384 0.96159 0.97749 1.74374 1.02863 1.13247 1.18603 0.89061 0.88058 0.87871 0.75671 0.75532 0.89830 0.88875 0.76416 0.89183 0.89271 0.92187 0.87780 0.87706 0.87611 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.16 11.38 59.85 0.68 0.84 16 2 N -0.31 -2.26 3.72 -69.39 -0.26 -2.52 16 3 C 0.19 1.24 12.62 -90.48 -1.14 0.10 16 4 N -0.48 -5.02 11.09 -12.37 -0.14 -5.16 16 5 C 0.15 1.90 7.96 -156.36 -1.24 0.66 16 6 C 0.61 9.10 7.83 -12.32 -0.10 9.01 16 7 O -0.51 -9.52 17.08 5.31 0.09 -9.43 16 8 N -0.70 -8.64 5.44 -61.24 -0.33 -8.98 16 9 C 0.15 2.04 5.63 -4.03 -0.02 2.01 16 10 C 0.09 1.04 1.79 -131.82 -0.24 0.80 16 11 N -0.71 -9.22 5.45 -47.61 -0.26 -9.48 16 12 C 0.53 9.84 7.66 -10.98 -0.08 9.75 16 13 O -0.51 -11.31 14.64 5.56 0.08 -11.23 16 14 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 16 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 20 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.16 -1.64 10.11 -26.70 -0.27 -1.91 16 25 C -0.17 -1.36 9.94 -26.70 -0.27 -1.63 16 26 N -0.25 -3.12 12.08 32.07 0.39 -2.73 16 27 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 30 H 0.23 0.23 8.06 -52.49 -0.42 -0.19 16 31 H 0.41 4.20 8.08 -40.82 -0.33 3.87 16 32 H 0.08 1.10 7.89 -51.93 -0.41 0.69 16 33 H 0.09 1.63 6.83 -51.93 -0.35 1.27 16 34 H 0.40 3.99 8.83 -40.82 -0.36 3.63 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -40.81 379.24 -8.70 -49.51 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.22 Total: 3.46 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.26 Total: 3.73 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.13 Total: -54.52 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.17 Total: -20.66 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -40.81 -8.70 -49.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759886590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.112 kcal (2) G-P(sol) polarization free energy of solvation -40.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds