Wall clock time and date at job start Sat Apr 11 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34581 * 125.74999 * 2 1 4 4 N 1.30875 * 107.62573 * 180.02562 * 3 2 1 5 5 C 1.34540 * 107.27046 * 0.02562 * 4 3 2 6 6 C 1.47872 * 126.05015 * 179.97438 * 5 4 3 7 7 O 1.21560 * 119.99914 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99730 * 0.02634 * 6 5 4 9 9 C 1.46505 * 119.99611 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.46831 * 174.96827 * 9 8 6 11 11 N 1.46495 * 115.54715 * 85.77478 * 10 9 8 12 12 C 1.34779 * 120.00375 * 65.40694 * 11 10 9 13 13 O 1.21283 * 119.99626 * 354.97760 * 12 11 10 14 14 C 1.50700 * 120.00262 * 174.97499 * 12 11 10 15 15 S 1.81006 * 109.46951 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99846 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00231 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00450 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47294 * 89.99398 * 20 18 16 22 22 H 1.48497 * 109.47047 * 210.00145 * 20 18 16 23 23 H 1.48502 * 109.46965 * 329.99758 * 20 18 16 24 24 C 1.52993 * 117.49722 * 231.44326 * 10 9 8 25 25 C 1.52997 * 117.49928 * 300.10289 * 10 9 8 26 26 N 1.28855 * 125.74994 * 180.32157 * 2 1 3 27 27 H 1.08998 * 109.47432 * 89.99809 * 1 2 3 28 28 H 1.09003 * 109.47353 * 209.99478 * 1 2 3 29 29 H 1.09002 * 109.47016 * 329.99438 * 1 2 3 30 30 H 1.07997 * 126.18721 * 359.97438 * 3 2 1 31 31 H 0.96999 * 120.00486 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47545 * 54.97056 * 9 8 6 33 33 H 1.08996 * 109.46839 * 294.96726 * 9 8 6 34 34 H 0.97002 * 119.99938 * 245.40447 * 11 10 9 35 35 H 1.08999 * 109.47302 * 300.00003 * 14 12 11 36 36 H 1.08998 * 109.46945 * 60.00407 * 14 12 11 37 37 H 0.97004 * 119.99765 * 180.02562 * 19 18 16 38 38 H 1.09005 * 117.49813 * 215.00448 * 24 10 9 39 39 H 1.08997 * 117.50305 * 0.02987 * 24 10 9 40 40 H 1.08999 * 117.49998 * 359.97438 * 25 10 9 41 41 H 1.09000 * 117.49970 * 144.97302 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 -0.0006 5 6 3.4750 -0.6601 -0.0015 6 6 4.6575 -1.5481 -0.0029 7 8 4.5113 -2.7549 -0.0041 8 7 5.8971 -1.0194 -0.0028 9 6 7.0686 -1.8991 -0.0048 10 6 8.3393 -1.0560 -0.1308 11 7 8.8801 -0.5364 1.1276 12 6 9.3586 -1.3866 2.0576 13 8 9.2589 -2.5840 1.8930 14 6 10.0177 -0.8493 3.3018 15 16 10.5509 -2.2285 4.3456 16 6 11.2645 -1.3380 5.6882 17 1 11.2706 -0.2580 5.6773 18 6 11.8199 -2.0243 6.7591 19 7 11.8129 -3.3406 6.7721 20 14 12.5770 -1.0803 8.1821 21 1 11.5382 -0.8171 9.2101 22 1 13.6738 -1.8828 8.7807 23 1 13.1211 0.2096 7.6867 24 6 9.3385 -1.4432 -1.2228 25 6 8.4860 -0.1813 -1.3774 26 7 2.2178 -1.0457 -0.0059 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9164 2.1190 -0.0004 31 1 6.0138 -0.0564 -0.0022 32 1 7.0045 -2.5877 -0.8472 33 1 7.0992 -2.4655 0.9260 34 1 8.8938 0.4195 1.2916 35 1 10.8836 -0.2485 3.0238 36 1 9.3076 -0.2309 3.8509 37 1 12.2007 -3.8203 7.5207 38 1 10.3983 -1.3113 -1.0049 39 1 9.0905 -2.2981 -1.8518 40 1 7.6775 -0.2067 -2.1081 41 1 8.9845 0.7810 -1.2613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759886590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:58 Heat of formation + Delta-G solvation = 23.138644 kcal Electronic energy + Delta-G solvation = -25755.823412 eV Core-core repulsion = 21799.129521 eV Total energy + Delta-G solvation = -3956.693891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.46104 -41.28196 -40.37954 -38.48597 -35.73476 -35.19359 -34.58769 -33.98699 -32.81046 -30.57303 -29.57865 -27.76910 -27.61387 -24.86102 -23.69383 -23.16634 -22.52376 -21.64234 -20.85606 -19.84596 -19.33225 -17.87437 -17.81910 -17.72108 -17.35368 -17.07436 -16.88141 -16.44763 -16.30519 -15.93108 -15.73260 -15.45537 -14.96190 -14.75544 -14.54281 -14.17661 -13.98112 -13.84190 -13.64581 -13.41792 -13.16430 -12.89562 -12.87472 -12.60855 -12.43423 -11.97662 -11.76983 -11.68358 -11.57266 -11.45760 -11.35777 -11.14476 -10.84683 -10.65336 -10.27008 -10.22558 -10.10155 -8.66599 -8.34581 -6.12683 0.25483 1.09704 1.24381 1.25560 1.42258 1.45922 1.56416 1.61191 1.93546 2.14306 2.19552 2.27611 2.75304 2.99426 3.07691 3.30171 3.45378 3.48137 3.77575 3.86260 3.89989 3.99672 4.30941 4.33885 4.40426 4.44568 4.50826 4.55955 4.69458 4.74366 4.77585 4.83099 4.99383 5.13343 5.20550 5.29263 5.41560 5.52587 5.64623 6.19677 6.26299 6.50819 6.88607 7.05245 7.06459 7.27242 8.74600 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.002255 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.970543 B =12414.644012 C =13534.852322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.300 5.300 3 C 0.209 3.791 4 N -0.504 5.504 5 C 0.117 3.883 6 C 0.607 3.393 7 O -0.567 6.567 8 N -0.685 5.685 9 C 0.158 3.842 10 C 0.062 3.938 11 N -0.682 5.682 12 C 0.536 3.464 13 O -0.554 6.554 14 C -0.128 4.128 15 S -0.153 6.153 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.256 1.256 24 C -0.167 4.167 25 C -0.121 4.121 26 N -0.289 5.289 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.145 0.855 30 H 0.284 0.716 31 H 0.421 0.579 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.420 0.580 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.271 0.729 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.452 19.437 -19.802 35.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.095 5.095 3 C -0.086 4.086 4 N -0.230 5.230 5 C -0.161 4.161 6 C 0.390 3.610 7 O -0.443 6.443 8 N -0.337 5.337 9 C 0.033 3.967 10 C -0.026 4.026 11 N -0.336 5.336 12 C 0.322 3.678 13 O -0.430 6.430 14 C -0.279 4.279 15 S 0.074 5.926 16 C -0.693 4.693 17 H 0.102 0.898 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.180 1.180 24 C -0.206 4.206 25 C -0.159 4.159 26 N -0.130 5.130 27 H 0.128 0.872 28 H 0.111 0.889 29 H 0.163 0.837 30 H 0.299 0.701 31 H 0.259 0.741 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.259 0.741 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.561 15.970 -19.998 33.464 hybrid contribution 0.452 1.960 1.450 2.479 sum -21.109 17.929 -18.547 33.332 Atomic orbital electron populations 1.22778 0.69070 1.07851 1.06805 1.47816 1.10948 1.02991 1.47766 1.27555 0.84491 0.97622 0.98928 1.71194 1.22912 1.07761 1.21137 1.23341 0.91726 0.90438 1.10628 1.16654 0.82190 0.85609 0.76506 1.90823 1.86401 1.15704 1.51357 1.45495 1.03465 1.11621 1.73133 1.20935 0.81780 0.91638 1.02323 1.20658 0.95223 1.05003 0.81697 1.45057 1.62580 1.10235 1.15720 1.20112 0.77325 0.86394 0.83969 1.90708 1.57003 1.17226 1.78104 1.23363 1.04069 1.03500 0.96989 1.85646 1.75958 1.10692 1.20301 1.23204 1.44258 0.95336 1.06476 0.89821 1.26164 0.95912 0.96040 1.01262 1.70198 1.43994 1.08243 1.32425 0.84934 0.77782 0.78215 0.76924 1.19398 1.20331 1.17997 1.23456 0.97416 1.00488 0.99217 1.23497 1.02325 0.95978 0.94060 1.74278 1.03267 1.15939 1.19540 0.87240 0.88872 0.83703 0.70128 0.74075 0.89906 0.93492 0.74140 0.86921 0.87458 0.92043 0.88302 0.87431 0.85853 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.07 11.38 127.77 1.45 1.52 16 2 N -0.30 -3.80 3.72 -373.46 -1.39 -5.19 16 3 C 0.21 2.01 12.62 180.30 2.27 4.29 16 4 N -0.50 -9.55 11.09 -193.04 -2.14 -11.69 16 5 C 0.12 3.10 7.96 137.13 1.09 4.19 16 6 C 0.61 18.96 7.83 86.80 0.68 19.64 16 7 O -0.57 -22.66 17.08 -3.90 -0.07 -22.73 16 8 N -0.68 -17.08 5.44 -465.93 -2.54 -19.61 16 9 C 0.16 4.45 5.63 86.38 0.49 4.94 16 10 C 0.06 1.39 1.79 3.60 0.01 1.40 16 11 N -0.68 -16.84 5.45 -422.93 -2.31 -19.14 16 12 C 0.54 19.89 7.66 87.66 0.67 20.56 16 13 O -0.55 -26.04 14.64 -3.04 -0.04 -26.08 16 14 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 15 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 16 C -0.54 -31.48 9.50 67.95 0.65 -30.83 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 18 C 0.01 0.62 5.49 84.86 0.47 1.09 16 19 N -0.91 -57.05 13.22 21.65 0.29 -56.77 16 20 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 24 C -0.17 -3.27 10.11 30.62 0.31 -2.96 16 25 C -0.12 -1.54 9.94 30.62 0.30 -1.24 16 26 N -0.29 -7.17 12.08 -52.44 -0.63 -7.80 16 27 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.14 -1.06 8.14 -2.39 -0.02 -1.08 16 30 H 0.28 -1.03 8.06 -2.91 -0.02 -1.06 16 31 H 0.42 8.18 8.08 -92.71 -0.75 7.43 16 32 H 0.08 2.32 7.89 -2.39 -0.02 2.30 16 33 H 0.05 1.79 6.83 -2.39 -0.02 1.77 16 34 H 0.42 7.13 8.83 -92.71 -0.82 6.31 16 35 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 36 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.94 16 38 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.11 2.03 8.05 -2.39 -0.02 2.02 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -97.71 379.24 0.39 -97.32 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -0.47 Total: 17.43 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 8.83 Total: 17.92 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -8.72 Total: -120.20 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.11 Total: -48.81 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -97.71 0.39 -97.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759886590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.462 kcal (2) G-P(sol) polarization free energy of solvation -97.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds