Wall clock time and date at job start Sat Apr 11 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 269.97797 * 15 14 13 17 17 S 1.65596 * 119.99835 * 164.99731 * 16 15 14 18 18 O 1.42104 * 104.27656 * 181.07360 * 17 16 15 19 19 O 1.42099 * 104.27702 * 308.92426 * 17 16 15 20 20 C 1.81397 * 104.44935 * 64.99804 * 17 16 15 21 21 C 1.53002 * 109.46885 * 179.97438 * 20 17 16 22 22 C 1.52999 * 109.47017 * 180.02562 * 21 20 17 23 23 C 1.53002 * 109.47017 * 179.97438 * 22 21 20 24 24 C 1.52992 * 117.50146 * 243.74504 * 23 22 21 25 25 C 1.53006 * 117.49726 * 175.08424 * 23 22 21 26 26 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 27 27 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 28 28 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 30 30 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 31 31 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 32 32 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 33 33 H 0.96994 * 120.00070 * 344.99548 * 16 15 14 34 34 H 1.08995 * 109.47576 * 299.99575 * 20 17 16 35 35 H 1.09004 * 109.47257 * 60.00550 * 20 17 16 36 36 H 1.08998 * 109.47574 * 300.00333 * 21 20 17 37 37 H 1.08998 * 109.47124 * 60.00020 * 21 20 17 38 38 H 1.08995 * 109.47448 * 299.99813 * 22 21 20 39 39 H 1.08998 * 109.47220 * 60.00002 * 22 21 20 40 40 H 1.08996 * 115.55024 * 29.42233 * 23 22 21 41 41 H 1.09004 * 117.49918 * 0.02562 * 24 23 22 42 42 H 1.09005 * 117.50463 * 145.02019 * 24 23 22 43 43 H 1.08998 * 117.49634 * 214.97752 * 25 23 22 44 44 H 1.09000 * 117.49929 * 0.02562 * 25 23 22 45 45 H 1.07998 * 120.03894 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 16 9.6651 -4.3176 1.0287 18 8 9.8891 -4.3094 2.4319 19 8 9.7587 -5.5211 0.2790 20 6 10.6080 -2.9923 0.2257 21 6 12.1031 -3.3056 0.3122 22 6 12.8985 -2.1874 -0.3646 23 6 14.3936 -2.5005 -0.2775 24 6 15.2707 -1.5401 0.5282 25 6 15.3564 -1.5560 -1.0001 26 6 5.3549 -2.4724 -0.2272 27 1 -0.4849 0.8401 -0.0004 28 1 2.1493 -3.5267 0.0145 29 1 3.2702 -5.7081 -0.1897 30 1 5.7197 -5.8204 -0.4050 31 1 7.7494 -4.6563 -1.0449 32 1 7.8421 -2.8801 -0.9753 33 1 7.5566 -3.6421 1.6510 34 1 10.3120 -2.9183 -0.8207 35 1 10.4057 -2.0464 0.7283 36 1 12.3990 -3.3794 1.3587 37 1 12.3058 -4.2515 -0.1901 38 1 12.6028 -2.1133 -1.4110 39 1 12.6958 -1.2418 0.1381 40 1 14.6516 -3.5592 -0.2520 41 1 14.7825 -0.6854 0.9966 42 1 16.1060 -1.9669 1.0835 43 1 16.2479 -1.9933 -1.4495 44 1 14.9246 -0.7114 -1.5371 45 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771886200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:12 Heat of formation + Delta-G solvation = -63.832016 kcal Electronic energy + Delta-G solvation = -25950.903105 eV Core-core repulsion = 22061.685475 eV Total energy + Delta-G solvation = -3889.217630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.36569 -38.25379 -37.36505 -37.10452 -36.09500 -34.90160 -34.57206 -32.45770 -30.57345 -29.35079 -28.30385 -25.76389 -24.99290 -22.96255 -22.64592 -21.86885 -20.95824 -20.81557 -19.44470 -18.05139 -17.72960 -17.30469 -16.62036 -16.47176 -15.97597 -15.56364 -15.33312 -15.00117 -14.74063 -14.67025 -14.29946 -13.91326 -13.64352 -13.41581 -13.09228 -12.96063 -12.86556 -12.72345 -12.40051 -12.29012 -12.22357 -12.12318 -12.02850 -11.97136 -11.65776 -11.49604 -11.40416 -11.11489 -10.93604 -10.85171 -10.79900 -10.53404 -10.31224 -10.23944 -9.58701 -9.45930 -8.94924 -8.35611 -7.49480 -6.48059 -4.15452 0.06379 1.80647 2.14304 2.69645 3.16708 3.20238 3.33892 3.34274 3.56747 3.96302 4.04689 4.17134 4.32943 4.36422 4.42689 4.48850 4.53569 4.61856 4.75875 4.89504 4.96765 5.02582 5.08507 5.20214 5.21855 5.26335 5.28702 5.46188 5.48705 5.56090 5.56806 5.63216 5.69573 5.73435 5.82711 5.86895 6.00430 6.13023 6.39917 6.65728 6.87792 6.99649 7.09955 7.19667 7.48399 7.71619 7.95818 8.86721 9.47507 10.59431 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.002256 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.708444 B =12410.781704 C =13985.996701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.155 3.845 11 C -0.212 4.212 12 C -0.077 4.077 13 C -0.184 4.184 14 C -0.067 4.067 15 C 0.162 3.838 16 N -1.113 6.113 17 S 2.612 3.388 18 O -0.960 6.960 19 O -0.956 6.956 20 C -0.633 4.633 21 C -0.109 4.109 22 C -0.082 4.082 23 C -0.158 4.158 24 C -0.182 4.182 25 C -0.181 4.181 26 C -0.175 4.175 27 H 0.280 0.720 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.422 0.578 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.364 -4.585 -1.597 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.103 3.897 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.204 4.204 14 C -0.069 4.069 15 C 0.037 3.963 16 N -0.873 5.873 17 S 2.704 3.296 18 O -0.950 6.950 19 O -0.946 6.946 20 C -0.762 4.762 21 C -0.148 4.148 22 C -0.120 4.120 23 C -0.176 4.176 24 C -0.219 4.219 25 C -0.218 4.218 26 C -0.195 4.195 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.257 0.743 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 25.649 -5.042 -1.319 26.173 hybrid contribution -0.261 1.474 -0.065 1.498 sum 25.388 -3.568 -1.383 25.675 Atomic orbital electron populations 1.69644 1.05576 1.28567 1.47708 1.24477 0.95041 0.98871 0.95633 0.86168 0.80290 0.81404 0.78931 1.19885 1.20761 1.18404 1.20757 0.76790 0.96654 1.52444 0.87605 1.83566 1.22684 1.25562 1.80332 1.19057 0.91595 0.85627 0.93384 1.21376 1.01338 0.91944 1.08452 1.20825 0.94202 0.96875 0.97665 1.20600 0.93856 0.96966 1.08985 1.19127 0.93011 0.92986 1.01745 1.20175 0.91324 1.01964 0.82847 1.55611 1.29313 1.87599 1.14769 1.04900 0.73847 0.76166 0.74638 1.93608 1.84662 1.87292 1.29435 1.93599 1.85636 1.41386 1.74003 1.30666 1.09346 1.20893 1.15296 1.21300 0.90145 1.00474 1.02880 1.21140 0.91633 0.98068 1.01166 1.22387 0.92617 0.97180 1.05446 1.23078 1.02694 1.02046 0.94053 1.22985 1.01590 1.02333 0.94930 1.20048 0.91996 0.97133 1.10359 0.90982 0.84839 0.86923 0.87032 0.89602 0.91287 0.74307 0.84828 0.84689 0.90160 0.90176 0.90962 0.91251 0.87539 0.88678 0.88824 0.88799 0.88735 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.77 13.96 55.48 0.77 -24.00 16 2 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 3 Si 0.91 21.02 28.62 -169.99 -4.86 16.15 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -10.66 9.95 30.89 0.31 -10.35 16 8 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 9 O -0.22 -5.45 8.59 0.05 0.00 -5.45 16 10 C 0.16 3.38 6.65 -39.11 -0.26 3.12 16 11 C -0.21 -4.33 9.17 -39.40 -0.36 -4.69 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.18 -2.89 9.70 -39.54 -0.38 -3.27 16 14 C -0.07 -1.01 5.27 -104.65 -0.55 -1.56 16 15 C 0.16 1.82 6.25 -5.19 -0.03 1.79 16 16 N -1.11 -11.82 5.88 -11.65 -0.07 -11.89 16 17 S 2.61 26.50 5.46 -107.50 -0.59 25.92 16 18 O -0.96 -12.85 18.08 -57.54 -1.04 -13.89 16 19 O -0.96 -12.58 17.50 -57.54 -1.01 -13.59 16 20 C -0.63 -4.20 6.07 37.16 0.23 -3.98 16 21 C -0.11 -0.74 5.18 -26.73 -0.14 -0.88 16 22 C -0.08 -0.50 5.50 -26.73 -0.15 -0.65 16 23 C -0.16 -0.98 5.73 -90.62 -0.52 -1.50 16 24 C -0.18 -1.08 10.18 -26.70 -0.27 -1.35 16 25 C -0.18 -1.05 10.26 -26.69 -0.27 -1.32 16 26 C -0.18 -3.13 9.65 -39.39 -0.38 -3.51 16 27 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.09 0.90 7.64 -51.93 -0.40 0.50 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.42 4.56 8.61 -34.47 -0.30 4.27 16 34 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 40 H 0.11 0.62 8.08 -51.93 -0.42 0.20 16 41 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -33.27 391.49 -10.90 -44.17 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.73 Total: 4.94 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -3.28 Total: -28.26 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.71 Total: -35.89 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -2.05 Total: -32.93 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.86 Total: 16.15 kcal Atomic # 16 Polarization: 26.50 SS G_CDS: -0.59 Total: 25.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.27 -10.90 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771886200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.665 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds