Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46498 * 120.00081 * 274.99878 * 4 3 2 6 6 C 1.50695 * 109.46892 * 85.00189 * 5 4 3 7 7 H 1.08007 * 120.00446 * 359.97438 * 6 5 4 8 8 C 1.37886 * 120.00095 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99549 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00142 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47315 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47303 * 120.00107 * 10 8 6 13 13 H 1.48502 * 109.46938 * 240.00191 * 10 8 6 14 14 S 1.65599 * 119.99913 * 95.00113 * 4 3 2 15 15 O 1.42092 * 106.40565 * 203.53762 * 14 4 3 16 16 O 1.42106 * 106.40075 * 336.45983 * 14 4 3 17 17 C 1.76206 * 107.21692 * 89.99694 * 14 4 3 18 18 C 1.38268 * 119.94319 * 269.72537 * 17 14 4 19 19 C 1.38142 * 120.05041 * 179.72727 * 18 17 14 20 20 C 1.50699 * 120.02779 * 180.27641 * 19 18 17 21 21 C 1.38729 * 119.94860 * 0.54905 * 19 18 17 22 22 O 1.35901 * 120.06116 * 179.75090 * 21 19 18 23 23 C 1.42903 * 116.99779 * 269.97690 * 22 21 19 24 24 C 1.38739 * 119.88483 * 359.72422 * 21 19 18 25 25 C 1.50706 * 120.02665 * 179.97438 * 24 21 19 26 26 C 1.38142 * 119.94557 * 0.02562 * 24 21 19 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 31 31 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 32 32 H 1.08998 * 109.46964 * 205.00281 * 5 4 3 33 33 H 1.08997 * 109.47202 * 325.00323 * 5 4 3 34 34 H 0.96998 * 119.99280 * 179.97438 * 9 8 6 35 35 H 1.07998 * 119.97348 * 0.02562 * 18 17 14 36 36 H 1.09004 * 109.47299 * 270.27508 * 20 19 18 37 37 H 1.09003 * 109.47263 * 30.27294 * 20 19 18 38 38 H 1.09002 * 109.47695 * 150.27270 * 20 19 18 39 39 H 1.09000 * 109.46853 * 60.00047 * 23 22 21 40 40 H 1.08996 * 109.47079 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47186 * 300.00147 * 23 22 21 42 42 H 1.09001 * 109.47127 * 270.02336 * 25 24 21 43 43 H 1.09000 * 109.46935 * 30.02653 * 25 24 21 44 44 H 1.09000 * 109.47026 * 150.02300 * 25 24 21 45 45 H 1.07995 * 119.97148 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5284 1.7621 2.4523 6 6 1.9117 0.5914 3.1734 7 1 1.8701 -0.3763 2.6955 8 6 1.4005 0.7555 4.4435 9 7 1.4507 1.9340 5.0253 10 14 0.6367 -0.6958 5.3376 11 1 0.7025 -1.9008 4.4722 12 1 1.3815 -0.9490 6.5971 13 1 -0.7819 -0.3913 5.6541 14 16 4.5712 0.8759 0.9174 15 8 5.0503 0.4764 2.1941 16 8 4.5923 0.0262 -0.2215 17 6 5.4768 2.3217 0.4762 18 6 5.6167 2.6691 -0.8548 19 6 6.3214 3.8051 -1.2028 20 6 6.4683 4.1866 -2.6533 21 6 6.8985 4.5915 -0.2164 22 8 7.5965 5.7069 -0.5565 23 6 8.9970 5.5489 -0.7923 24 6 6.7614 4.2377 1.1181 25 6 7.3875 5.0893 2.1923 26 6 6.0514 3.1035 1.4613 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.3722 2.1407 3.0292 33 1 1.7845 2.5503 2.3365 34 1 1.0907 2.0495 5.9185 35 1 5.1707 2.0544 -1.6226 36 1 7.3649 3.7210 -3.0625 37 1 5.5953 3.8445 -3.2092 38 1 6.5509 5.2702 -2.7375 39 1 9.1506 4.8461 -1.6113 40 1 9.4323 6.5130 -1.0550 41 1 9.4765 5.1668 0.1090 42 1 8.3996 4.7369 2.3915 43 1 7.4228 6.1265 1.8591 44 1 6.7929 5.0204 3.1032 45 1 5.9440 2.8279 2.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292685949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -66.180699 kcal Electronic energy + Delta-G solvation = -28221.980123 eV Core-core repulsion = 24332.660647 eV Total energy + Delta-G solvation = -3889.319476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.39954 -37.47398 -36.71602 -36.31995 -35.19608 -33.74093 -33.00955 -31.84475 -31.49793 -28.26590 -27.50077 -26.84097 -26.41678 -24.83144 -22.61900 -22.22060 -21.15365 -19.56474 -18.28143 -17.86395 -16.91490 -16.84866 -16.71750 -16.21534 -15.90046 -15.50317 -14.50499 -14.39782 -14.17027 -14.09120 -13.78556 -13.61153 -13.35205 -13.30620 -13.12096 -13.02007 -12.53849 -12.31015 -12.29494 -12.08780 -11.98225 -11.69335 -11.68461 -11.55980 -11.42757 -11.21465 -11.11918 -10.86085 -10.65225 -10.55033 -10.40593 -10.17757 -10.02689 -9.66913 -8.92270 -8.82483 -8.71913 -8.39755 -8.10286 -6.03065 -4.05123 0.61782 1.03470 1.21166 2.85372 3.05008 3.33352 3.40972 3.46342 3.63376 3.80774 4.33947 4.48188 4.52548 4.58486 4.91186 4.99055 5.02133 5.13575 5.17879 5.25853 5.27612 5.31017 5.38684 5.40810 5.44655 5.48968 5.56375 5.59383 5.69455 5.76989 5.92062 6.07728 6.08996 6.13981 6.15223 6.32308 6.42286 6.45617 6.58086 7.16831 7.17527 7.27007 7.29629 7.41071 7.60215 7.95096 8.23127 8.97240 9.59296 11.05988 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.003854 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.241647 B = 7262.750473 C = 8305.811774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.161 3.839 4 N -0.978 5.978 5 C 0.256 3.744 6 C -0.518 4.518 7 H 0.063 0.937 8 C 0.062 3.938 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.285 1.285 14 S 2.684 3.316 15 O -0.940 6.940 16 O -0.973 6.973 17 C -0.670 4.670 18 C -0.018 4.018 19 C -0.125 4.125 20 C -0.110 4.110 21 C 0.136 3.864 22 O -0.335 6.335 23 C 0.037 3.963 24 C -0.121 4.121 25 C -0.113 4.113 26 C -0.008 4.008 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.142 0.858 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 7.375 -13.423 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.168 4.168 3 C 0.035 3.965 4 N -0.817 5.817 5 C 0.134 3.866 6 C -0.557 4.557 7 H 0.082 0.918 8 C -0.140 4.140 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.211 1.211 14 S 2.772 3.228 15 O -0.930 6.930 16 O -0.963 6.963 17 C -0.754 4.754 18 C -0.037 4.037 19 C -0.127 4.127 20 C -0.167 4.167 21 C 0.093 3.907 22 O -0.252 6.252 23 C -0.057 4.057 24 C -0.122 4.122 25 C -0.170 4.170 26 C -0.028 4.028 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.159 0.841 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.116 6.879 -13.182 18.565 hybrid contribution -0.262 -0.186 0.590 0.672 sum 10.854 6.693 -12.592 17.921 Atomic orbital electron populations 1.23609 0.95734 1.01211 1.01724 1.23200 0.96219 0.98818 0.98554 1.20199 0.92650 0.96078 0.87599 1.57490 1.23291 1.83407 1.17517 1.19144 0.95949 0.95983 0.75501 1.21498 1.38010 0.96263 0.99961 0.91843 1.24901 0.96059 0.95887 0.97146 1.69931 1.46570 1.22262 1.14963 0.86497 0.78665 0.82872 0.79771 1.19644 1.20917 1.21072 1.02321 0.73101 0.73963 0.73446 1.93602 1.79866 1.79611 1.39940 1.93511 1.86994 1.62926 1.52871 1.31547 1.18081 1.25107 1.00686 1.20685 0.94343 0.94303 0.94405 1.20219 1.00976 0.95200 0.96265 1.20700 1.02473 1.02505 0.91018 1.18536 0.94316 0.86676 0.91216 1.85931 1.20920 1.29380 1.88974 1.22982 0.79339 1.03015 1.00394 1.20287 1.01033 0.96676 0.94196 1.20735 1.00407 0.99092 0.96736 1.20830 0.91227 0.91182 0.99525 0.89094 0.88808 0.87584 0.90242 0.90924 0.94299 0.94527 0.92854 0.84070 0.91369 0.91005 0.90813 0.93424 0.88647 0.93319 0.91285 0.90811 0.90566 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 14.32 29.01 0.42 -2.58 16 2 C -0.15 -2.64 8.94 -36.03 -0.32 -2.96 16 3 C 0.16 2.77 5.81 -5.19 -0.03 2.74 16 4 N -0.98 -19.95 2.79 -116.95 -0.33 -20.28 16 5 C 0.26 6.25 5.12 -5.20 -0.03 6.22 16 6 C -0.52 -14.18 8.95 -34.44 -0.31 -14.49 16 7 H 0.06 1.75 7.35 -52.48 -0.39 1.37 16 8 C 0.06 1.73 5.46 -17.81 -0.10 1.63 16 9 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 S 2.68 53.16 5.59 -107.50 -0.60 52.56 16 15 O -0.94 -21.94 16.25 -57.17 -0.93 -22.87 16 16 O -0.97 -19.50 16.24 -57.17 -0.93 -20.43 16 17 C -0.67 -11.24 5.98 -39.56 -0.24 -11.47 16 18 C -0.02 -0.26 9.17 -39.61 -0.36 -0.63 16 19 C -0.13 -1.64 5.89 -104.48 -0.62 -2.26 16 20 C -0.11 -1.07 9.79 36.01 0.35 -0.72 16 21 C 0.14 1.83 5.67 -39.22 -0.22 1.61 16 22 O -0.34 -3.89 8.51 -19.43 -0.17 -4.06 16 23 C 0.04 0.29 11.13 101.05 1.12 1.42 16 24 C -0.12 -1.71 5.89 -104.47 -0.62 -2.33 16 25 C -0.11 -1.29 9.79 36.01 0.35 -0.94 16 26 C -0.01 -0.14 9.17 -39.61 -0.36 -0.50 16 27 H 0.09 1.35 8.06 -52.48 -0.42 0.93 16 28 H 0.09 1.42 7.84 -52.49 -0.41 1.00 16 29 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.08 1.27 7.65 -51.93 -0.40 0.88 16 31 H 0.07 1.05 7.61 -51.93 -0.40 0.66 16 32 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 33 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.14 1.82 7.61 -52.49 -0.40 1.42 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.79 7.53 -51.93 -0.39 0.39 16 44 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 45 H 0.15 2.42 7.61 -52.49 -0.40 2.02 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -33.18 392.27 -9.19 -42.37 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.92 Total: 0.39 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -0.96 Total: -25.25 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.41 Total: -45.41 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -2.02 Total: -47.36 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.60 Total: 52.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.18 -9.19 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292685949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.806 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds