Wall clock time and date at job start Sat Apr 11 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46498 * 120.00081 * 274.99878 * 4 3 2 6 6 C 1.50695 * 109.46892 * 85.00189 * 5 4 3 7 7 H 1.08007 * 120.00446 * 359.97438 * 6 5 4 8 8 C 1.37886 * 120.00095 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99549 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00142 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47315 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47303 * 120.00107 * 10 8 6 13 13 H 1.48502 * 109.46938 * 240.00191 * 10 8 6 14 14 S 1.65599 * 119.99913 * 95.00113 * 4 3 2 15 15 O 1.42092 * 106.40565 * 203.53762 * 14 4 3 16 16 O 1.42106 * 106.40075 * 336.45983 * 14 4 3 17 17 C 1.76206 * 107.21692 * 89.99694 * 14 4 3 18 18 C 1.38268 * 119.94319 * 269.72537 * 17 14 4 19 19 C 1.38142 * 120.05041 * 179.72727 * 18 17 14 20 20 C 1.50699 * 120.02779 * 180.27641 * 19 18 17 21 21 C 1.38729 * 119.94860 * 0.54905 * 19 18 17 22 22 O 1.35901 * 120.06116 * 179.75090 * 21 19 18 23 23 C 1.42903 * 116.99779 * 269.97690 * 22 21 19 24 24 C 1.38739 * 119.88483 * 359.72422 * 21 19 18 25 25 C 1.50706 * 120.02665 * 179.97438 * 24 21 19 26 26 C 1.38142 * 119.94557 * 0.02562 * 24 21 19 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 31 31 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 32 32 H 1.08998 * 109.46964 * 205.00281 * 5 4 3 33 33 H 1.08997 * 109.47202 * 325.00323 * 5 4 3 34 34 H 0.96998 * 119.99280 * 179.97438 * 9 8 6 35 35 H 1.07998 * 119.97348 * 0.02562 * 18 17 14 36 36 H 1.09004 * 109.47299 * 270.27508 * 20 19 18 37 37 H 1.09003 * 109.47263 * 30.27294 * 20 19 18 38 38 H 1.09002 * 109.47695 * 150.27270 * 20 19 18 39 39 H 1.09000 * 109.46853 * 60.00047 * 23 22 21 40 40 H 1.08996 * 109.47079 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47186 * 300.00147 * 23 22 21 42 42 H 1.09001 * 109.47127 * 270.02336 * 25 24 21 43 43 H 1.09000 * 109.46935 * 30.02653 * 25 24 21 44 44 H 1.09000 * 109.47026 * 150.02300 * 25 24 21 45 45 H 1.07995 * 119.97148 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5284 1.7621 2.4523 6 6 1.9117 0.5914 3.1734 7 1 1.8701 -0.3763 2.6955 8 6 1.4005 0.7555 4.4435 9 7 1.4507 1.9340 5.0253 10 14 0.6367 -0.6958 5.3376 11 1 0.7025 -1.9008 4.4722 12 1 1.3815 -0.9490 6.5971 13 1 -0.7819 -0.3913 5.6541 14 16 4.5712 0.8759 0.9174 15 8 5.0503 0.4764 2.1941 16 8 4.5923 0.0262 -0.2215 17 6 5.4768 2.3217 0.4762 18 6 5.6167 2.6691 -0.8548 19 6 6.3214 3.8051 -1.2028 20 6 6.4683 4.1866 -2.6533 21 6 6.8985 4.5915 -0.2164 22 8 7.5965 5.7069 -0.5565 23 6 8.9970 5.5489 -0.7923 24 6 6.7614 4.2377 1.1181 25 6 7.3875 5.0893 2.1923 26 6 6.0514 3.1035 1.4613 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 3.3722 2.1407 3.0292 33 1 1.7845 2.5503 2.3365 34 1 1.0907 2.0495 5.9185 35 1 5.1707 2.0544 -1.6226 36 1 7.3649 3.7210 -3.0625 37 1 5.5953 3.8445 -3.2092 38 1 6.5509 5.2702 -2.7375 39 1 9.1506 4.8461 -1.6113 40 1 9.4323 6.5130 -1.0550 41 1 9.4765 5.1668 0.1090 42 1 8.3996 4.7369 2.3915 43 1 7.4228 6.1265 1.8591 44 1 6.7929 5.0204 3.1032 45 1 5.9440 2.8279 2.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292685949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:09 Heat of formation + Delta-G solvation = -86.850512 kcal Electronic energy + Delta-G solvation = -28222.876433 eV Core-core repulsion = 24332.660647 eV Total energy + Delta-G solvation = -3890.215787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41054 -38.45556 -38.33778 -37.92488 -36.85942 -34.89157 -34.73766 -33.52018 -32.56633 -29.37181 -29.04173 -27.87932 -27.23830 -26.46455 -24.24898 -23.64903 -22.17374 -20.96728 -19.76364 -18.87054 -18.64693 -18.36874 -17.96735 -17.88982 -17.11359 -16.73430 -16.30953 -15.87881 -15.20205 -15.08943 -14.97162 -14.73738 -14.67150 -14.43209 -14.25791 -14.17434 -14.11316 -13.92325 -13.34607 -13.33821 -13.12565 -13.04343 -12.96084 -12.94175 -12.92870 -12.60000 -12.55996 -12.53364 -12.30773 -12.28893 -11.98300 -11.72460 -11.56248 -11.03915 -10.56915 -10.17991 -10.02234 -9.80450 -9.78420 -8.15704 -6.24233 -0.67327 -0.36446 0.10392 1.39183 1.41829 1.49248 1.53136 1.92961 2.31178 2.44526 2.67013 2.85053 3.16083 3.26749 3.61434 3.68739 3.92715 4.05390 4.17682 4.19872 4.21239 4.39759 4.42537 4.44040 4.48599 4.52431 4.66254 4.68285 4.73794 4.77126 4.78746 4.90793 4.96991 5.04874 5.12369 5.12530 5.22039 5.23979 5.28381 5.44346 5.52266 5.72535 5.83045 5.84705 6.06896 6.15780 6.35186 6.83101 7.43089 8.92732 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.003854 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.241647 B = 7262.750473 C = 8305.811774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.176 4.176 3 C 0.152 3.848 4 N -0.983 5.983 5 C 0.271 3.729 6 C -0.529 4.529 7 H 0.055 0.945 8 C 0.013 3.987 9 N -0.926 5.926 10 Si 0.949 3.051 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.272 1.272 14 S 2.691 3.309 15 O -0.987 6.987 16 O -0.980 6.980 17 C -0.676 4.676 18 C -0.024 4.024 19 C -0.123 4.123 20 C -0.109 4.109 21 C 0.142 3.858 22 O -0.341 6.341 23 C 0.028 3.972 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.032 4.032 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.018 0.982 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.158 0.842 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.122 0.878 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.377 8.452 -15.358 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C 0.027 3.973 4 N -0.821 5.821 5 C 0.148 3.852 6 C -0.569 4.569 7 H 0.073 0.927 8 C -0.185 4.185 9 N -0.567 5.567 10 Si 0.775 3.225 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.197 1.197 14 S 2.784 3.216 15 O -0.978 6.978 16 O -0.970 6.970 17 C -0.765 4.765 18 C -0.043 4.043 19 C -0.124 4.124 20 C -0.166 4.166 21 C 0.098 3.902 22 O -0.258 6.258 23 C -0.065 4.065 24 C -0.128 4.128 25 C -0.168 4.168 26 C -0.051 4.051 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.175 0.825 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.611 7.912 -15.128 20.646 hybrid contribution -0.313 -0.408 1.078 1.194 sum 11.298 7.504 -14.050 19.528 Atomic orbital electron populations 1.23858 0.95278 1.02507 0.99292 1.23235 0.96979 0.98558 1.00839 1.20492 0.92890 0.96346 0.87523 1.57339 1.24302 1.83476 1.16969 1.18695 0.94650 0.94789 0.77097 1.21776 1.37931 0.96697 1.00462 0.92689 1.25646 0.96684 0.98241 0.97979 1.70018 1.47453 1.23819 1.15386 0.85633 0.78386 0.79984 0.78492 1.19476 1.20776 1.19743 1.01666 0.72842 0.74602 0.72463 1.93535 1.80564 1.81324 1.42353 1.93485 1.87063 1.64066 1.52415 1.30905 1.19297 1.24199 1.02099 1.20925 0.94624 0.95217 0.93532 1.20592 0.99498 0.94139 0.98198 1.20805 1.04026 1.03128 0.88606 1.18675 0.93909 0.86736 0.90903 1.85915 1.22693 1.28342 1.88873 1.23290 0.77167 1.05041 1.01000 1.20535 1.00517 0.96117 0.95633 1.20791 1.01052 0.99225 0.95771 1.20812 0.92867 0.92598 0.98826 0.87758 0.87522 0.88949 0.89024 0.88147 0.96409 0.95252 0.92605 0.82470 0.89478 0.89663 0.90121 0.92468 0.85959 0.92993 0.89506 0.89699 0.91059 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.36 14.32 67.78 0.97 -4.39 16 2 C -0.18 -6.25 8.94 25.65 0.23 -6.02 16 3 C 0.15 5.21 5.81 85.63 0.50 5.71 16 4 N -0.98 -41.13 2.79 -523.91 -1.46 -42.59 16 5 C 0.27 13.73 5.12 85.63 0.44 14.17 16 6 C -0.53 -29.70 8.95 25.60 0.23 -29.47 16 7 H 0.05 3.11 7.35 -2.91 -0.02 3.09 16 8 C 0.01 0.76 5.46 84.66 0.46 1.22 16 9 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 10 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 S 2.69 110.25 5.59 -56.49 -0.32 109.93 16 15 O -0.99 -48.76 16.25 -128.00 -2.08 -50.84 16 16 O -0.98 -39.78 16.24 -128.00 -2.08 -41.86 16 17 C -0.68 -23.01 5.98 22.28 0.13 -22.88 16 18 C -0.02 -0.66 9.17 22.25 0.20 -0.46 16 19 C -0.12 -2.94 5.89 -19.77 -0.12 -3.06 16 20 C -0.11 -1.74 9.79 71.24 0.70 -1.05 16 21 C 0.14 3.55 5.67 22.51 0.13 3.67 16 22 O -0.34 -6.94 8.51 -92.43 -0.79 -7.72 16 23 C 0.03 0.36 11.13 113.37 1.26 1.62 16 24 C -0.13 -3.52 5.89 -19.77 -0.12 -3.64 16 25 C -0.11 -2.46 9.79 71.24 0.70 -1.76 16 26 C -0.03 -1.06 9.17 22.25 0.20 -0.85 16 27 H 0.10 2.94 8.06 -2.91 -0.02 2.91 16 28 H 0.11 3.04 7.84 -2.91 -0.02 3.01 16 29 H 0.09 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.09 2.88 7.65 -2.38 -0.02 2.86 16 31 H 0.10 2.81 7.61 -2.39 -0.02 2.79 16 32 H 0.02 0.98 7.61 -2.39 -0.02 0.96 16 33 H 0.03 1.52 8.00 -2.39 -0.02 1.50 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.16 3.76 7.61 -2.91 -0.02 3.74 16 36 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.08 1.21 7.53 -2.39 -0.02 1.19 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.66 7.53 -2.39 -0.02 1.64 16 44 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 45 H 0.13 4.69 7.61 -2.91 -0.02 4.67 16 Total: -1.00 -72.53 392.27 2.48 -70.05 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.97 Total: 17.20 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 5.92 Total: -47.18 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -1.17 Total: -96.64 kcal Atomic # 8 Polarization: -95.48 SS G_CDS: -4.95 Total: -100.42 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 110.25 SS G_CDS: -0.32 Total: 109.93 kcal Total: -72.53 2.48 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292685949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.802 kcal (2) G-P(sol) polarization free energy of solvation -72.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds