Wall clock time and date at job start Sat Apr 11 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00301 * 2 1 4 4 N 1.46503 * 109.47096 * 124.99670 * 3 2 1 5 5 C 1.46502 * 119.99867 * 274.99639 * 4 3 2 6 6 C 1.50695 * 109.47126 * 274.29463 * 5 4 3 7 7 H 1.08000 * 120.00127 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00041 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00411 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47380 * 89.99788 * 10 8 6 12 12 H 1.48497 * 109.47181 * 210.00197 * 10 8 6 13 13 H 1.48509 * 109.46619 * 329.99942 * 10 8 6 14 14 S 1.65594 * 119.99932 * 95.00513 * 4 3 2 15 15 O 1.42103 * 106.40467 * 151.48281 * 14 4 3 16 16 O 1.42106 * 106.40539 * 18.55561 * 14 4 3 17 17 C 1.76204 * 107.21684 * 265.01762 * 14 4 3 18 18 C 1.38283 * 119.94266 * 345.38545 * 17 14 4 19 19 C 1.38127 * 120.05696 * 179.97438 * 18 17 14 20 20 C 1.50703 * 120.02918 * 180.02562 * 19 18 17 21 21 C 1.38749 * 119.94231 * 0.02562 * 19 18 17 22 22 O 1.35902 * 120.05723 * 179.97438 * 21 19 18 23 23 C 1.42901 * 117.00265 * 179.97438 * 22 21 19 24 24 C 1.38710 * 119.88896 * 359.97438 * 21 19 18 25 25 C 1.38163 * 119.94614 * 0.02562 * 24 21 19 26 26 C 1.50697 * 119.97610 * 179.97438 * 25 24 21 27 27 H 1.07998 * 119.99752 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99921 * 179.97438 * 1 2 3 29 29 H 1.08010 * 120.00054 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46801 * 4.99687 * 3 2 1 31 31 H 1.08998 * 109.46930 * 244.99525 * 3 2 1 32 32 H 1.09005 * 109.46968 * 34.29683 * 5 4 3 33 33 H 1.09004 * 109.46795 * 154.29420 * 5 4 3 34 34 H 0.96993 * 120.00602 * 180.02562 * 9 8 6 35 35 H 1.07998 * 119.97538 * 0.26928 * 18 17 14 36 36 H 1.08995 * 109.46763 * 90.00014 * 20 19 18 37 37 H 1.08997 * 109.46947 * 210.00237 * 20 19 18 38 38 H 1.08995 * 109.47206 * 330.00221 * 20 19 18 39 39 H 1.09002 * 109.46849 * 59.99817 * 23 22 21 40 40 H 1.09000 * 109.47219 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.46620 * 299.99905 * 23 22 21 42 42 H 1.08003 * 120.02616 * 179.97438 * 24 21 19 43 43 H 1.09004 * 109.47063 * 89.03738 * 26 25 24 44 44 H 1.08996 * 109.47416 * 209.03768 * 26 25 24 45 45 H 1.09005 * 109.47088 * 329.04105 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5284 1.7622 2.4523 6 6 2.6155 3.2634 2.5510 7 1 2.9806 3.8394 1.7136 8 6 2.2292 3.9016 3.7105 9 7 1.7851 3.2001 4.7306 10 14 2.3365 5.7625 3.8328 11 1 1.0594 6.3634 3.3709 12 1 2.5851 6.1523 5.2440 13 1 3.4503 6.2511 2.9807 14 16 4.5713 0.8759 0.9174 15 8 5.3310 1.5956 1.8787 16 8 4.8222 0.9423 -0.4797 17 6 4.6877 -0.8248 1.3635 18 6 3.6623 -1.4245 2.0713 19 6 3.7508 -2.7576 2.4218 20 6 2.6327 -3.4107 3.1927 21 6 4.8702 -3.4950 2.0634 22 8 4.9600 -4.8067 2.4074 23 6 6.1407 -5.5037 2.0046 24 6 5.8975 -2.8911 1.3533 25 6 5.8041 -1.5573 1.0052 26 6 6.9199 -0.9004 0.2343 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 1.4942 1.4482 2.5932 33 1 3.1535 1.3105 3.2227 34 1 1.5129 3.6490 5.5462 35 1 2.7892 -0.8513 2.3463 36 1 1.9076 -3.8304 2.4955 37 1 3.0385 -4.2061 3.8177 38 1 2.1432 -2.6677 3.8224 39 1 7.0142 -5.0244 2.4468 40 1 6.0843 -6.5388 2.3414 41 1 6.2240 -5.4795 0.9181 42 1 6.7700 -3.4629 1.0736 43 1 6.7422 -1.0193 -0.8346 44 1 6.9563 0.1607 0.4808 45 1 7.8685 -1.3676 0.4990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292790694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:18 Heat of formation + Delta-G solvation = -65.904794 kcal Electronic energy + Delta-G solvation = -28649.387882 eV Core-core repulsion = 24760.080370 eV Total energy + Delta-G solvation = -3889.307512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.44339 -37.81406 -36.59961 -36.41422 -35.23375 -33.86707 -33.19612 -31.89615 -30.47400 -29.32186 -27.83596 -27.48086 -24.94326 -24.84984 -22.71282 -22.30798 -21.51038 -19.66855 -18.24492 -17.69286 -17.17667 -16.88777 -16.24553 -16.09272 -16.01948 -15.69803 -14.64500 -14.57462 -14.41626 -14.14816 -13.88259 -13.60176 -13.36221 -13.26588 -13.06479 -12.96706 -12.62844 -12.38741 -12.11270 -12.00820 -11.94092 -11.87482 -11.66204 -11.39817 -11.27789 -11.15449 -11.09065 -11.02914 -10.87565 -10.67881 -10.52871 -10.29848 -9.99799 -9.75214 -9.11060 -8.84120 -8.43249 -8.34240 -8.14132 -6.05183 -4.08672 0.98412 1.08267 1.25805 2.55565 3.01285 3.33233 3.39891 3.42864 3.46081 3.65713 4.26825 4.45918 4.50773 4.66545 4.81695 4.87453 4.97068 5.05842 5.19293 5.20747 5.30100 5.34819 5.39764 5.45476 5.46630 5.51751 5.54899 5.66512 5.68478 5.72271 5.95583 6.06012 6.12495 6.13344 6.22381 6.30653 6.32825 6.47704 6.68092 6.88752 6.99426 7.16939 7.19835 7.37167 7.57249 7.92275 8.20171 8.93265 9.56336 11.03608 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004080 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.608625 B = 6860.721572 C = 7076.551164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.172 4.172 3 C 0.145 3.855 4 N -0.980 5.980 5 C 0.253 3.747 6 C -0.527 4.527 7 H 0.062 0.938 8 C 0.063 3.937 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.272 1.272 14 S 2.688 3.312 15 O -0.941 6.941 16 O -0.976 6.976 17 C -0.699 4.699 18 C 0.013 3.987 19 C -0.139 4.139 20 C -0.104 4.104 21 C 0.170 3.830 22 O -0.311 6.311 23 C 0.024 3.976 24 C -0.227 4.227 25 C 0.046 3.954 26 C -0.141 4.141 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.148 0.852 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -16.452 -7.536 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.020 3.980 4 N -0.819 5.819 5 C 0.131 3.869 6 C -0.566 4.566 7 H 0.080 0.920 8 C -0.139 4.139 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.196 1.196 14 S 2.776 3.224 15 O -0.931 6.931 16 O -0.967 6.967 17 C -0.783 4.783 18 C -0.005 4.005 19 C -0.141 4.141 20 C -0.161 4.161 21 C 0.124 3.876 22 O -0.223 6.223 23 C -0.071 4.071 24 C -0.246 4.246 25 C 0.044 3.956 26 C -0.198 4.198 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.152 0.848 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.591 -16.057 -7.495 18.305 hybrid contribution 0.049 0.150 0.440 0.468 sum 4.639 -15.907 -7.054 18.009 Atomic orbital electron populations 1.23790 0.95742 1.01687 1.00578 1.23513 0.96653 0.99177 0.99880 1.20395 0.93192 0.95439 0.89016 1.57402 1.27178 1.78950 1.18400 1.19170 0.96359 0.95601 0.75730 1.21455 1.43352 0.91726 1.00083 0.91971 1.24910 0.94961 0.98663 0.95379 1.69910 1.43643 1.35643 1.04260 0.86524 0.78439 0.85259 0.77431 1.20634 1.21092 1.19630 1.02225 0.73222 0.73404 0.73506 1.93635 1.68368 1.68839 1.62243 1.93504 1.84454 1.86910 1.31796 1.31121 1.02808 1.28017 1.16355 1.20807 0.96286 0.93229 0.90224 1.19332 0.96091 0.93839 1.04821 1.20616 0.95569 1.00724 0.99191 1.18974 0.93588 0.82918 0.92101 1.86083 1.41757 1.20201 1.74276 1.23109 0.86555 0.97020 1.00380 1.21060 1.00536 0.96052 1.06994 1.19150 0.92564 0.92653 0.91227 1.21197 0.96580 1.00724 1.01304 0.88171 0.88932 0.87933 0.88790 0.89227 0.94130 0.94443 0.92688 0.83423 0.91387 0.91234 0.90935 0.92411 0.88110 0.92464 0.84831 0.88517 0.91458 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.01 0.42 -1.98 16 2 C -0.17 -2.57 9.84 -36.02 -0.35 -2.93 16 3 C 0.15 2.53 6.10 -5.19 -0.03 2.49 16 4 N -0.98 -20.22 1.97 -116.94 -0.23 -20.45 16 5 C 0.25 6.17 4.12 -5.20 -0.02 6.15 16 6 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 7 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 10 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 S 2.69 55.53 4.21 -107.50 -0.45 55.08 16 15 O -0.94 -23.13 16.97 -57.17 -0.97 -24.10 16 16 O -0.98 -19.96 15.20 -57.17 -0.87 -20.83 16 17 C -0.70 -12.51 5.83 -39.56 -0.23 -12.74 16 18 C 0.01 0.22 8.75 -39.61 -0.35 -0.13 16 19 C -0.14 -2.09 5.89 -104.47 -0.62 -2.70 16 20 C -0.10 -1.30 9.79 36.01 0.35 -0.95 16 21 C 0.17 2.37 6.66 -39.22 -0.26 2.11 16 22 O -0.31 -3.67 9.54 -19.43 -0.19 -3.85 16 23 C 0.02 0.18 9.81 101.05 0.99 1.17 16 24 C -0.23 -3.05 8.69 -39.43 -0.34 -3.40 16 25 C 0.05 0.72 5.87 -104.65 -0.61 0.10 16 26 C -0.14 -1.96 8.85 36.00 0.32 -1.64 16 27 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 28 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.10 1.46 7.59 -52.48 -0.40 1.06 16 30 H 0.09 1.63 7.76 -51.93 -0.40 1.22 16 31 H 0.09 1.48 6.88 -51.93 -0.36 1.12 16 32 H 0.04 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.04 0.98 7.73 -51.93 -0.40 0.58 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.15 2.48 6.44 -52.49 -0.34 2.14 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 38 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 42 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 43 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.05 6.32 -51.93 -0.33 0.72 16 45 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -33.49 384.02 -9.02 -42.51 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.65 Total: 1.84 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -1.16 Total: -27.61 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.51 Total: -45.48 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -2.02 Total: -48.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 55.53 SS G_CDS: -0.45 Total: 55.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.49 -9.02 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292790694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.395 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds