Wall clock time and date at job start Sat Apr 11 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00301 * 2 1 4 4 N 1.46503 * 109.47096 * 124.99670 * 3 2 1 5 5 C 1.46502 * 119.99867 * 274.99639 * 4 3 2 6 6 C 1.50695 * 109.47126 * 274.29463 * 5 4 3 7 7 H 1.08000 * 120.00127 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99966 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00041 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00411 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47380 * 89.99788 * 10 8 6 12 12 H 1.48497 * 109.47181 * 210.00197 * 10 8 6 13 13 H 1.48509 * 109.46619 * 329.99942 * 10 8 6 14 14 S 1.65594 * 119.99932 * 95.00513 * 4 3 2 15 15 O 1.42103 * 106.40467 * 151.48281 * 14 4 3 16 16 O 1.42106 * 106.40539 * 18.55561 * 14 4 3 17 17 C 1.76204 * 107.21684 * 265.01762 * 14 4 3 18 18 C 1.38283 * 119.94266 * 345.38545 * 17 14 4 19 19 C 1.38127 * 120.05696 * 179.97438 * 18 17 14 20 20 C 1.50703 * 120.02918 * 180.02562 * 19 18 17 21 21 C 1.38749 * 119.94231 * 0.02562 * 19 18 17 22 22 O 1.35902 * 120.05723 * 179.97438 * 21 19 18 23 23 C 1.42901 * 117.00265 * 179.97438 * 22 21 19 24 24 C 1.38710 * 119.88896 * 359.97438 * 21 19 18 25 25 C 1.38163 * 119.94614 * 0.02562 * 24 21 19 26 26 C 1.50697 * 119.97610 * 179.97438 * 25 24 21 27 27 H 1.07998 * 119.99752 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99921 * 179.97438 * 1 2 3 29 29 H 1.08010 * 120.00054 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46801 * 4.99687 * 3 2 1 31 31 H 1.08998 * 109.46930 * 244.99525 * 3 2 1 32 32 H 1.09005 * 109.46968 * 34.29683 * 5 4 3 33 33 H 1.09004 * 109.46795 * 154.29420 * 5 4 3 34 34 H 0.96993 * 120.00602 * 180.02562 * 9 8 6 35 35 H 1.07998 * 119.97538 * 0.26928 * 18 17 14 36 36 H 1.08995 * 109.46763 * 90.00014 * 20 19 18 37 37 H 1.08997 * 109.46947 * 210.00237 * 20 19 18 38 38 H 1.08995 * 109.47206 * 330.00221 * 20 19 18 39 39 H 1.09002 * 109.46849 * 59.99817 * 23 22 21 40 40 H 1.09000 * 109.47219 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.46620 * 299.99905 * 23 22 21 42 42 H 1.08003 * 120.02616 * 179.97438 * 24 21 19 43 43 H 1.09004 * 109.47063 * 89.03738 * 26 25 24 44 44 H 1.08996 * 109.47416 * 209.03768 * 26 25 24 45 45 H 1.09005 * 109.47088 * 329.04105 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5284 1.7622 2.4523 6 6 2.6155 3.2634 2.5510 7 1 2.9806 3.8394 1.7136 8 6 2.2292 3.9016 3.7105 9 7 1.7851 3.2001 4.7306 10 14 2.3365 5.7625 3.8328 11 1 1.0594 6.3634 3.3709 12 1 2.5851 6.1523 5.2440 13 1 3.4503 6.2511 2.9807 14 16 4.5713 0.8759 0.9174 15 8 5.3310 1.5956 1.8787 16 8 4.8222 0.9423 -0.4797 17 6 4.6877 -0.8248 1.3635 18 6 3.6623 -1.4245 2.0713 19 6 3.7508 -2.7576 2.4218 20 6 2.6327 -3.4107 3.1927 21 6 4.8702 -3.4950 2.0634 22 8 4.9600 -4.8067 2.4074 23 6 6.1407 -5.5037 2.0046 24 6 5.8975 -2.8911 1.3533 25 6 5.8041 -1.5573 1.0052 26 6 6.9199 -0.9004 0.2343 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 1.4942 1.4482 2.5932 33 1 3.1535 1.3105 3.2227 34 1 1.5129 3.6490 5.5462 35 1 2.7892 -0.8513 2.3463 36 1 1.9076 -3.8304 2.4955 37 1 3.0385 -4.2061 3.8177 38 1 2.1432 -2.6677 3.8224 39 1 7.0142 -5.0244 2.4468 40 1 6.0843 -6.5388 2.3414 41 1 6.2240 -5.4795 0.9181 42 1 6.7700 -3.4629 1.0736 43 1 6.7422 -1.0193 -0.8346 44 1 6.9563 0.1607 0.4808 45 1 7.8685 -1.3676 0.4990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292790694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:17 Heat of formation + Delta-G solvation = -87.150405 kcal Electronic energy + Delta-G solvation = -28650.309161 eV Core-core repulsion = 24760.080370 eV Total energy + Delta-G solvation = -3890.228791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47409 -38.83228 -38.23494 -38.02239 -36.93232 -35.00983 -34.97755 -33.54620 -31.61628 -30.37139 -29.34087 -28.52028 -26.55664 -25.96725 -24.21894 -23.80609 -22.66074 -20.88110 -19.78754 -18.87345 -18.64813 -18.39004 -17.95726 -17.46531 -17.28006 -16.85458 -16.39487 -15.95242 -15.67955 -15.21291 -15.10260 -14.88601 -14.65819 -14.53675 -14.26113 -14.20959 -14.03505 -13.88193 -13.40562 -13.36522 -13.11851 -13.08620 -13.02647 -12.90900 -12.84095 -12.81055 -12.48466 -12.35558 -12.32846 -12.11532 -12.02702 -11.95549 -11.66926 -11.65035 -10.57444 -10.29568 -9.96803 -9.85280 -9.45472 -8.18711 -6.29680 -0.52656 -0.19496 0.11728 1.37609 1.40209 1.42604 1.53188 2.05204 2.16412 2.31815 2.43047 2.72169 3.12798 3.43053 3.59913 3.66323 3.85535 3.90068 4.02157 4.16624 4.22927 4.32318 4.35446 4.37828 4.39502 4.51027 4.55186 4.61866 4.73154 4.77889 4.78634 4.90803 4.91897 4.94991 5.05389 5.08839 5.18093 5.19531 5.24549 5.42318 5.57548 5.66440 5.74533 5.81115 6.00577 6.11731 6.22157 6.77425 7.38630 8.89195 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004080 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.608625 B = 6860.721572 C = 7076.551164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.190 4.190 3 C 0.140 3.860 4 N -0.984 5.984 5 C 0.273 3.727 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.015 3.985 9 N -0.922 5.922 10 Si 0.954 3.046 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.275 1.275 14 S 2.694 3.306 15 O -0.994 6.994 16 O -0.983 6.983 17 C -0.716 4.716 18 C -0.001 4.001 19 C -0.150 4.150 20 C -0.102 4.102 21 C 0.178 3.822 22 O -0.315 6.315 23 C 0.010 3.990 24 C -0.219 4.219 25 C 0.033 3.967 26 C -0.148 4.148 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.014 0.986 34 H 0.267 0.733 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.174 0.826 43 H 0.109 0.891 44 H 0.040 0.960 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -18.853 -8.133 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.210 4.210 3 C 0.015 3.985 4 N -0.823 5.823 5 C 0.150 3.850 6 C -0.587 4.587 7 H 0.071 0.929 8 C -0.184 4.184 9 N -0.562 5.562 10 Si 0.779 3.221 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.200 1.200 14 S 2.788 3.212 15 O -0.984 6.984 16 O -0.974 6.974 17 C -0.805 4.805 18 C -0.020 4.020 19 C -0.152 4.152 20 C -0.158 4.158 21 C 0.131 3.869 22 O -0.228 6.228 23 C -0.084 4.084 24 C -0.238 4.238 25 C 0.031 3.969 26 C -0.204 4.204 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.144 0.856 41 H 0.090 0.910 42 H 0.191 0.809 43 H 0.127 0.873 44 H 0.059 0.941 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.826 -18.421 -8.129 20.705 hybrid contribution 0.006 0.684 0.603 0.912 sum 4.832 -17.737 -7.526 19.864 Atomic orbital electron populations 1.24031 0.95143 1.03012 0.97681 1.23340 0.97162 0.98026 1.02447 1.20567 0.92934 0.97020 0.87980 1.57215 1.27554 1.79674 1.17818 1.18685 0.95471 0.93848 0.77042 1.21802 1.43349 0.93475 1.00089 0.92874 1.25691 0.94625 1.03057 0.95077 1.69999 1.44233 1.37299 1.04686 0.85620 0.78843 0.80151 0.77518 1.18904 1.20430 1.20004 1.01580 0.72534 0.74341 0.72794 1.93560 1.69808 1.71486 1.63541 1.93473 1.84458 1.87647 1.31785 1.30539 1.04970 1.25786 1.19219 1.20760 0.95936 0.94286 0.90991 1.19579 0.97455 0.93264 1.04888 1.20648 0.95194 1.00666 0.99331 1.19072 0.92963 0.83947 0.90946 1.86096 1.43857 1.18860 1.73941 1.23526 0.85312 0.97911 1.01625 1.21404 1.01607 0.95089 1.05732 1.19481 0.92183 0.93780 0.91445 1.21342 0.97920 0.99285 1.01882 0.88055 0.86297 0.87271 0.89285 0.88775 0.94502 0.96850 0.92373 0.84511 0.89831 0.90252 0.91473 0.91370 0.85552 0.90996 0.80885 0.87306 0.94148 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 14.32 67.78 0.97 -3.11 16 2 C -0.19 -5.67 9.84 25.65 0.25 -5.41 16 3 C 0.14 5.02 6.10 85.63 0.52 5.54 16 4 N -0.98 -42.67 1.97 -523.89 -1.03 -43.70 16 5 C 0.27 14.00 4.12 85.63 0.35 14.35 16 6 C -0.55 -31.39 9.39 25.60 0.24 -31.15 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.02 0.86 5.46 84.65 0.46 1.33 16 9 N -0.92 -54.20 13.29 21.45 0.28 -53.92 16 10 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 S 2.69 116.93 4.21 -56.49 -0.24 116.70 16 15 O -0.99 -52.03 16.97 -128.00 -2.17 -54.20 16 16 O -0.98 -41.71 15.20 -128.00 -1.95 -43.65 16 17 C -0.72 -26.19 5.83 22.28 0.13 -26.06 16 18 C 0.00 -0.03 8.75 22.25 0.19 0.17 16 19 C -0.15 -4.36 5.89 -19.77 -0.12 -4.48 16 20 C -0.10 -2.41 9.79 71.24 0.70 -1.71 16 21 C 0.18 4.53 6.66 22.51 0.15 4.67 16 22 O -0.32 -6.36 9.54 -92.45 -0.88 -7.24 16 23 C 0.01 0.11 9.81 113.37 1.11 1.22 16 24 C -0.22 -5.28 8.69 22.36 0.19 -5.09 16 25 C 0.03 1.01 5.87 -19.88 -0.12 0.89 16 26 C -0.15 -3.94 8.85 71.23 0.63 -3.31 16 27 H 0.10 2.55 7.84 -2.91 -0.02 2.52 16 28 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.11 3.10 7.59 -2.91 -0.02 3.08 16 30 H 0.09 3.21 7.76 -2.39 -0.02 3.19 16 31 H 0.09 3.22 6.88 -2.39 -0.02 3.21 16 32 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 33 H 0.01 0.75 7.73 -2.38 -0.02 0.73 16 34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.14 4.85 6.44 -2.91 -0.02 4.83 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.70 7.53 -2.39 -0.02 1.68 16 38 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 39 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 40 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 42 H 0.17 2.66 6.30 -2.91 -0.02 2.65 16 43 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 44 H 0.04 1.29 6.32 -2.39 -0.02 1.27 16 45 H 0.12 2.18 8.09 -2.38 -0.02 2.16 16 Total: -1.00 -74.85 384.02 2.70 -72.15 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.98 Total: 18.96 kcal Atomic # 6 Polarization: -57.81 SS G_CDS: 5.68 Total: -52.13 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -0.75 Total: -97.62 kcal Atomic # 8 Polarization: -100.10 SS G_CDS: -5.00 Total: -105.10 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 116.93 SS G_CDS: -0.24 Total: 116.70 kcal Total: -74.85 2.70 -72.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292790694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.003 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds