Wall clock time and date at job start Sat Apr 11 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99823 * 2 1 4 4 C 1.38242 * 119.99609 * 179.97438 * 3 2 1 5 5 C 1.38233 * 119.99967 * 359.95942 * 4 3 2 6 6 S 1.76203 * 119.99906 * 180.02562 * 5 4 3 7 7 O 1.42108 * 104.27690 * 333.92463 * 6 5 4 8 8 O 1.42100 * 104.27905 * 206.06937 * 6 5 4 9 9 C 1.81396 * 104.45209 * 89.99567 * 6 5 4 10 10 C 1.52999 * 109.47550 * 180.02562 * 9 6 5 11 11 H 1.08996 * 109.46929 * 59.99320 * 10 9 6 12 12 C 1.52997 * 109.47317 * 180.02562 * 10 9 6 13 13 N 1.46506 * 109.46684 * 300.00273 * 10 9 6 14 14 C 1.34775 * 119.99693 * 155.00124 * 13 10 9 15 15 O 1.21274 * 120.00425 * 359.97438 * 14 13 10 16 16 C 1.50706 * 119.99541 * 179.97438 * 14 13 10 17 17 C 1.53000 * 109.46655 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47001 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99580 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99752 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47424 * 89.99766 * 22 20 18 24 24 H 1.48503 * 109.46915 * 209.99724 * 22 20 18 25 25 H 1.48503 * 109.47240 * 329.99601 * 22 20 18 26 26 C 1.38236 * 120.00089 * 0.27048 * 5 4 3 27 27 C 1.38229 * 120.00153 * 359.51619 * 26 5 4 28 28 H 1.09002 * 109.47110 * 90.00053 * 1 2 3 29 29 H 1.08999 * 109.47275 * 210.00612 * 1 2 3 30 30 H 1.09004 * 109.46970 * 330.00523 * 1 2 3 31 31 H 1.07995 * 120.00129 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.99783 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47209 * 59.99712 * 9 6 5 34 34 H 1.09002 * 109.47214 * 300.00141 * 9 6 5 35 35 H 1.09002 * 109.47153 * 299.99641 * 12 10 9 36 36 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47261 * 59.99813 * 12 10 9 38 38 H 0.97000 * 120.00117 * 334.99772 * 13 10 9 39 39 H 1.09002 * 109.46644 * 299.99282 * 16 14 13 40 40 H 1.08999 * 109.46969 * 59.99809 * 16 14 13 41 41 H 1.08993 * 109.47105 * 299.99335 * 17 16 14 42 42 H 1.08999 * 109.47446 * 60.00274 * 17 16 14 43 43 H 0.96998 * 120.00058 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.99931 * 179.72995 * 26 5 4 45 45 H 1.07999 * 120.00567 * 180.24717 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0019 6 16 6.0337 -0.0001 0.0033 7 8 6.3846 1.2365 -0.6027 8 8 6.3846 -1.2375 -0.6007 9 6 6.4850 0.0013 1.7602 10 6 8.0090 0.0020 1.8953 11 1 8.4159 0.8918 1.4149 12 6 8.3897 0.0025 3.3772 13 7 8.5569 -1.1944 1.2513 14 6 9.8243 -1.1924 0.7929 15 8 10.5111 -0.2002 0.9131 16 6 10.3880 -2.4233 0.1309 17 6 11.8333 -2.1570 -0.2944 18 6 12.3973 -3.3881 -0.9559 19 1 11.7860 -4.2722 -1.0619 20 6 13.6939 -3.3861 -1.4247 21 7 14.4384 -2.3098 -1.2952 22 14 14.3926 -4.9119 -2.2452 23 1 14.1278 -4.8541 -3.7053 24 1 15.8576 -4.9735 -2.0100 25 1 13.7481 -6.1210 -1.6727 26 6 3.5805 -1.1971 -0.0029 27 6 2.1982 -1.1972 0.0010 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6581 2.1325 -0.0004 32 1 4.1205 2.1324 0.0001 33 1 6.0777 -0.8883 2.2407 34 1 6.0778 0.8917 2.2393 35 1 7.9820 0.8925 3.8568 36 1 9.4754 0.0026 3.4734 37 1 7.9828 -0.8875 3.8572 38 1 8.0075 -1.9880 1.1548 39 1 10.3631 -3.2570 0.8327 40 1 9.7907 -2.6695 -0.7471 41 1 11.8578 -1.3235 -0.9963 42 1 12.4309 -1.9106 0.5833 43 1 15.3504 -2.3083 -1.6254 44 1 4.1205 -2.1325 -0.0062 45 1 1.6581 -2.1324 0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293480395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:20 Heat of formation + Delta-G solvation = -127.916417 kcal Electronic energy + Delta-G solvation = -26762.821384 eV Core-core repulsion = 22870.824846 eV Total energy + Delta-G solvation = -3891.996538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.93858 -40.30147 -38.23323 -37.38528 -36.98895 -35.54983 -34.00375 -33.39395 -32.18671 -32.04012 -28.90610 -28.16635 -27.71830 -24.26872 -23.86409 -22.96565 -22.23148 -21.38291 -20.10586 -18.88905 -18.86144 -17.78792 -17.69361 -17.15121 -16.92705 -16.48655 -16.39605 -16.29676 -15.91985 -15.38937 -15.00772 -14.76968 -14.66448 -14.53802 -14.51818 -14.17354 -13.85275 -13.69918 -13.26794 -13.23878 -13.21604 -13.12157 -13.09668 -13.08402 -13.03779 -12.81310 -12.46210 -12.27941 -12.09754 -11.94468 -11.91733 -11.64259 -11.49782 -11.30488 -10.78965 -10.56789 -10.28744 -10.05449 -10.05356 -8.17291 -6.31263 -1.04495 -0.21138 0.30094 1.41915 1.45468 1.56232 1.62683 1.86238 2.09704 2.39716 2.44380 2.85754 3.08837 3.15305 3.29991 3.72132 3.83686 3.86578 3.95743 3.99340 4.09844 4.28544 4.35712 4.39165 4.50962 4.54462 4.56028 4.66886 4.70427 4.72951 4.79942 4.91055 5.01180 5.08504 5.09559 5.10042 5.24584 5.24887 5.37358 5.48887 5.50706 5.63313 5.85508 5.87905 6.18440 6.47840 6.86324 7.24540 7.38471 8.95464 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002341 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.177822 B =11957.815399 C =12726.291380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.036 4.036 3 C -0.149 4.149 4 C -0.039 4.039 5 C -0.670 4.670 6 S 2.481 3.519 7 O -0.982 6.982 8 O -0.961 6.961 9 C -0.589 4.589 10 C 0.136 3.864 11 H 0.077 0.923 12 C -0.150 4.150 13 N -0.735 5.735 14 C 0.515 3.485 15 O -0.579 6.579 16 C -0.125 4.125 17 C 0.041 3.959 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.937 5.937 22 Si 0.976 3.024 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.254 1.254 26 C -0.033 4.033 27 C -0.148 4.148 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.096 0.904 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.421 0.579 39 H 0.111 0.889 40 H 0.099 0.901 41 H -0.020 1.020 42 H -0.012 1.012 43 H 0.263 0.737 44 H 0.152 0.848 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.225 3.445 10.521 36.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.036 4.036 3 C -0.167 4.167 4 C -0.058 4.058 5 C -0.759 4.759 6 S 2.667 3.333 7 O -0.979 6.979 8 O -0.958 6.958 9 C -0.721 4.721 10 C 0.031 3.969 11 H 0.095 0.905 12 C -0.209 4.209 13 N -0.392 5.392 14 C 0.304 3.696 15 O -0.457 6.457 16 C -0.165 4.165 17 C 0.004 3.996 18 C -0.581 4.581 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.800 3.200 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.178 1.178 26 C -0.052 4.052 27 C -0.167 4.167 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.203 0.797 34 H 0.207 0.793 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.259 0.741 39 H 0.129 0.871 40 H 0.118 0.882 41 H -0.001 1.001 42 H 0.006 0.994 43 H 0.072 0.928 44 H 0.170 0.830 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -34.066 4.223 9.818 35.704 hybrid contribution 0.282 -0.480 -0.208 0.594 sum -33.784 3.743 9.610 35.324 Atomic orbital electron populations 1.21023 0.88430 1.04709 1.03806 1.20709 0.98157 0.92990 0.91717 1.21525 0.93647 0.99449 1.02122 1.21203 0.95728 0.96732 0.92101 1.30260 1.24393 1.00432 1.20853 1.05519 0.74777 0.73687 0.79277 1.93530 1.83155 1.46147 1.75095 1.93534 1.82691 1.44849 1.74704 1.30510 1.02123 1.17138 1.22321 1.20786 0.89701 0.89151 0.97305 0.90474 1.22107 1.01521 1.04977 0.92331 1.46366 1.14010 1.17691 1.61092 1.21338 0.81496 0.90067 0.76731 1.90655 1.60213 1.36806 1.58063 1.21708 0.98056 0.95138 1.01598 1.18706 0.90809 0.95482 0.94647 1.21714 0.98380 0.99698 1.38353 0.90646 1.26166 0.97695 0.99953 0.96799 1.70180 1.09143 1.30656 1.47732 0.85290 0.77179 0.78960 0.78609 1.19875 1.20977 1.17810 1.21243 0.95622 0.96760 0.91559 1.21554 0.93784 0.99389 1.01973 0.89656 0.89664 0.89745 0.82800 0.83754 0.79716 0.79328 0.88506 0.94189 0.89447 0.74068 0.87078 0.88249 1.00142 0.99385 0.92845 0.83006 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 71.23 0.71 0.18 16 2 C -0.04 -0.37 5.88 -19.86 -0.12 -0.49 16 3 C -0.15 -1.78 9.70 22.27 0.22 -1.56 16 4 C -0.04 -0.62 9.47 22.27 0.21 -0.41 16 5 C -0.67 -11.78 5.66 22.27 0.13 -11.65 16 6 S 2.48 55.04 4.94 -56.49 -0.28 54.76 16 7 O -0.98 -30.60 17.13 -127.65 -2.19 -32.78 16 8 O -0.96 -26.87 15.86 -127.65 -2.02 -28.89 16 9 C -0.59 -7.34 5.54 71.98 0.40 -6.95 16 10 C 0.14 3.10 2.63 44.99 0.12 3.22 16 11 H 0.08 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 13 N -0.73 -20.92 4.20 -442.53 -1.86 -22.78 16 14 C 0.51 21.22 7.79 87.66 0.68 21.90 16 15 O -0.58 -29.32 15.64 -3.01 -0.05 -29.37 16 16 C -0.13 -5.45 5.64 29.85 0.17 -5.28 16 17 C 0.04 2.41 4.26 29.85 0.13 2.54 16 18 C -0.54 -32.24 9.11 25.60 0.23 -32.01 16 19 H 0.08 4.09 7.74 -2.91 -0.02 4.07 16 20 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 21 N -0.94 -61.09 13.29 21.45 0.28 -60.80 16 22 Si 0.98 45.77 29.54 68.60 2.03 47.80 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.25 -11.04 7.11 99.48 0.71 -10.33 16 26 C -0.03 -0.49 9.47 22.27 0.21 -0.28 16 27 C -0.15 -1.71 9.70 22.27 0.22 -1.49 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.19 8.09 -2.39 -0.02 0.17 16 30 H 0.08 0.19 8.09 -2.38 -0.02 0.17 16 31 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.14 2.08 7.57 -2.91 -0.02 2.06 16 33 H 0.19 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.19 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.42 9.22 7.92 -92.71 -0.73 8.48 16 39 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 40 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 41 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 42 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 43 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 44 H 0.15 1.90 7.57 -2.91 -0.02 1.88 16 45 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -94.02 392.04 0.61 -93.41 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.25 Total: 13.14 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 4.45 Total: -34.46 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.58 Total: -83.59 kcal Atomic # 8 Polarization: -86.79 SS G_CDS: -4.26 Total: -91.04 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.28 Total: 54.76 kcal Total: -94.02 0.61 -93.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293480395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.510 kcal (2) G-P(sol) polarization free energy of solvation -94.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds