Wall clock time and date at job start Sat Apr 11 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.52375 * 2 1 4 4 C 1.53191 * 109.49944 * 239.91949 * 2 1 3 5 5 N 1.46960 * 108.89175 * 185.49230 * 4 2 1 6 6 S 1.65599 * 120.65431 * 233.53961 * 5 4 2 7 7 O 1.42095 * 106.40567 * 23.35030 * 6 5 4 8 8 O 1.42099 * 106.40349 * 156.27295 * 6 5 4 9 9 C 1.76206 * 107.21324 * 269.81186 * 6 5 4 10 10 C 1.38632 * 119.74679 * 269.72711 * 9 6 5 11 11 C 1.37623 * 120.24469 * 179.72341 * 10 9 6 12 12 C 1.40717 * 119.74455 * 0.57266 * 11 10 9 13 13 C 1.41391 * 120.24315 * 179.68038 * 12 11 10 14 14 H 1.07997 * 120.00070 * 24.40348 * 13 12 11 15 15 C 1.39946 * 120.00089 * 204.39698 * 13 12 11 16 16 N 1.30826 * 119.99599 * 17.85588 * 15 13 12 17 17 Si 1.86800 * 120.00201 * 197.85239 * 15 13 12 18 18 H 1.48499 * 109.47144 * 90.00403 * 17 15 13 19 19 H 1.48499 * 109.47071 * 210.00401 * 17 15 13 20 20 H 1.48503 * 109.47013 * 329.99884 * 17 15 13 21 21 C 1.40712 * 119.51321 * 359.70135 * 12 11 10 22 22 C 1.37621 * 119.74118 * 0.02562 * 21 12 11 23 23 C 1.46925 * 118.71301 * 53.35331 * 5 4 2 24 24 C 1.53190 * 108.89593 * 306.64159 * 23 5 4 25 25 C 1.53042 * 109.49706 * 120.07772 * 2 1 3 26 26 H 1.09002 * 109.45648 * 61.30295 * 25 2 1 27 27 O 1.42892 * 109.46103 * 301.33857 * 25 2 1 28 28 H 1.09004 * 109.46979 * 299.92346 * 1 2 3 29 29 H 1.09007 * 109.46943 * 59.91795 * 1 2 3 30 30 H 1.08998 * 109.46775 * 179.91813 * 1 2 3 31 31 H 1.09003 * 109.46917 * 180.08118 * 3 2 1 32 32 H 1.08997 * 109.46836 * 300.07605 * 3 2 1 33 33 H 1.08998 * 109.47026 * 60.07876 * 3 2 1 34 34 H 1.09000 * 109.58255 * 305.20236 * 4 2 1 35 35 H 1.09001 * 109.58626 * 65.48602 * 4 2 1 36 36 H 1.07998 * 119.87886 * 359.97438 * 10 9 6 37 37 H 1.08002 * 120.12540 * 180.27354 * 11 10 9 38 38 H 0.96998 * 119.99397 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.13147 * 180.02562 * 21 12 11 40 40 H 1.07998 * 119.87442 * 179.97438 * 22 21 12 41 41 H 1.09002 * 109.58841 * 186.78876 * 23 5 4 42 42 H 1.09000 * 109.59081 * 66.50545 * 23 5 4 43 43 H 1.08999 * 109.50521 * 174.51662 * 24 23 5 44 44 H 1.09006 * 109.49801 * 294.61552 * 24 23 5 45 45 H 0.96702 * 114.00220 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5048 -0.8322 -1.1712 6 16 4.4592 -0.2906 -2.4115 7 8 3.6930 0.6782 -3.1139 8 8 5.7329 -0.0132 -1.8460 9 6 4.6902 -1.6410 -3.5196 10 6 5.7660 -2.4978 -3.3450 11 6 5.9531 -3.5591 -4.2010 12 6 5.0541 -3.7657 -5.2637 13 6 5.2401 -4.8487 -6.1534 14 1 5.7888 -5.7221 -5.8337 15 6 4.7129 -4.7888 -7.4484 16 7 4.3634 -3.6364 -7.9597 17 14 4.5085 -6.3542 -8.4470 18 1 3.1637 -6.9308 -8.1938 19 1 4.6490 -6.0416 -9.8919 20 1 5.5505 -7.3347 -8.0492 21 6 3.9690 -2.8863 -5.4346 22 6 3.7984 -1.8350 -4.5631 23 6 4.1053 -1.4267 0.0308 24 6 3.5709 -0.6950 1.2660 25 6 2.0408 -0.7230 1.2484 26 1 1.6968 -1.7572 1.2353 27 8 1.5391 -0.0694 2.4158 28 1 -0.3633 0.5127 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0277 -0.0015 31 1 3.1314 1.4411 -0.0015 32 1 1.6774 1.9566 -0.8893 33 1 1.6796 1.9558 0.8907 34 1 1.6052 -1.7216 -1.2980 35 1 1.7617 -0.1592 -2.1390 36 1 6.4576 -2.3342 -2.5318 37 1 6.7893 -4.2279 -4.0605 38 1 3.9983 -3.5950 -8.8574 39 1 3.2727 -3.0358 -6.2466 40 1 2.9665 -1.1585 -4.6925 41 1 5.1896 -1.3246 -0.0137 42 1 3.8398 -2.4823 0.0880 43 1 3.9334 -1.1896 2.1671 44 1 3.9160 0.3389 1.2540 45 1 1.8230 -0.4751 3.2464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314415104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:45 Heat of formation + Delta-G solvation = -120.567749 kcal Electronic energy + Delta-G solvation = -28429.349058 eV Core-core repulsion = 24537.671183 eV Total energy + Delta-G solvation = -3891.677876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.77871 -37.58718 -36.60174 -36.00639 -35.14075 -34.05649 -33.79976 -31.01033 -30.26669 -29.48695 -27.25963 -26.62762 -25.82778 -24.08458 -22.26044 -21.48079 -21.14886 -18.96970 -18.32750 -17.65490 -17.50265 -17.14576 -16.51884 -15.71893 -15.49062 -15.03983 -14.56531 -14.39767 -14.26058 -14.09450 -13.54170 -13.40991 -13.23092 -13.21322 -12.45890 -12.32071 -12.24386 -12.18128 -12.05392 -11.94253 -11.76734 -11.74120 -11.47365 -11.33036 -11.27570 -11.24244 -11.17984 -11.04380 -10.90051 -10.62037 -10.42647 -10.24470 -9.89400 -9.77239 -9.62443 -9.50200 -8.71671 -7.97194 -7.72370 -7.15465 -4.81720 1.16187 2.23982 2.86452 2.88850 2.91318 2.91779 3.55615 3.65058 4.05592 4.23467 4.47628 4.55790 4.63573 4.85345 4.95301 5.13325 5.17566 5.20520 5.28797 5.38040 5.52305 5.63061 5.69038 5.70625 5.76650 5.82667 5.92999 5.99407 6.03705 6.09052 6.10705 6.12253 6.20176 6.39468 6.44679 6.64390 6.67320 6.79271 6.97827 7.03698 7.32118 7.40622 7.51051 7.61604 7.75140 7.95105 8.30239 8.49556 8.63352 9.76045 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.003093 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.539488 B = 9050.302233 C = 9307.904636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.139 4.139 4 C 0.130 3.870 5 N -1.003 6.003 6 S 2.690 3.310 7 O -0.978 6.978 8 O -0.983 6.983 9 C -0.788 4.788 10 C 0.001 3.999 11 C -0.239 4.239 12 C 0.139 3.861 13 C -0.436 4.436 14 H 0.088 0.912 15 C 0.072 3.928 16 N -0.764 5.764 17 Si 0.918 3.082 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.183 4.183 22 C -0.015 4.015 23 C 0.124 3.876 24 C -0.167 4.167 25 C 0.118 3.882 26 H 0.056 0.944 27 O -0.564 6.564 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.290 0.710 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 1.413 13.463 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.197 4.197 4 C 0.005 3.995 5 N -0.838 5.838 6 S 2.791 3.209 7 O -0.969 6.969 8 O -0.974 6.974 9 C -0.884 4.884 10 C -0.019 4.019 11 C -0.259 4.259 12 C 0.136 3.864 13 C -0.463 4.463 14 H 0.106 0.894 15 C -0.151 4.151 16 N -0.386 5.386 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.198 1.198 20 H -0.182 1.182 21 C -0.203 4.203 22 C -0.036 4.036 23 C -0.002 4.002 24 C -0.206 4.206 25 C 0.060 3.940 26 H 0.074 0.926 27 O -0.369 6.369 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.142 2.813 12.730 14.411 hybrid contribution 0.206 -1.784 -0.433 1.847 sum -5.936 1.029 12.297 13.693 Atomic orbital electron populations 1.21751 0.93453 1.01852 1.02364 1.20854 0.96154 0.96559 0.93277 1.21843 1.01121 0.94644 1.02055 1.21476 0.79309 1.00593 0.98162 1.57954 1.15741 1.78358 1.31742 1.01368 0.72272 0.74703 0.72553 1.93473 1.71759 1.58706 1.72967 1.93463 1.40532 1.84775 1.78625 1.29211 1.12043 1.27115 1.20041 1.20147 0.93138 0.92437 0.96214 1.21020 1.01915 1.01265 1.01712 1.17851 0.88527 0.90411 0.89646 1.19948 1.28098 1.02431 0.95833 0.89427 1.26150 0.92409 0.97924 0.98579 1.69827 1.26907 1.25953 1.15955 0.86133 0.80221 0.81144 0.78379 1.18795 1.19846 1.18193 1.21341 0.99988 0.97842 1.01171 1.20243 0.95319 0.95586 0.92415 1.21266 0.98764 0.96790 0.83392 1.22675 0.96697 1.02773 0.98443 1.21724 0.91947 0.94980 0.85392 0.92630 1.86509 1.75676 1.58925 1.15756 0.91602 0.92341 0.92742 0.92719 0.92251 0.91966 0.91339 0.88301 0.87923 0.88194 0.89914 0.85982 0.87949 0.88708 0.91443 0.90825 0.90236 0.78017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.32 37.16 0.31 -1.11 16 2 C -0.07 -0.79 0.60 -154.38 -0.09 -0.88 16 3 C -0.14 -1.80 7.85 37.16 0.29 -1.51 16 4 C 0.13 1.76 5.14 -3.69 -0.02 1.74 16 5 N -1.00 -15.20 2.74 -113.50 -0.31 -15.51 16 6 S 2.69 52.45 5.73 -107.50 -0.62 51.83 16 7 O -0.98 -20.91 15.85 -57.17 -0.91 -21.82 16 8 O -0.98 -20.78 15.84 -57.17 -0.91 -21.68 16 9 C -0.79 -17.40 6.00 -39.29 -0.24 -17.64 16 10 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 11 C -0.24 -5.61 9.80 -38.87 -0.38 -5.99 16 12 C 0.14 3.52 5.58 -106.83 -0.60 2.92 16 13 C -0.44 -10.63 9.05 -37.74 -0.34 -10.97 16 14 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 15 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 16 N -0.76 -18.28 10.95 55.55 0.61 -17.67 16 17 Si 0.92 16.89 29.60 -169.99 -5.03 11.86 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 21 C -0.18 -4.56 8.70 -38.87 -0.34 -4.90 16 22 C -0.02 -0.35 9.49 -39.66 -0.38 -0.73 16 23 C 0.12 1.56 6.47 -3.71 -0.02 1.54 16 24 C -0.17 -1.74 5.36 -26.61 -0.14 -1.89 16 25 C 0.12 1.22 2.56 -26.69 -0.07 1.15 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 O -0.56 -5.40 11.98 -35.23 -0.42 -5.82 16 28 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.76 5.98 -51.93 -0.31 0.45 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.76 7.72 -51.93 -0.40 0.36 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.42 6.92 -51.93 -0.36 1.06 16 36 H 0.10 2.05 7.59 -52.49 -0.40 1.65 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 39 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 40 H 0.10 2.19 7.60 -52.49 -0.40 1.79 16 41 H 0.09 1.25 6.92 -51.93 -0.36 0.89 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.93 6.34 -51.93 -0.33 0.61 16 45 H 0.37 2.06 9.08 45.56 0.41 2.47 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -30.11 366.78 -10.33 -40.44 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.79 Total: 9.93 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: -2.48 Total: -37.07 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.30 Total: -33.19 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -2.23 Total: -49.33 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 52.45 SS G_CDS: -0.62 Total: 51.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.11 -10.33 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314415104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.128 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds