Wall clock time and date at job start Sat Apr 11 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.52375 * 2 1 4 4 C 1.53191 * 109.49944 * 239.91949 * 2 1 3 5 5 N 1.46960 * 108.89175 * 185.49230 * 4 2 1 6 6 S 1.65599 * 120.65431 * 233.53961 * 5 4 2 7 7 O 1.42095 * 106.40567 * 23.35030 * 6 5 4 8 8 O 1.42099 * 106.40349 * 156.27295 * 6 5 4 9 9 C 1.76206 * 107.21324 * 269.81186 * 6 5 4 10 10 C 1.38632 * 119.74679 * 269.72711 * 9 6 5 11 11 C 1.37623 * 120.24469 * 179.72341 * 10 9 6 12 12 C 1.40717 * 119.74455 * 0.57266 * 11 10 9 13 13 C 1.41391 * 120.24315 * 179.68038 * 12 11 10 14 14 H 1.07997 * 120.00070 * 24.40348 * 13 12 11 15 15 C 1.39946 * 120.00089 * 204.39698 * 13 12 11 16 16 N 1.30826 * 119.99599 * 17.85588 * 15 13 12 17 17 Si 1.86800 * 120.00201 * 197.85239 * 15 13 12 18 18 H 1.48499 * 109.47144 * 90.00403 * 17 15 13 19 19 H 1.48499 * 109.47071 * 210.00401 * 17 15 13 20 20 H 1.48503 * 109.47013 * 329.99884 * 17 15 13 21 21 C 1.40712 * 119.51321 * 359.70135 * 12 11 10 22 22 C 1.37621 * 119.74118 * 0.02562 * 21 12 11 23 23 C 1.46925 * 118.71301 * 53.35331 * 5 4 2 24 24 C 1.53190 * 108.89593 * 306.64159 * 23 5 4 25 25 C 1.53042 * 109.49706 * 120.07772 * 2 1 3 26 26 H 1.09002 * 109.45648 * 61.30295 * 25 2 1 27 27 O 1.42892 * 109.46103 * 301.33857 * 25 2 1 28 28 H 1.09004 * 109.46979 * 299.92346 * 1 2 3 29 29 H 1.09007 * 109.46943 * 59.91795 * 1 2 3 30 30 H 1.08998 * 109.46775 * 179.91813 * 1 2 3 31 31 H 1.09003 * 109.46917 * 180.08118 * 3 2 1 32 32 H 1.08997 * 109.46836 * 300.07605 * 3 2 1 33 33 H 1.08998 * 109.47026 * 60.07876 * 3 2 1 34 34 H 1.09000 * 109.58255 * 305.20236 * 4 2 1 35 35 H 1.09001 * 109.58626 * 65.48602 * 4 2 1 36 36 H 1.07998 * 119.87886 * 359.97438 * 10 9 6 37 37 H 1.08002 * 120.12540 * 180.27354 * 11 10 9 38 38 H 0.96998 * 119.99397 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.13147 * 180.02562 * 21 12 11 40 40 H 1.07998 * 119.87442 * 179.97438 * 22 21 12 41 41 H 1.09002 * 109.58841 * 186.78876 * 23 5 4 42 42 H 1.09000 * 109.59081 * 66.50545 * 23 5 4 43 43 H 1.08999 * 109.50521 * 174.51662 * 24 23 5 44 44 H 1.09006 * 109.49801 * 294.61552 * 24 23 5 45 45 H 0.96702 * 114.00220 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5048 -0.8322 -1.1712 6 16 4.4592 -0.2906 -2.4115 7 8 3.6930 0.6782 -3.1139 8 8 5.7329 -0.0132 -1.8460 9 6 4.6902 -1.6410 -3.5196 10 6 5.7660 -2.4978 -3.3450 11 6 5.9531 -3.5591 -4.2010 12 6 5.0541 -3.7657 -5.2637 13 6 5.2401 -4.8487 -6.1534 14 1 5.7888 -5.7221 -5.8337 15 6 4.7129 -4.7888 -7.4484 16 7 4.3634 -3.6364 -7.9597 17 14 4.5085 -6.3542 -8.4470 18 1 3.1637 -6.9308 -8.1938 19 1 4.6490 -6.0416 -9.8919 20 1 5.5505 -7.3347 -8.0492 21 6 3.9690 -2.8863 -5.4346 22 6 3.7984 -1.8350 -4.5631 23 6 4.1053 -1.4267 0.0308 24 6 3.5709 -0.6950 1.2660 25 6 2.0408 -0.7230 1.2484 26 1 1.6968 -1.7572 1.2353 27 8 1.5391 -0.0694 2.4158 28 1 -0.3633 0.5127 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0277 -0.0015 31 1 3.1314 1.4411 -0.0015 32 1 1.6774 1.9566 -0.8893 33 1 1.6796 1.9558 0.8907 34 1 1.6052 -1.7216 -1.2980 35 1 1.7617 -0.1592 -2.1390 36 1 6.4576 -2.3342 -2.5318 37 1 6.7893 -4.2279 -4.0605 38 1 3.9983 -3.5950 -8.8574 39 1 3.2727 -3.0358 -6.2466 40 1 2.9665 -1.1585 -4.6925 41 1 5.1896 -1.3246 -0.0137 42 1 3.8398 -2.4823 0.0880 43 1 3.9334 -1.1896 2.1671 44 1 3.9160 0.3389 1.2540 45 1 1.8230 -0.4751 3.2464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314415104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:44 Heat of formation + Delta-G solvation = -140.686571 kcal Electronic energy + Delta-G solvation = -28430.221476 eV Core-core repulsion = 24537.671183 eV Total energy + Delta-G solvation = -3892.550293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.70093 -39.39235 -38.24860 -36.91069 -36.76922 -35.81754 -34.77879 -32.10816 -31.93588 -31.30958 -28.20720 -27.64458 -27.57127 -25.08888 -23.36529 -23.11256 -22.95038 -20.20132 -19.49495 -19.43956 -18.77900 -18.23055 -18.00087 -17.24994 -16.95461 -15.96355 -15.88024 -15.82046 -15.46194 -15.21969 -15.12157 -14.92707 -14.44422 -14.16630 -14.12633 -13.98539 -13.56786 -13.42690 -13.31354 -13.15028 -13.09583 -12.97259 -12.90407 -12.89155 -12.77062 -12.58327 -12.57089 -12.25253 -12.00327 -11.95233 -11.64425 -11.55884 -11.34263 -11.21245 -11.09651 -10.66535 -9.95519 -9.76633 -9.56759 -8.88078 -6.66135 -0.38525 0.47051 1.03959 1.35612 1.43127 1.51347 2.10335 2.14895 2.52038 2.90839 3.31780 3.43618 3.49083 3.61876 3.80049 3.98464 4.12647 4.19415 4.28467 4.29930 4.30916 4.38550 4.63741 4.71722 4.73281 4.81255 4.83184 4.85478 4.91735 4.93324 4.96871 5.07172 5.08958 5.13153 5.22433 5.23619 5.26179 5.47387 5.49590 5.50951 5.57692 5.68722 5.78572 5.92456 6.14011 6.47817 6.67041 6.79810 7.00855 8.07130 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.003093 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.539488 B = 9050.302233 C = 9307.904636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.139 4.139 4 C 0.123 3.877 5 N -0.995 5.995 6 S 2.715 3.285 7 O -1.000 7.000 8 O -0.999 6.999 9 C -0.798 4.798 10 C -0.003 4.003 11 C -0.255 4.255 12 C 0.111 3.889 13 C -0.465 4.465 14 H 0.094 0.906 15 C 0.033 3.967 16 N -0.799 5.799 17 Si 0.994 3.006 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.252 1.252 21 C -0.207 4.207 22 C -0.021 4.021 23 C 0.113 3.887 24 C -0.161 4.161 25 C 0.124 3.876 26 H 0.071 0.929 27 O -0.573 6.573 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.298 0.702 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 0.254 15.148 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.002 4.002 5 N -0.833 5.833 6 S 2.813 3.187 7 O -0.991 6.991 8 O -0.990 6.990 9 C -0.891 4.891 10 C -0.022 4.022 11 C -0.276 4.276 12 C 0.108 3.892 13 C -0.492 4.492 14 H 0.112 0.888 15 C -0.186 4.186 16 N -0.422 5.422 17 Si 0.813 3.187 18 H -0.182 1.182 19 H -0.191 1.191 20 H -0.176 1.176 21 C -0.227 4.227 22 C -0.041 4.041 23 C -0.012 4.012 24 C -0.201 4.201 25 C 0.065 3.935 26 H 0.089 0.911 27 O -0.381 6.381 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.827 1.639 14.413 16.032 hybrid contribution 0.407 -1.301 -0.812 1.586 sum -6.421 0.338 13.601 15.045 Atomic orbital electron populations 1.21714 0.92214 1.02689 1.02365 1.20861 0.97089 0.95596 0.93455 1.21837 1.00188 0.95745 1.01872 1.21690 0.78026 1.01741 0.98743 1.57596 1.16234 1.78385 1.31099 1.00588 0.72014 0.73668 0.72447 1.93440 1.72125 1.59343 1.74162 1.93434 1.42015 1.84807 1.78728 1.29711 1.11485 1.27370 1.20548 1.20443 0.93427 0.91922 0.96452 1.21260 1.02248 1.02237 1.01821 1.18205 0.89133 0.91139 0.90765 1.20249 1.29494 1.02660 0.96803 0.88846 1.27061 0.91277 1.01141 0.99134 1.69868 1.27378 1.28111 1.16824 0.85013 0.80297 0.76648 0.76745 1.18193 1.19060 1.17581 1.21359 1.00435 0.99172 1.01727 1.20431 0.95942 0.95284 0.92426 1.21588 0.98449 0.98176 0.82950 1.22660 0.96959 1.01926 0.98508 1.21600 0.91532 0.95362 0.84999 0.91067 1.86469 1.75711 1.59399 1.16503 0.91469 0.92493 0.91481 0.94111 0.93266 0.91307 0.89527 0.89713 0.85692 0.86925 0.89038 0.87123 0.86917 0.89450 0.89333 0.87552 0.91759 0.75752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.32 71.98 0.60 -1.86 16 2 C -0.07 -1.48 0.60 -52.10 -0.03 -1.51 16 3 C -0.14 -3.48 7.85 71.98 0.57 -2.91 16 4 C 0.12 3.15 5.14 86.36 0.44 3.59 16 5 N -1.00 -28.94 2.74 -512.99 -1.41 -30.35 16 6 S 2.71 105.21 5.73 -56.49 -0.32 104.88 16 7 O -1.00 -43.09 15.85 -128.00 -2.03 -45.12 16 8 O -1.00 -41.75 15.84 -128.00 -2.03 -43.78 16 9 C -0.80 -35.43 6.00 22.46 0.13 -35.30 16 10 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 11 C -0.26 -12.18 9.80 22.73 0.22 -11.96 16 12 C 0.11 5.76 5.58 -21.29 -0.12 5.64 16 13 C -0.47 -23.15 9.05 23.46 0.21 -22.94 16 14 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 15 C 0.03 1.54 5.14 85.26 0.44 1.97 16 16 N -0.80 -39.08 10.95 21.83 0.24 -38.84 16 17 Si 0.99 34.33 29.60 68.60 2.03 36.36 16 18 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 19 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 20 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 21 C -0.21 -10.66 8.70 22.73 0.20 -10.47 16 22 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 23 C 0.11 2.59 6.47 86.36 0.56 3.15 16 24 C -0.16 -2.90 5.36 30.67 0.16 -2.74 16 25 C 0.12 2.16 2.56 30.62 0.08 2.24 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 O -0.57 -9.04 11.98 -148.98 -1.78 -10.82 16 28 H 0.07 1.25 7.65 -2.38 -0.02 1.23 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.11 5.98 -2.39 -0.01 1.10 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.59 7.72 -2.39 -0.02 1.57 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.41 6.92 -2.39 -0.02 2.39 16 36 H 0.13 4.88 7.59 -2.91 -0.02 4.86 16 37 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.30 12.98 8.30 -92.71 -0.77 12.21 16 39 H 0.11 5.83 6.16 -2.91 -0.02 5.82 16 40 H 0.11 4.96 7.60 -2.91 -0.02 4.93 16 41 H 0.09 2.15 6.92 -2.39 -0.02 2.14 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 44 H 0.06 1.38 6.34 -2.38 -0.02 1.37 16 45 H 0.39 2.81 9.08 -74.06 -0.67 2.14 16 Total: -1.00 -65.86 366.78 -1.08 -66.94 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.34 Total: 34.49 kcal Atomic # 6 Polarization: -77.66 SS G_CDS: 3.89 Total: -73.77 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.17 Total: -69.18 kcal Atomic # 8 Polarization: -93.89 SS G_CDS: -5.84 Total: -99.73 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Atomic # 16 Polarization: 105.21 SS G_CDS: -0.32 Total: 104.88 kcal Total: -65.86 -1.08 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314415104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.742 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds