Wall clock time and date at job start Sat Apr 11 2020 05:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.33759 * 2 1 4 4 C 1.54296 * 109.40542 * 119.79597 * 2 1 3 5 5 N 1.48185 * 110.69146 * 80.73763 * 4 2 1 6 6 S 1.65591 * 118.51262 * 138.77438 * 5 4 2 7 7 O 1.42098 * 106.40600 * 336.46017 * 6 5 4 8 8 O 1.42105 * 106.40514 * 203.54391 * 6 5 4 9 9 C 1.76205 * 107.22120 * 90.00212 * 6 5 4 10 10 C 1.38629 * 119.74709 * 89.99392 * 9 6 5 11 11 C 1.37623 * 120.24721 * 179.97438 * 10 9 6 12 12 C 1.40719 * 119.73924 * 0.28068 * 11 10 9 13 13 C 1.41404 * 120.23847 * 179.69838 * 12 11 10 14 14 H 1.07993 * 120.00109 * 28.89495 * 13 12 11 15 15 C 1.39948 * 119.99614 * 208.89549 * 13 12 11 16 16 N 1.30827 * 120.00377 * 11.05208 * 15 13 12 17 17 Si 1.86800 * 119.99752 * 191.05048 * 15 13 12 18 18 H 1.48503 * 109.47048 * 60.00092 * 17 15 13 19 19 H 1.48497 * 109.47020 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47089 * 300.00131 * 17 15 13 21 21 C 1.40716 * 119.51371 * 359.42896 * 12 11 10 22 22 C 1.37619 * 119.74344 * 0.59058 * 21 12 11 23 23 C 1.44456 * 122.97392 * 319.05490 * 5 4 2 24 24 C 1.54323 * 109.63670 * 88.77501 * 23 5 4 25 25 C 1.47681 * 109.65995 * 290.12802 * 24 23 5 26 26 O 1.40521 * 109.40284 * 240.20371 * 2 1 3 27 27 H 1.09006 * 109.47345 * 299.71623 * 1 2 3 28 28 H 1.09003 * 109.47265 * 59.71097 * 1 2 3 29 29 H 1.09000 * 109.47206 * 179.71242 * 1 2 3 30 30 H 1.08993 * 109.46704 * 179.79264 * 3 2 1 31 31 H 1.08993 * 109.47276 * 299.80104 * 3 2 1 32 32 H 1.09003 * 109.46566 * 59.80132 * 3 2 1 33 33 H 1.08998 * 109.23298 * 320.42734 * 4 2 1 34 34 H 1.08991 * 109.23663 * 201.05067 * 4 2 1 35 35 H 1.07998 * 119.87945 * 359.96576 * 10 9 6 36 36 H 1.07994 * 120.13241 * 180.02562 * 11 10 9 37 37 H 0.96994 * 120.00101 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.12490 * 180.29051 * 21 12 11 39 39 H 1.08003 * 119.87471 * 179.69948 * 22 21 12 40 40 H 1.09007 * 109.49560 * 208.61329 * 23 5 4 41 41 H 1.09003 * 109.49858 * 328.69661 * 23 5 4 42 42 H 1.09003 * 109.50631 * 170.03132 * 24 23 5 43 43 H 1.09005 * 109.34709 * 50.12742 * 24 23 5 44 44 H 1.08994 * 108.64773 * 299.65334 * 25 24 23 45 45 H 1.08995 * 108.54019 * 181.72905 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0367 1.4437 0.0000 4 6 2.0427 -0.7232 1.2629 5 7 2.0062 -2.1927 1.0759 6 16 3.2782 -3.0927 1.6363 7 8 4.3935 -2.2145 1.7010 8 8 3.2805 -4.2973 0.8825 9 6 2.9048 -3.5459 3.2976 10 6 2.2229 -4.7258 3.5520 11 6 1.9264 -5.0901 4.8456 12 6 2.3130 -4.2567 5.9115 13 6 2.0081 -4.6176 7.2443 14 1 1.9216 -5.6594 7.5153 15 6 1.8186 -3.6246 8.2121 16 7 1.7079 -2.3720 7.8512 17 14 1.7236 -4.0879 10.0193 18 1 2.9885 -4.7501 10.4276 19 1 1.5200 -2.8632 10.8341 20 1 0.5863 -5.0186 10.2326 21 6 3.0101 -3.0645 5.6417 22 6 3.2955 -2.7201 4.3402 23 6 0.9139 -2.8751 0.4217 24 6 1.1821 -2.9470 -1.0963 25 6 1.0673 -1.5977 -1.6856 26 8 1.9968 -0.6586 -1.1502 27 1 -0.3634 0.5094 0.8926 28 1 -0.3634 0.5183 -0.8874 29 1 -0.3633 -1.0276 -0.0052 30 1 3.1266 1.4462 0.0037 31 1 1.6751 1.9557 -0.8917 32 1 1.6692 1.9577 0.8882 33 1 1.4137 -0.4535 2.1113 34 1 3.0678 -0.4121 1.4636 35 1 1.9232 -5.3615 2.7320 36 1 1.3955 -6.0099 5.0416 37 1 1.5769 -1.6838 8.5221 38 1 3.3156 -2.4199 6.4526 39 1 3.8262 -1.8031 4.1305 40 1 0.8264 -3.8863 0.8194 41 1 -0.0140 -2.3319 0.6008 42 1 0.4540 -3.6100 -1.5636 43 1 2.1869 -3.3334 -1.2676 44 1 0.0575 -1.2262 -1.5116 45 1 1.2293 -1.6741 -2.7607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315390321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:49 Heat of formation + Delta-G solvation = -87.898550 kcal Electronic energy + Delta-G solvation = -28778.354284 eV Core-core repulsion = 24888.093051 eV Total energy + Delta-G solvation = -3890.261233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.29400 -37.58622 -36.59718 -35.45272 -35.05097 -34.08686 -33.99387 -31.11175 -30.23841 -29.49162 -27.68244 -26.73484 -25.80649 -24.76282 -21.51760 -21.35595 -21.15644 -19.73217 -18.33202 -17.62700 -17.55136 -17.16381 -16.62996 -15.73290 -15.46447 -15.44345 -14.79158 -14.34179 -14.11385 -13.73460 -13.43172 -13.35364 -13.20951 -13.18486 -12.74124 -12.44840 -12.33252 -12.24452 -12.13375 -11.91600 -11.89502 -11.80199 -11.62393 -11.40678 -11.28109 -11.24301 -11.20282 -11.00163 -10.90201 -10.55474 -10.39359 -9.98618 -9.75347 -9.60225 -9.53829 -9.48573 -8.60904 -7.91061 -7.71300 -7.08247 -4.80913 1.22728 2.24497 2.88571 2.89232 2.91241 2.93798 3.55086 3.68035 3.80411 4.28049 4.54716 4.60818 4.72142 4.81157 4.88744 4.96118 5.14529 5.30861 5.31844 5.35099 5.42072 5.51174 5.55532 5.60520 5.67366 5.77010 5.83298 5.86909 5.97583 6.02073 6.02863 6.08901 6.11884 6.32721 6.35883 6.66141 6.71362 6.86522 7.02110 7.06832 7.34489 7.38954 7.40063 7.61745 7.76870 7.97396 8.32522 8.51837 8.63878 9.83067 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.003396 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.313542 B = 8242.428667 C = 8812.277321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 C -0.145 4.145 4 C 0.099 3.901 5 N -0.991 5.991 6 S 2.689 3.311 7 O -0.981 6.981 8 O -0.982 6.982 9 C -0.782 4.782 10 C -0.002 4.002 11 C -0.235 4.235 12 C 0.141 3.859 13 C -0.441 4.441 14 H 0.086 0.914 15 C 0.071 3.929 16 N -0.777 5.777 17 Si 0.919 3.081 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.262 1.262 21 C -0.176 4.176 22 C -0.018 4.018 23 C 0.119 3.881 24 C -0.176 4.176 25 C 0.045 3.955 26 O -0.358 6.358 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.288 0.712 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 5.672 -10.756 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.064 3.936 3 C -0.203 4.203 4 C -0.026 4.026 5 N -0.826 5.826 6 S 2.788 3.212 7 O -0.972 6.972 8 O -0.972 6.972 9 C -0.878 4.878 10 C -0.022 4.022 11 C -0.256 4.256 12 C 0.138 3.862 13 C -0.469 4.469 14 H 0.104 0.896 15 C -0.149 4.149 16 N -0.400 5.400 17 Si 0.743 3.257 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.196 4.196 22 C -0.038 4.038 23 C -0.007 4.007 24 C -0.215 4.215 25 C -0.032 4.032 26 O -0.277 6.277 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.774 5.787 -11.277 13.544 hybrid contribution -0.846 -0.258 1.620 1.846 sum -5.620 5.529 -9.657 12.467 Atomic orbital electron populations 1.22907 0.95858 1.03627 1.02950 1.21596 0.93238 0.92653 0.86144 1.21912 1.02603 0.93332 1.02438 1.22503 1.03886 0.78985 0.97226 1.57262 1.37837 1.14966 1.72489 1.01515 0.72677 0.72431 0.74539 1.93457 1.49012 1.66512 1.88176 1.93467 1.86399 1.46155 1.71196 1.29337 1.29602 1.09268 1.19585 1.20174 0.92655 0.92784 0.96631 1.21110 1.09273 1.02820 0.92361 1.17869 0.85249 0.90537 0.92571 1.19882 1.39333 0.94780 0.92860 0.89592 1.26091 0.92166 0.94364 1.02329 1.69777 1.31649 1.01424 1.37147 0.86164 0.80276 0.79194 0.80076 1.18444 1.19940 1.18647 1.21373 1.02980 1.00213 0.95045 1.20278 0.94751 0.95846 0.92926 1.21191 0.90393 0.97484 0.91623 1.22011 1.04330 0.98114 0.97082 1.21681 0.94464 0.89349 0.97666 1.87533 1.43347 1.54573 1.42212 0.91042 0.91680 0.90087 0.91313 0.91836 0.91002 0.90934 0.88255 0.87845 0.88141 0.90087 0.85842 0.87911 0.89894 0.90097 0.89728 0.90217 0.91382 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 6.80 37.16 0.25 -1.63 16 2 C 0.11 1.27 1.09 -89.94 -0.10 1.18 16 3 C -0.15 -1.49 8.73 37.16 0.32 -1.16 16 4 C 0.10 1.45 5.60 -2.44 -0.01 1.43 16 5 N -0.99 -16.06 2.86 -113.07 -0.32 -16.38 16 6 S 2.69 54.10 5.56 -107.50 -0.60 53.50 16 7 O -0.98 -21.79 15.64 -57.17 -0.89 -22.68 16 8 O -0.98 -21.02 15.61 -57.17 -0.89 -21.91 16 9 C -0.78 -17.47 6.00 -39.29 -0.24 -17.70 16 10 C 0.00 -0.05 9.49 -39.66 -0.38 -0.43 16 11 C -0.24 -5.55 9.80 -38.87 -0.38 -5.94 16 12 C 0.14 3.59 5.54 -106.82 -0.59 2.99 16 13 C -0.44 -10.84 9.06 -37.74 -0.34 -11.18 16 14 H 0.09 2.00 7.87 -52.49 -0.41 1.58 16 15 C 0.07 1.64 5.25 -17.34 -0.09 1.55 16 16 N -0.78 -18.45 10.89 55.55 0.60 -17.85 16 17 Si 0.92 17.11 29.57 -169.99 -5.03 12.09 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 21 C -0.18 -4.41 8.66 -38.87 -0.34 -4.74 16 22 C -0.02 -0.41 9.49 -39.66 -0.38 -0.79 16 23 C 0.12 1.63 5.16 -4.44 -0.02 1.60 16 24 C -0.18 -2.16 5.98 -28.61 -0.17 -2.33 16 25 C 0.04 0.50 5.83 34.59 0.20 0.70 16 26 O -0.36 -4.95 9.84 -34.09 -0.34 -5.29 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 29 H 0.08 0.77 3.31 -51.93 -0.17 0.60 16 30 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 34 H 0.10 1.56 6.52 -51.93 -0.34 1.22 16 35 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 36 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 38 H 0.12 3.13 6.27 -52.49 -0.33 2.80 16 39 H 0.10 2.23 7.60 -52.48 -0.40 1.83 16 40 H 0.08 1.16 7.58 -51.92 -0.39 0.76 16 41 H 0.08 0.91 5.25 -51.93 -0.27 0.64 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.18 7.64 -51.93 -0.40 0.78 16 44 H 0.07 0.62 4.51 -51.93 -0.23 0.39 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -30.21 358.84 -10.57 -40.79 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.26 Total: 8.77 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: -2.26 Total: -36.45 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.28 Total: -34.23 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -2.12 Total: -49.87 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 54.10 SS G_CDS: -0.60 Total: 53.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.21 -10.57 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315390321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.112 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds