Wall clock time and date at job start Sat Apr 11 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99880 * 2 1 4 4 C 1.38227 * 120.00030 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99928 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99694 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.48555 * 25.02511 * 6 5 4 8 8 O 1.42906 * 109.48955 * 145.05531 * 6 5 4 9 9 C 1.42903 * 114.10018 * 181.14682 * 8 6 5 10 10 C 1.53097 * 109.41096 * 298.83831 * 9 8 6 11 11 C 1.53179 * 109.16461 * 57.61194 * 10 9 8 12 12 C 1.53090 * 109.48133 * 264.99936 * 6 5 4 13 13 H 1.08999 * 109.52253 * 62.42683 * 12 6 5 14 14 N 1.46506 * 109.52436 * 302.30570 * 12 6 5 15 15 S 1.65597 * 120.00079 * 144.72053 * 14 12 6 16 16 O 1.42094 * 104.27779 * 181.07288 * 15 14 12 17 17 O 1.42104 * 104.27939 * 308.93259 * 15 14 12 18 18 C 1.81403 * 104.44731 * 65.00319 * 15 14 12 19 19 C 1.50703 * 109.46936 * 179.97438 * 18 15 14 20 20 H 1.07993 * 120.00066 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99805 * 180.02562 * 19 18 15 22 22 N 1.31511 * 119.99946 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47402 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47018 * 120.00096 * 23 21 19 26 26 H 1.48497 * 109.47032 * 239.99762 * 23 21 19 27 27 C 1.38230 * 119.99892 * 0.27189 * 5 4 3 28 28 C 1.38228 * 120.00212 * 359.51893 * 27 5 4 29 29 H 1.08993 * 109.47046 * 89.99930 * 1 2 3 30 30 H 1.09005 * 109.47162 * 210.00215 * 1 2 3 31 31 H 1.09003 * 109.47154 * 329.99564 * 1 2 3 32 32 H 1.08001 * 119.99854 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.00299 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.48087 * 58.81781 * 9 8 6 35 35 H 1.08993 * 109.48177 * 178.85721 * 9 8 6 36 36 H 1.09001 * 109.51909 * 177.50996 * 10 9 8 37 37 H 1.08994 * 109.52141 * 297.63836 * 10 9 8 38 38 H 1.08998 * 109.54295 * 183.15305 * 11 10 9 39 39 H 1.08996 * 109.54427 * 62.88127 * 11 10 9 40 40 H 0.97005 * 119.99811 * 325.00031 * 14 12 6 41 41 H 1.09003 * 109.46906 * 299.99935 * 18 15 14 42 42 H 1.09000 * 109.47298 * 59.99821 * 18 15 14 43 43 H 0.97004 * 120.00080 * 180.02562 * 22 21 19 44 44 H 1.08006 * 119.99709 * 179.72322 * 27 5 4 45 45 H 1.08001 * 120.00621 * 180.27323 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 1 6.1418 0.9314 0.4373 8 8 6.2549 -1.1038 0.7753 9 6 7.6790 -1.1829 0.8637 10 6 8.2670 -1.3568 -0.5392 11 6 7.8209 -0.1858 -1.4201 12 6 6.2904 -0.1263 -1.4345 13 1 5.9639 0.7369 -2.0146 14 7 5.7585 -1.3509 -2.0377 15 16 5.3640 -1.3781 -3.6457 16 8 4.8687 -2.6921 -3.8629 17 8 4.5285 -0.2420 -3.8209 18 6 6.9450 -1.1439 -4.5037 19 6 6.7143 -1.1510 -5.9929 20 1 5.7163 -1.2828 -6.3841 21 6 7.7773 -0.9893 -6.8560 22 7 8.9925 -0.8283 -6.3796 23 14 7.4912 -0.9975 -8.7019 24 1 6.0453 -1.1934 -8.9779 25 1 7.9344 0.2979 -9.2773 26 1 8.2666 -2.1039 -9.3181 27 6 3.5805 -1.1970 -0.0035 28 6 2.1983 -1.1971 0.0003 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1326 0.0010 34 1 8.0670 -0.2670 1.3094 35 1 7.9580 -2.0353 1.4830 36 1 9.3552 -1.3731 -0.4785 37 1 7.9121 -2.2933 -0.9693 38 1 8.1898 -0.3321 -2.4353 39 1 8.2183 0.7457 -1.0171 40 1 5.6336 -2.1446 -1.4941 41 1 7.3811 -0.1897 -4.2078 42 1 7.6259 -1.9525 -4.2380 43 1 9.7403 -0.7141 -6.9868 44 1 4.1206 -2.1324 -0.0072 45 1 1.6582 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331349475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:00 Heat of formation + Delta-G solvation = -110.775638 kcal Electronic energy + Delta-G solvation = -28709.629946 eV Core-core repulsion = 24818.376688 eV Total energy + Delta-G solvation = -3891.253258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.25062 -38.63885 -36.09209 -35.04146 -34.86064 -33.63491 -33.34132 -31.80342 -30.77789 -29.47377 -29.03968 -26.89298 -24.49927 -23.54541 -23.22279 -22.49955 -20.77654 -20.04776 -18.62106 -17.36946 -16.78204 -16.64162 -16.31048 -15.71193 -15.26302 -15.17659 -15.02450 -14.68718 -14.51564 -14.32933 -14.18056 -13.79320 -13.61258 -13.27871 -12.87155 -12.71949 -12.47896 -12.41816 -12.22292 -12.06998 -11.79245 -11.45388 -11.42007 -11.21296 -11.11061 -11.07773 -11.02032 -10.93945 -10.84493 -10.76942 -10.61602 -10.38547 -9.81425 -9.68104 -9.33039 -8.82801 -8.73430 -8.69204 -8.34774 -6.35507 -4.45379 1.35381 1.42712 1.57210 3.18390 3.25677 3.32995 3.52204 3.73750 3.92395 4.22940 4.64732 4.78232 4.82231 4.88060 4.94513 4.97466 4.98081 5.00883 5.10962 5.15969 5.21244 5.32568 5.36761 5.44419 5.54143 5.58078 5.60245 5.65243 5.78699 5.80433 5.87169 5.95599 6.11383 6.14788 6.19920 6.28346 6.41496 6.51989 6.67118 6.67620 6.70041 6.76677 7.12181 7.20229 7.43930 7.52381 7.73739 8.56632 9.22366 10.76217 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.004169 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.317318 B = 6714.826690 C = 8133.908244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.121 4.121 4 C -0.103 4.103 5 C -0.078 4.078 6 C 0.133 3.867 7 H 0.075 0.925 8 O -0.372 6.372 9 C 0.061 3.939 10 C -0.154 4.154 11 C -0.151 4.151 12 C 0.131 3.869 13 H 0.101 0.899 14 N -1.115 6.115 15 S 2.580 3.420 16 O -0.982 6.982 17 O -0.978 6.978 18 C -0.421 4.421 19 C -0.533 4.533 20 H 0.069 0.931 21 C 0.077 3.923 22 N -0.878 5.878 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.082 4.082 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.410 0.590 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.267 0.733 44 H 0.125 0.875 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 3.016 16.912 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.078 4.078 6 C 0.074 3.926 7 H 0.093 0.907 8 O -0.291 6.291 9 C -0.015 4.015 10 C -0.191 4.191 11 C -0.190 4.190 12 C 0.022 3.978 13 H 0.119 0.881 14 N -0.871 5.871 15 S 2.680 3.320 16 O -0.973 6.973 17 O -0.968 6.968 18 C -0.557 4.557 19 C -0.573 4.573 20 H 0.087 0.913 21 C -0.129 4.129 22 N -0.515 5.515 23 Si 0.729 3.271 24 H -0.190 1.190 25 H -0.203 1.203 26 H -0.203 1.203 27 C -0.100 4.100 28 C -0.143 4.143 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.244 0.756 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.993 2.957 16.541 17.840 hybrid contribution 0.991 -0.075 -0.897 1.339 sum -5.001 2.882 15.644 16.675 Atomic orbital electron populations 1.20784 0.91457 1.02374 1.02386 1.19909 0.95947 0.93338 0.99560 1.20886 0.93909 0.97422 1.01707 1.20856 0.94300 0.97082 0.99918 1.19384 0.93157 0.93786 1.01473 1.21046 0.90859 0.90157 0.90537 0.90680 1.87925 1.21185 1.48623 1.71346 1.22616 0.80750 1.01533 0.96634 1.22124 1.01045 1.00156 0.95813 1.22303 0.95139 0.98790 1.02760 1.21272 0.93197 0.88602 0.94713 0.88133 1.55775 1.82653 1.19414 1.29265 1.05928 0.79412 0.73915 0.72765 1.93479 1.80175 1.39470 1.84152 1.93480 1.65782 1.52933 1.84620 1.27831 1.13674 1.06649 1.07510 1.20373 0.95247 1.54137 0.87503 0.91334 1.24908 0.94659 0.93479 0.99875 1.69950 0.99028 1.46809 1.35668 0.86341 0.79165 0.78084 0.83533 1.18981 1.20321 1.20329 1.20933 0.93714 0.97970 0.97390 1.21041 0.94284 0.97513 1.01496 0.91105 0.91731 0.91766 0.86156 0.86044 0.93270 0.88904 0.90776 0.90458 0.89062 0.90874 0.75641 0.89785 0.89708 0.92318 0.85700 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.09 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.12 -1.54 9.70 -39.59 -0.38 -1.92 16 4 C -0.10 -1.36 9.68 -39.59 -0.38 -1.74 16 5 C -0.08 -1.09 4.81 -104.62 -0.50 -1.60 16 6 C 0.13 1.69 2.61 -27.84 -0.07 1.62 16 7 H 0.08 0.80 8.05 -51.93 -0.42 0.39 16 8 O -0.37 -4.62 9.16 -35.23 -0.32 -4.94 16 9 C 0.06 0.62 6.84 37.21 0.25 0.87 16 10 C -0.15 -1.74 5.96 -26.59 -0.16 -1.90 16 11 C -0.15 -1.95 5.71 -26.54 -0.15 -2.10 16 12 C 0.13 1.88 2.52 -67.79 -0.17 1.71 16 13 H 0.10 1.53 7.48 -51.93 -0.39 1.14 16 14 N -1.12 -18.45 3.80 -4.77 -0.02 -18.46 16 15 S 2.58 55.81 5.36 -107.50 -0.58 55.23 16 16 O -0.98 -23.85 18.08 -57.54 -1.04 -24.89 16 17 O -0.98 -23.47 17.39 -57.54 -1.00 -24.47 16 18 C -0.42 -10.02 4.94 36.01 0.18 -9.84 16 19 C -0.53 -14.71 9.13 -34.44 -0.31 -15.03 16 20 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 21 C 0.08 2.10 5.46 -17.82 -0.10 2.01 16 22 N -0.88 -24.36 13.29 55.43 0.74 -23.62 16 23 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 C -0.08 -1.19 8.41 -39.59 -0.33 -1.52 16 28 C -0.13 -1.71 9.70 -39.59 -0.38 -2.10 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.96 7.65 -51.93 -0.40 0.56 16 38 H 0.09 1.38 5.84 -51.93 -0.30 1.08 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.41 6.24 7.17 -34.47 -0.25 5.99 16 41 H 0.08 1.94 6.89 -51.92 -0.36 1.58 16 42 H 0.08 2.01 8.14 -51.92 -0.42 1.58 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.13 1.74 6.78 -52.48 -0.36 1.38 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -34.01 374.39 -11.03 -45.04 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.65 Total: 8.59 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -2.78 Total: -34.02 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.72 Total: -42.09 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -2.36 Total: -54.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.58 Total: 55.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.01 -11.03 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331349475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.739 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds