Wall clock time and date at job start Sat Apr 11 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99880 * 2 1 4 4 C 1.38227 * 120.00030 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99928 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99694 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.48555 * 25.02511 * 6 5 4 8 8 O 1.42906 * 109.48955 * 145.05531 * 6 5 4 9 9 C 1.42903 * 114.10018 * 181.14682 * 8 6 5 10 10 C 1.53097 * 109.41096 * 298.83831 * 9 8 6 11 11 C 1.53179 * 109.16461 * 57.61194 * 10 9 8 12 12 C 1.53090 * 109.48133 * 264.99936 * 6 5 4 13 13 H 1.08999 * 109.52253 * 62.42683 * 12 6 5 14 14 N 1.46506 * 109.52436 * 302.30570 * 12 6 5 15 15 S 1.65597 * 120.00079 * 144.72053 * 14 12 6 16 16 O 1.42094 * 104.27779 * 181.07288 * 15 14 12 17 17 O 1.42104 * 104.27939 * 308.93259 * 15 14 12 18 18 C 1.81403 * 104.44731 * 65.00319 * 15 14 12 19 19 C 1.50703 * 109.46936 * 179.97438 * 18 15 14 20 20 H 1.07993 * 120.00066 * 0.02562 * 19 18 15 21 21 C 1.37880 * 119.99805 * 180.02562 * 19 18 15 22 22 N 1.31511 * 119.99946 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47402 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47018 * 120.00096 * 23 21 19 26 26 H 1.48497 * 109.47032 * 239.99762 * 23 21 19 27 27 C 1.38230 * 119.99892 * 0.27189 * 5 4 3 28 28 C 1.38228 * 120.00212 * 359.51893 * 27 5 4 29 29 H 1.08993 * 109.47046 * 89.99930 * 1 2 3 30 30 H 1.09005 * 109.47162 * 210.00215 * 1 2 3 31 31 H 1.09003 * 109.47154 * 329.99564 * 1 2 3 32 32 H 1.08001 * 119.99854 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.00299 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.48087 * 58.81781 * 9 8 6 35 35 H 1.08993 * 109.48177 * 178.85721 * 9 8 6 36 36 H 1.09001 * 109.51909 * 177.50996 * 10 9 8 37 37 H 1.08994 * 109.52141 * 297.63836 * 10 9 8 38 38 H 1.08998 * 109.54295 * 183.15305 * 11 10 9 39 39 H 1.08996 * 109.54427 * 62.88127 * 11 10 9 40 40 H 0.97005 * 119.99811 * 325.00031 * 14 12 6 41 41 H 1.09003 * 109.46906 * 299.99935 * 18 15 14 42 42 H 1.09000 * 109.47298 * 59.99821 * 18 15 14 43 43 H 0.97004 * 120.00080 * 180.02562 * 22 21 19 44 44 H 1.08006 * 119.99709 * 179.72322 * 27 5 4 45 45 H 1.08001 * 120.00621 * 180.27323 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 1 6.1418 0.9314 0.4373 8 8 6.2549 -1.1038 0.7753 9 6 7.6790 -1.1829 0.8637 10 6 8.2670 -1.3568 -0.5392 11 6 7.8209 -0.1858 -1.4201 12 6 6.2904 -0.1263 -1.4345 13 1 5.9639 0.7369 -2.0146 14 7 5.7585 -1.3509 -2.0377 15 16 5.3640 -1.3781 -3.6457 16 8 4.8687 -2.6921 -3.8629 17 8 4.5285 -0.2420 -3.8209 18 6 6.9450 -1.1439 -4.5037 19 6 6.7143 -1.1510 -5.9929 20 1 5.7163 -1.2828 -6.3841 21 6 7.7773 -0.9893 -6.8560 22 7 8.9925 -0.8283 -6.3796 23 14 7.4912 -0.9975 -8.7019 24 1 6.0453 -1.1934 -8.9779 25 1 7.9344 0.2979 -9.2773 26 1 8.2666 -2.1039 -9.3181 27 6 3.5805 -1.1970 -0.0035 28 6 2.1983 -1.1971 0.0003 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1326 0.0010 34 1 8.0670 -0.2670 1.3094 35 1 7.9580 -2.0353 1.4830 36 1 9.3552 -1.3731 -0.4785 37 1 7.9121 -2.2933 -0.9693 38 1 8.1898 -0.3321 -2.4353 39 1 8.2183 0.7457 -1.0171 40 1 5.6336 -2.1446 -1.4941 41 1 7.3811 -0.1897 -4.2078 42 1 7.6259 -1.9525 -4.2380 43 1 9.7403 -0.7141 -6.9868 44 1 4.1206 -2.1324 -0.0072 45 1 1.6582 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331349475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:59 Heat of formation + Delta-G solvation = -133.471750 kcal Electronic energy + Delta-G solvation = -28710.614123 eV Core-core repulsion = 24818.376688 eV Total energy + Delta-G solvation = -3892.237435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24949 -39.59754 -37.96663 -36.83889 -36.12504 -35.42590 -34.52555 -32.86406 -31.76004 -31.05169 -30.52654 -27.81930 -25.72945 -25.25034 -24.22126 -23.50900 -21.76821 -21.18392 -20.16630 -19.17984 -18.30611 -17.76695 -17.69769 -17.27849 -16.72043 -16.37546 -16.19235 -16.01025 -15.88891 -15.47854 -15.40565 -14.83429 -14.53397 -14.48400 -14.23845 -14.10432 -13.87734 -13.70972 -13.43750 -13.35791 -13.04943 -12.99883 -12.96099 -12.84455 -12.75733 -12.59505 -12.47248 -12.35606 -12.18215 -11.83486 -11.76356 -11.74128 -11.27495 -11.18204 -10.79066 -10.65000 -10.14085 -9.75601 -9.34351 -8.42368 -6.59942 -0.41464 0.41855 0.56026 1.35821 1.36924 1.50706 2.01750 2.30850 2.73009 2.91279 2.93818 3.01103 3.46790 3.67398 3.77008 3.97127 3.99788 4.03561 4.09222 4.16892 4.24058 4.27071 4.39803 4.54612 4.60192 4.66915 4.68119 4.72412 4.78018 4.83753 4.88442 4.93464 4.95789 5.00020 5.11037 5.22796 5.24869 5.30648 5.33847 5.42023 5.53343 5.67708 5.72532 5.73316 6.16072 6.16617 6.32765 6.49289 7.11421 8.69876 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.004169 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.317318 B = 6714.826690 C = 8133.908244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.096 4.096 6 C 0.142 3.858 7 H 0.103 0.897 8 O -0.383 6.383 9 C 0.061 3.939 10 C -0.153 4.153 11 C -0.150 4.150 12 C 0.123 3.877 13 H 0.091 0.909 14 N -1.099 6.099 15 S 2.612 3.388 16 O -1.011 7.011 17 O -1.001 7.001 18 C -0.425 4.425 19 C -0.570 4.570 20 H 0.058 0.942 21 C 0.031 3.969 22 N -0.902 5.902 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.265 1.265 26 H -0.266 1.266 27 C -0.103 4.103 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.418 0.582 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.274 0.726 44 H 0.121 0.879 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 4.014 17.944 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.096 4.096 6 C 0.082 3.918 7 H 0.121 0.879 8 O -0.302 6.302 9 C -0.015 4.015 10 C -0.191 4.191 11 C -0.189 4.189 12 C 0.015 3.985 13 H 0.109 0.891 14 N -0.859 5.859 15 S 2.710 3.290 16 O -1.001 7.001 17 O -0.991 6.991 18 C -0.559 4.559 19 C -0.608 4.608 20 H 0.076 0.924 21 C -0.173 4.173 22 N -0.538 5.538 23 Si 0.782 3.218 24 H -0.191 1.191 25 H -0.189 1.189 26 H -0.191 1.191 27 C -0.121 4.121 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.254 0.746 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.859 3.950 17.575 18.942 hybrid contribution 0.964 -0.375 -1.130 1.532 sum -4.895 3.575 16.445 17.526 Atomic orbital electron populations 1.20830 0.89448 1.03845 1.02704 1.20320 0.97638 0.93144 0.98779 1.21283 0.94153 0.98416 1.01091 1.21231 0.94870 0.97739 0.99418 1.19642 0.94042 0.94005 1.01939 1.21004 0.90202 0.91443 0.89125 0.87940 1.87929 1.22630 1.48673 1.70986 1.22785 0.79454 1.03416 0.95884 1.22137 1.02078 0.98544 0.96323 1.22287 0.93849 1.00945 1.01831 1.21553 0.94307 0.86825 0.95816 0.89142 1.55267 1.82555 1.20892 1.27148 1.04707 0.78102 0.72638 0.73545 1.93427 1.80528 1.40825 1.85360 1.93442 1.66177 1.53802 1.85679 1.27829 1.15262 1.06499 1.06351 1.20754 0.95202 1.55094 0.89785 0.92369 1.25735 0.94429 0.92857 1.04266 1.70009 0.99639 1.46883 1.37297 0.85483 0.79071 0.78935 0.78349 1.19086 1.18927 1.19119 1.21081 0.94330 0.98259 0.98465 1.21325 0.94393 0.98610 1.01979 0.91207 0.90684 0.89979 0.83849 0.83850 0.91087 0.87245 0.89243 0.92135 0.91791 0.88147 0.74600 0.89548 0.90229 0.91699 0.86116 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.30 16 2 C -0.10 -2.44 5.88 -19.86 -0.12 -2.56 16 3 C -0.13 -3.14 9.70 22.27 0.22 -2.93 16 4 C -0.11 -2.84 9.68 22.27 0.22 -2.63 16 5 C -0.10 -2.61 4.81 -19.87 -0.10 -2.71 16 6 C 0.14 3.35 2.61 29.88 0.08 3.43 16 7 H 0.10 1.88 8.05 -2.39 -0.02 1.86 16 8 O -0.38 -8.81 9.16 -148.98 -1.36 -10.17 16 9 C 0.06 1.06 6.84 72.01 0.49 1.55 16 10 C -0.15 -3.23 5.96 30.69 0.18 -3.05 16 11 C -0.15 -3.71 5.71 30.71 0.18 -3.53 16 12 C 0.12 3.45 2.52 45.08 0.11 3.56 16 13 H 0.09 2.73 7.48 -2.39 -0.02 2.71 16 14 N -1.10 -36.67 3.80 -169.00 -0.64 -37.32 16 15 S 2.61 115.71 5.36 -56.49 -0.30 115.41 16 16 O -1.01 -50.29 18.08 -127.65 -2.31 -52.60 16 17 O -1.00 -48.90 17.39 -127.65 -2.22 -51.12 16 18 C -0.43 -20.83 4.94 71.24 0.35 -20.47 16 19 C -0.57 -32.13 9.13 25.60 0.23 -31.89 16 20 H 0.06 3.30 7.71 -2.91 -0.02 3.28 16 21 C 0.03 1.70 5.46 84.66 0.46 2.16 16 22 N -0.90 -50.26 13.29 21.45 0.28 -49.98 16 23 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 C -0.10 -2.99 8.41 22.27 0.19 -2.80 16 28 C -0.15 -3.95 9.70 22.27 0.22 -3.73 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.17 8.09 -2.38 -0.02 1.16 16 31 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 38 H 0.06 1.95 5.84 -2.39 -0.01 1.94 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.42 12.87 7.17 -96.74 -0.69 12.17 16 41 H 0.09 4.12 6.89 -2.39 -0.02 4.11 16 42 H 0.08 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.12 3.42 6.78 -2.91 -0.02 3.40 16 45 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -73.15 374.39 -0.80 -73.95 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.30 Total: 34.00 kcal Atomic # 6 Polarization: -70.33 SS G_CDS: 3.43 Total: -66.90 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -0.36 Total: -87.29 kcal Atomic # 8 Polarization: -108.00 SS G_CDS: -5.89 Total: -113.89 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 115.71 SS G_CDS: -0.30 Total: 115.41 kcal Total: -73.15 -0.80 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331349475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.526 kcal (2) G-P(sol) polarization free energy of solvation -73.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds