Wall clock time and date at job start Sat Apr 11 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99700 * 2 1 4 4 C 1.38236 * 119.99587 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00024 * 359.95193 * 4 3 2 6 6 C 1.50706 * 119.99498 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.48988 * 25.03060 * 6 5 4 8 8 O 1.42907 * 109.47686 * 145.06140 * 6 5 4 9 9 C 1.42905 * 114.09729 * 181.14246 * 8 6 5 10 10 C 1.53101 * 109.41031 * 298.83854 * 9 8 6 11 11 C 1.53173 * 109.16203 * 57.61046 * 10 9 8 12 12 C 1.53087 * 109.48077 * 265.00003 * 6 5 4 13 13 H 1.09006 * 109.57723 * 302.34978 * 12 6 5 14 14 N 1.46497 * 109.52273 * 62.50451 * 12 6 5 15 15 S 1.65599 * 120.00110 * 214.68295 * 14 12 6 16 16 O 1.42105 * 104.27797 * 181.07392 * 15 14 12 17 17 O 1.42101 * 104.27901 * 308.93100 * 15 14 12 18 18 C 1.81397 * 104.44825 * 65.00280 * 15 14 12 19 19 C 1.50700 * 109.47317 * 179.97438 * 18 15 14 20 20 H 1.08000 * 119.99821 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00285 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00355 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46664 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47066 * 119.99887 * 23 21 19 26 26 H 1.48494 * 109.47030 * 240.00646 * 23 21 19 27 27 C 1.38229 * 120.00143 * 0.27629 * 5 4 3 28 28 C 1.38233 * 120.00088 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46977 * 90.00705 * 1 2 3 30 30 H 1.08999 * 109.47392 * 210.00074 * 1 2 3 31 31 H 1.08991 * 109.47477 * 330.00513 * 1 2 3 32 32 H 1.07994 * 120.00149 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.99948 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47866 * 178.85718 * 9 8 6 35 35 H 1.09001 * 109.48191 * 58.81714 * 9 8 6 36 36 H 1.08996 * 109.51865 * 297.70347 * 10 9 8 37 37 H 1.09000 * 109.51442 * 177.51251 * 10 9 8 38 38 H 1.09003 * 109.54234 * 183.14665 * 11 10 9 39 39 H 1.09000 * 109.54570 * 62.88553 * 11 10 9 40 40 H 0.96999 * 119.99844 * 34.69021 * 14 12 6 41 41 H 1.09004 * 109.47032 * 299.99803 * 18 15 14 42 42 H 1.09000 * 109.47124 * 60.00075 * 18 15 14 43 43 H 0.97001 * 120.00225 * 179.97438 * 22 21 19 44 44 H 1.08006 * 120.00029 * 179.72790 * 27 5 4 45 45 H 1.07996 * 120.00014 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0001 6 6 5.7787 0.0001 -0.0001 7 1 6.1423 0.9313 0.4343 8 8 6.2553 -1.1040 0.7720 9 6 7.6794 -1.1834 0.8593 10 6 8.2663 -1.3573 -0.5440 11 6 7.8198 -0.1861 -1.4244 12 6 6.2892 -0.1262 -1.4378 13 1 5.8930 -1.0367 -1.8874 14 7 5.8515 1.0349 -2.2165 15 16 5.4638 0.8600 -3.8170 16 8 5.1172 2.1719 -4.2390 17 8 6.5804 0.1816 -4.3759 18 6 4.0024 -0.2146 -3.8139 19 6 3.5488 -0.4498 -5.2316 20 1 4.0862 0.0017 -6.0525 21 6 2.4483 -1.2421 -5.4809 22 7 1.7942 -1.7923 -4.4815 23 14 1.8864 -1.5342 -7.2384 24 1 2.7852 -0.8094 -8.1723 25 1 1.9314 -2.9881 -7.5372 26 1 0.4966 -1.0377 -7.4027 27 6 3.5805 -1.1971 -0.0048 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8899 0.5137 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1325 -0.0010 34 1 7.9586 -2.0360 1.4783 35 1 8.0679 -0.2676 1.3049 36 1 7.9100 -2.2931 -0.9744 37 1 9.3546 -1.3737 -0.4841 38 1 8.1879 -0.3322 -2.4399 39 1 8.2176 0.7454 -1.0216 40 1 5.7887 1.9061 -1.7947 41 1 4.2536 -1.1682 -3.3495 42 1 3.2009 0.2638 -3.2510 43 1 1.0197 -2.3495 -4.6568 44 1 4.1206 -2.1324 -0.0089 45 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331349476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:04 Heat of formation + Delta-G solvation = -111.213451 kcal Electronic energy + Delta-G solvation = -29044.192411 eV Core-core repulsion = 25152.920169 eV Total energy + Delta-G solvation = -3891.272243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.10988 -38.46776 -36.14136 -35.27803 -34.92944 -33.50304 -33.30859 -31.88236 -30.59507 -29.20107 -28.98500 -26.76074 -24.31454 -23.49809 -22.98763 -22.44465 -20.62849 -20.24111 -18.79858 -17.29261 -16.85775 -16.51622 -16.14789 -15.89354 -15.38800 -14.99047 -14.73963 -14.46853 -14.40769 -14.27827 -14.11785 -14.01432 -13.39401 -13.08415 -13.03554 -12.63892 -12.48048 -12.12692 -12.00167 -11.78211 -11.73811 -11.44634 -11.40035 -11.28266 -11.18627 -11.08365 -11.03148 -10.91869 -10.76018 -10.70840 -10.60874 -10.42538 -9.78458 -9.74643 -9.31532 -8.77806 -8.68115 -8.53837 -8.16560 -6.29113 -4.39799 1.34919 1.61244 1.78117 3.20429 3.27619 3.34560 3.45343 3.79931 4.07321 4.25774 4.68114 4.77398 4.84954 4.89458 4.93441 5.01663 5.04872 5.12235 5.18692 5.25336 5.28280 5.34932 5.41773 5.53414 5.63059 5.68980 5.76094 5.81739 5.86644 5.88755 5.99770 6.04277 6.07206 6.29576 6.35328 6.38004 6.43367 6.70096 6.72366 6.81647 6.85618 6.94919 7.21134 7.33749 7.41635 7.47206 7.78513 8.61511 9.27156 10.81525 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.005770 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.818331 B = 4851.253048 C = 6604.166501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.122 4.122 4 C -0.105 4.105 5 C -0.089 4.089 6 C 0.134 3.866 7 H 0.069 0.931 8 O -0.369 6.369 9 C 0.059 3.941 10 C -0.156 4.156 11 C -0.141 4.141 12 C 0.137 3.863 13 H 0.094 0.906 14 N -1.120 6.120 15 S 2.578 3.422 16 O -0.982 6.982 17 O -0.981 6.981 18 C -0.411 4.411 19 C -0.534 4.534 20 H 0.067 0.933 21 C 0.079 3.921 22 N -0.871 5.871 23 Si 0.900 3.100 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.083 4.083 28 C -0.108 4.108 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.407 0.593 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.266 0.734 44 H 0.124 0.876 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 1.684 14.308 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.123 4.123 5 C -0.089 4.089 6 C 0.074 3.926 7 H 0.087 0.913 8 O -0.287 6.287 9 C -0.018 4.018 10 C -0.194 4.194 11 C -0.181 4.181 12 C 0.028 3.972 13 H 0.112 0.888 14 N -0.875 5.875 15 S 2.679 3.321 16 O -0.973 6.973 17 O -0.971 6.971 18 C -0.547 4.547 19 C -0.574 4.574 20 H 0.085 0.915 21 C -0.128 4.128 22 N -0.506 5.506 23 Si 0.726 3.274 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.101 4.101 28 C -0.126 4.126 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.239 0.761 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.249 1.678 13.664 14.733 hybrid contribution -0.600 -0.026 -0.539 0.807 sum 4.649 1.652 13.125 14.022 Atomic orbital electron populations 1.20784 0.91559 1.01948 1.02749 1.19883 0.95963 0.93265 0.98564 1.20880 0.93865 0.97469 1.01815 1.20771 0.94207 0.96816 1.00538 1.19340 0.92762 0.93914 1.02851 1.21052 0.91196 0.89941 0.90364 0.91309 1.87981 1.20959 1.48604 1.71204 1.22629 0.81001 1.01662 0.96463 1.22228 1.01215 0.99899 0.96073 1.22201 0.95352 0.98368 1.02150 1.21231 0.94297 0.89430 0.92211 0.88756 1.55848 1.84637 1.15618 1.31347 1.06023 0.78247 0.76165 0.71706 1.93482 1.86022 1.38231 1.79530 1.93466 1.50965 1.76788 1.75891 1.27645 1.11822 1.09408 1.05839 1.20329 1.14908 1.33677 0.88447 0.91461 1.24880 0.95475 0.94413 0.97986 1.69980 1.18853 1.30858 1.30943 0.86389 0.78885 0.78369 0.83738 1.19078 1.20402 1.20397 1.20892 0.93903 0.97720 0.97626 1.20971 0.94107 0.97510 1.00051 0.90649 0.91890 0.92063 0.86290 0.86451 0.88703 0.93220 0.90513 0.90603 0.89300 0.91514 0.76129 0.90054 0.89519 0.92464 0.85761 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 2 C -0.08 -1.17 5.88 -104.62 -0.62 -1.78 16 3 C -0.12 -1.78 9.70 -39.58 -0.38 -2.17 16 4 C -0.11 -1.50 9.49 -39.58 -0.38 -1.88 16 5 C -0.09 -1.32 4.72 -104.62 -0.49 -1.82 16 6 C 0.13 1.79 2.48 -27.84 -0.07 1.72 16 7 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 8 O -0.37 -4.82 9.56 -35.23 -0.34 -5.16 16 9 C 0.06 0.59 6.84 37.21 0.25 0.85 16 10 C -0.16 -1.66 6.14 -26.59 -0.16 -1.82 16 11 C -0.14 -1.85 5.64 -26.55 -0.15 -2.00 16 12 C 0.14 2.04 2.16 -67.80 -0.15 1.90 16 13 H 0.09 1.57 7.16 -51.93 -0.37 1.20 16 14 N -1.12 -18.15 4.85 -4.77 -0.02 -18.18 16 15 S 2.58 55.58 5.30 -107.50 -0.57 55.01 16 16 O -0.98 -23.55 18.08 -57.54 -1.04 -24.59 16 17 O -0.98 -23.17 17.18 -57.54 -0.99 -24.16 16 18 C -0.41 -10.00 5.72 36.01 0.21 -9.79 16 19 C -0.53 -14.78 9.13 -34.44 -0.31 -15.09 16 20 H 0.07 1.85 7.71 -52.49 -0.40 1.45 16 21 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 22 N -0.87 -24.09 13.29 55.43 0.74 -23.35 16 23 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C -0.08 -1.33 9.35 -39.59 -0.37 -1.70 16 28 C -0.11 -1.72 9.70 -39.58 -0.38 -2.10 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.35 7.50 -51.93 -0.39 0.96 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.41 5.57 8.80 -34.47 -0.30 5.27 16 41 H 0.08 1.98 7.44 -51.92 -0.39 1.59 16 42 H 0.09 2.15 8.14 -51.92 -0.42 1.73 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.12 1.91 7.64 -52.48 -0.40 1.51 16 45 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -33.40 381.46 -11.11 -44.52 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.88 Total: 8.92 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: -2.74 Total: -34.73 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.71 Total: -41.53 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -2.37 Total: -53.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 55.58 SS G_CDS: -0.57 Total: 55.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.40 -11.11 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331349476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.696 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds