Wall clock time and date at job start Sat Apr 11 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38239 * 119.99700 * 2 1 4 4 C 1.38236 * 119.99587 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00024 * 359.95193 * 4 3 2 6 6 C 1.50706 * 119.99498 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.48988 * 25.03060 * 6 5 4 8 8 O 1.42907 * 109.47686 * 145.06140 * 6 5 4 9 9 C 1.42905 * 114.09729 * 181.14246 * 8 6 5 10 10 C 1.53101 * 109.41031 * 298.83854 * 9 8 6 11 11 C 1.53173 * 109.16203 * 57.61046 * 10 9 8 12 12 C 1.53087 * 109.48077 * 265.00003 * 6 5 4 13 13 H 1.09006 * 109.57723 * 302.34978 * 12 6 5 14 14 N 1.46497 * 109.52273 * 62.50451 * 12 6 5 15 15 S 1.65599 * 120.00110 * 214.68295 * 14 12 6 16 16 O 1.42105 * 104.27797 * 181.07392 * 15 14 12 17 17 O 1.42101 * 104.27901 * 308.93100 * 15 14 12 18 18 C 1.81397 * 104.44825 * 65.00280 * 15 14 12 19 19 C 1.50700 * 109.47317 * 179.97438 * 18 15 14 20 20 H 1.08000 * 119.99821 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00285 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00355 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46664 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47066 * 119.99887 * 23 21 19 26 26 H 1.48494 * 109.47030 * 240.00646 * 23 21 19 27 27 C 1.38229 * 120.00143 * 0.27629 * 5 4 3 28 28 C 1.38233 * 120.00088 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46977 * 90.00705 * 1 2 3 30 30 H 1.08999 * 109.47392 * 210.00074 * 1 2 3 31 31 H 1.08991 * 109.47477 * 330.00513 * 1 2 3 32 32 H 1.07994 * 120.00149 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.99948 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47866 * 178.85718 * 9 8 6 35 35 H 1.09001 * 109.48191 * 58.81714 * 9 8 6 36 36 H 1.08996 * 109.51865 * 297.70347 * 10 9 8 37 37 H 1.09000 * 109.51442 * 177.51251 * 10 9 8 38 38 H 1.09003 * 109.54234 * 183.14665 * 11 10 9 39 39 H 1.09000 * 109.54570 * 62.88553 * 11 10 9 40 40 H 0.96999 * 119.99844 * 34.69021 * 14 12 6 41 41 H 1.09004 * 109.47032 * 299.99803 * 18 15 14 42 42 H 1.09000 * 109.47124 * 60.00075 * 18 15 14 43 43 H 0.97001 * 120.00225 * 179.97438 * 22 21 19 44 44 H 1.08006 * 120.00029 * 179.72790 * 27 5 4 45 45 H 1.07996 * 120.00014 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2716 0.0000 -0.0001 6 6 5.7787 0.0001 -0.0001 7 1 6.1423 0.9313 0.4343 8 8 6.2553 -1.1040 0.7720 9 6 7.6794 -1.1834 0.8593 10 6 8.2663 -1.3573 -0.5440 11 6 7.8198 -0.1861 -1.4244 12 6 6.2892 -0.1262 -1.4378 13 1 5.8930 -1.0367 -1.8874 14 7 5.8515 1.0349 -2.2165 15 16 5.4638 0.8600 -3.8170 16 8 5.1172 2.1719 -4.2390 17 8 6.5804 0.1816 -4.3759 18 6 4.0024 -0.2146 -3.8139 19 6 3.5488 -0.4498 -5.2316 20 1 4.0862 0.0017 -6.0525 21 6 2.4483 -1.2421 -5.4809 22 7 1.7942 -1.7923 -4.4815 23 14 1.8864 -1.5342 -7.2384 24 1 2.7852 -0.8094 -8.1723 25 1 1.9314 -2.9881 -7.5372 26 1 0.4966 -1.0377 -7.4027 27 6 3.5805 -1.1971 -0.0048 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8899 0.5137 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1325 -0.0010 34 1 7.9586 -2.0360 1.4783 35 1 8.0679 -0.2676 1.3049 36 1 7.9100 -2.2931 -0.9744 37 1 9.3546 -1.3737 -0.4841 38 1 8.1879 -0.3322 -2.4399 39 1 8.2176 0.7454 -1.0216 40 1 5.7887 1.9061 -1.7947 41 1 4.2536 -1.1682 -3.3495 42 1 3.2009 0.2638 -3.2510 43 1 1.0197 -2.3495 -4.6568 44 1 4.1206 -2.1324 -0.0089 45 1 1.6582 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331349476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:03 Heat of formation + Delta-G solvation = -133.694566 kcal Electronic energy + Delta-G solvation = -29045.167266 eV Core-core repulsion = 25152.920169 eV Total energy + Delta-G solvation = -3892.247097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17739 -39.54641 -37.98789 -36.89081 -36.42880 -35.38239 -34.52124 -32.98762 -31.74286 -31.01728 -30.33683 -27.79487 -25.55008 -25.34856 -24.03308 -23.59831 -21.70941 -21.32674 -20.44286 -19.12933 -18.29600 -17.96270 -17.47726 -17.25458 -17.03106 -16.36059 -16.11506 -16.00731 -15.58244 -15.45735 -15.30060 -15.14317 -14.49209 -14.48021 -14.21601 -14.18905 -14.03401 -13.67936 -13.42548 -13.10120 -13.06675 -13.01499 -12.96924 -12.84179 -12.75128 -12.62073 -12.54093 -12.35145 -12.14805 -11.86635 -11.78048 -11.75821 -11.49733 -11.18810 -10.76393 -10.62002 -10.19041 -9.71525 -9.31394 -8.37084 -6.55946 -0.43561 0.45565 0.60767 1.35961 1.36889 1.50400 1.94379 2.31327 2.74251 2.91630 2.95676 2.98166 3.46508 3.66163 3.74966 3.88673 4.00374 4.01419 4.09169 4.14140 4.23943 4.24366 4.40148 4.53432 4.60073 4.66131 4.68951 4.75421 4.80755 4.84531 4.90948 4.91809 4.94472 4.98882 5.07832 5.23772 5.25645 5.33026 5.33976 5.37822 5.57217 5.68587 5.74143 5.79351 6.14211 6.19765 6.30707 6.52894 7.14876 8.73892 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.005770 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.818331 B = 4851.253048 C = 6604.166501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.111 4.111 5 C -0.098 4.098 6 C 0.143 3.857 7 H 0.097 0.903 8 O -0.385 6.385 9 C 0.055 3.945 10 C -0.152 4.152 11 C -0.141 4.141 12 C 0.131 3.869 13 H 0.068 0.932 14 N -1.101 6.101 15 S 2.616 3.384 16 O -1.003 7.003 17 O -1.000 7.000 18 C -0.418 4.418 19 C -0.568 4.568 20 H 0.060 0.940 21 C 0.032 3.968 22 N -0.894 5.894 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.267 1.267 27 C -0.102 4.102 28 C -0.130 4.130 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.423 0.577 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.271 0.729 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 2.744 15.337 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.129 4.129 5 C -0.098 4.098 6 C 0.084 3.916 7 H 0.115 0.885 8 O -0.303 6.303 9 C -0.021 4.021 10 C -0.191 4.191 11 C -0.180 4.180 12 C 0.023 3.977 13 H 0.087 0.913 14 N -0.861 5.861 15 S 2.714 3.286 16 O -0.994 6.994 17 O -0.990 6.990 18 C -0.552 4.552 19 C -0.607 4.607 20 H 0.078 0.922 21 C -0.172 4.172 22 N -0.530 5.530 23 Si 0.780 3.220 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.192 1.192 27 C -0.120 4.120 28 C -0.148 4.148 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.259 0.741 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.194 2.731 14.702 16.185 hybrid contribution -0.853 -0.385 -0.781 1.219 sum 5.341 2.347 13.920 15.093 Atomic orbital electron populations 1.20792 0.90158 1.03655 1.02123 1.20230 0.97287 0.93348 0.98512 1.21255 0.94446 0.98091 1.01266 1.21152 0.94414 0.97690 0.99640 1.19606 0.93948 0.93763 1.02502 1.20967 0.90102 0.91347 0.89232 0.88510 1.87982 1.22996 1.48599 1.70750 1.22883 0.79276 1.03725 0.96230 1.22235 1.02846 0.98026 0.95944 1.22194 0.93495 1.00708 1.01630 1.21416 0.95860 0.87571 0.92879 0.91346 1.55280 1.83969 1.17102 1.29760 1.04610 0.76658 0.74628 0.72709 1.93443 1.86170 1.38804 1.80979 1.93441 1.50953 1.77251 1.77389 1.27640 1.13580 1.09914 1.04037 1.20700 1.15718 1.34458 0.89850 0.92216 1.25719 0.95460 0.94001 1.02031 1.70058 1.19141 1.31005 1.32751 0.85519 0.78798 0.78758 0.78953 1.18959 1.19272 1.19162 1.21009 0.94155 0.98288 0.98580 1.21163 0.94495 0.98156 1.01030 0.92258 0.90848 0.89815 0.84169 0.83666 0.86728 0.90973 0.91991 0.87976 0.91703 0.89094 0.74110 0.91119 0.90676 0.91963 0.86333 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 10.01 71.24 0.71 -2.10 16 2 C -0.09 -2.87 5.88 -19.87 -0.12 -2.99 16 3 C -0.13 -3.75 9.70 22.27 0.22 -3.53 16 4 C -0.11 -3.01 9.49 22.27 0.21 -2.80 16 5 C -0.10 -2.88 4.72 -19.87 -0.09 -2.97 16 6 C 0.14 3.57 2.48 29.88 0.07 3.64 16 7 H 0.10 1.89 8.05 -2.39 -0.02 1.88 16 8 O -0.38 -9.39 9.56 -148.98 -1.42 -10.81 16 9 C 0.05 0.93 6.84 72.02 0.49 1.43 16 10 C -0.15 -2.92 6.14 30.69 0.19 -2.73 16 11 C -0.14 -3.45 5.64 30.71 0.17 -3.27 16 12 C 0.13 3.79 2.16 45.08 0.10 3.89 16 13 H 0.07 2.35 7.16 -2.38 -0.02 2.33 16 14 N -1.10 -34.59 4.85 -169.02 -0.82 -35.41 16 15 S 2.62 113.50 5.30 -56.49 -0.30 113.20 16 16 O -1.00 -47.83 18.08 -127.65 -2.31 -50.13 16 17 O -1.00 -47.65 17.18 -127.65 -2.19 -49.84 16 18 C -0.42 -21.02 5.72 71.24 0.41 -20.61 16 19 C -0.57 -32.27 9.13 25.60 0.23 -32.04 16 20 H 0.06 3.38 7.71 -2.91 -0.02 3.35 16 21 C 0.03 1.79 5.46 84.65 0.46 2.25 16 22 N -0.89 -50.48 13.29 21.45 0.28 -50.20 16 23 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 C -0.10 -3.36 9.35 22.27 0.21 -3.15 16 28 C -0.13 -4.31 9.70 22.27 0.22 -4.09 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 31 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 32 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.91 7.50 -2.39 -0.02 1.90 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.42 10.64 8.80 -96.75 -0.85 9.79 16 41 H 0.07 3.63 7.44 -2.39 -0.02 3.61 16 42 H 0.08 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.12 3.87 7.64 -2.91 -0.02 3.85 16 45 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -72.78 381.46 -1.11 -73.90 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.14 Total: 33.26 kcal Atomic # 6 Polarization: -72.57 SS G_CDS: 3.48 Total: -69.08 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -0.53 Total: -85.61 kcal Atomic # 8 Polarization: -104.86 SS G_CDS: -5.93 Total: -110.79 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 113.50 SS G_CDS: -0.30 Total: 113.20 kcal Total: -72.78 -1.11 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331349476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.797 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds