Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 S 1.65599 * 120.00012 * 165.00017 * 14 13 2 16 16 O 1.42097 * 106.40866 * 178.54114 * 15 14 13 17 17 O 1.42102 * 106.40573 * 311.46330 * 15 14 13 18 18 C 1.76207 * 107.21714 * 65.00092 * 15 14 13 19 19 C 1.38278 * 120.11692 * 269.72275 * 18 15 14 20 20 C 1.37934 * 120.35116 * 179.97438 * 19 18 15 21 21 C 1.39285 * 120.24066 * 0.55473 * 20 19 18 22 22 C 1.38884 * 118.86984 * 359.40830 * 21 20 19 23 23 C 1.37738 * 120.79375 * 0.42249 * 22 21 20 24 24 C 1.51653 * 107.03317 * 180.68191 * 22 21 20 25 25 C 1.54703 * 101.92127 * 15.47704 * 24 22 21 26 26 O 1.36129 * 129.88612 * 179.09754 * 21 20 19 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97001 * 120.00191 * 345.00817 * 14 13 2 39 39 H 1.08007 * 119.82790 * 0.17707 * 19 18 15 40 40 H 1.08003 * 119.87768 * 180.28243 * 20 19 18 41 41 H 1.07995 * 120.01607 * 179.76931 * 23 22 21 42 42 H 1.09005 * 110.93653 * 133.63064 * 24 22 21 43 43 H 1.08994 * 110.94002 * 257.28291 * 24 22 21 44 44 H 1.09000 * 110.75147 * 93.01218 * 25 24 22 45 45 H 1.08999 * 110.75200 * 216.18547 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.1157 0.1508 4.8677 17 8 1.0840 -2.0793 3.7397 18 6 3.3303 -0.9988 4.3093 19 6 3.9849 -2.1554 3.9273 20 6 5.3193 -2.3329 4.2281 21 6 6.0165 -1.3525 4.9300 22 6 5.3485 -0.1949 5.3074 23 6 4.0168 -0.0181 5.0029 24 6 6.3527 0.6819 6.0303 25 6 7.6956 0.0262 5.6305 26 8 7.3141 -1.3294 5.3409 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 1.1851 0.8644 2.3729 39 1 3.4493 -2.9226 3.3877 40 1 5.8241 -3.2373 3.9221 41 1 3.5087 0.8854 5.3057 42 1 6.2999 1.7105 5.6733 43 1 6.2029 0.6378 7.1090 44 1 8.1121 0.5075 4.7456 45 1 8.4045 0.0624 6.4577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344982476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -94.100559 kcal Electronic energy + Delta-G solvation = -27616.932919 eV Core-core repulsion = 23726.402747 eV Total energy + Delta-G solvation = -3890.530172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49175 -37.86482 -37.70689 -37.10775 -35.77756 -33.56371 -33.11737 -31.90393 -30.68563 -29.63363 -27.04005 -26.47091 -25.85453 -24.17490 -22.99385 -22.75040 -22.21976 -19.44553 -18.44087 -17.84090 -17.80550 -17.10333 -16.93067 -16.52070 -16.33381 -15.62641 -14.72033 -14.57236 -14.52315 -14.17150 -14.10197 -13.64142 -13.45241 -13.38058 -13.30000 -13.05982 -12.81903 -12.43134 -12.22275 -12.08628 -12.03218 -11.97372 -11.84869 -11.46237 -11.30513 -11.23167 -10.99827 -10.97701 -10.85985 -10.61566 -10.40830 -10.26276 -9.89981 -9.31449 -9.26192 -9.16420 -8.92303 -8.78548 -8.36183 -6.00928 -4.01687 0.39834 0.65763 0.96526 2.75771 2.98080 3.30778 3.31861 3.37208 3.38988 3.81129 3.92706 4.11218 4.43204 4.44540 4.48298 4.57411 4.84065 4.90909 5.00269 5.20452 5.29480 5.29691 5.32340 5.34904 5.54749 5.57575 5.68141 5.74196 5.81628 5.86402 5.92399 6.13194 6.16257 6.23396 6.34179 6.40056 6.66555 6.69171 6.71438 7.05364 7.08996 7.13993 7.19639 7.62013 7.75278 7.97864 8.40541 9.02758 9.61446 11.10511 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003030 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.723468 B = 9238.601242 C =10292.740979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.123 3.877 14 N -1.109 6.109 15 S 2.699 3.301 16 O -0.969 6.969 17 O -0.956 6.956 18 C -0.703 4.703 19 C 0.019 3.981 20 C -0.157 4.157 21 C 0.159 3.841 22 C -0.201 4.201 23 C 0.032 3.968 24 C -0.109 4.109 25 C 0.049 3.951 26 O -0.300 6.300 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 3.875 19.892 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.003 4.003 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.002 4.002 14 N -0.872 5.872 15 S 2.787 3.213 16 O -0.959 6.959 17 O -0.946 6.946 18 C -0.789 4.789 19 C 0.000 4.000 20 C -0.177 4.177 21 C 0.112 3.888 22 C -0.202 4.202 23 C 0.013 3.987 24 C -0.146 4.146 25 C -0.025 4.025 26 O -0.213 6.213 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.244 3.139 20.326 21.805 hybrid contribution 0.495 0.998 -1.060 1.538 sum 7.739 4.137 19.265 21.170 Atomic orbital electron populations 1.21761 0.95080 1.01372 1.00390 1.20809 0.95715 0.95681 0.94468 1.21763 1.00357 0.96041 1.00364 1.19124 0.96249 0.95345 0.89608 1.21159 1.31146 1.12102 0.90526 0.92286 1.25001 0.95320 0.95078 0.99048 1.69949 1.36946 1.23071 1.23528 0.86716 0.79203 0.79737 0.82666 1.20369 1.21433 1.20313 1.21613 0.98075 0.96369 0.84168 1.55484 1.78253 1.30571 1.22891 1.01678 0.73472 0.73658 0.72444 1.93561 1.78123 1.63805 1.60408 1.93590 1.75721 1.39669 1.85654 1.30975 1.27466 1.03436 1.17044 1.20750 0.92875 0.94477 0.91936 1.20409 0.94473 1.00328 1.02442 1.19870 0.83977 0.94543 0.90390 1.20820 0.95756 0.98075 1.05594 1.19967 0.91661 0.96720 0.90399 1.21815 0.91607 0.99970 1.01243 1.23933 0.97154 0.79392 1.02065 1.86861 1.24664 1.29549 1.80260 0.94853 0.91592 0.93222 0.93430 0.91434 0.95027 0.96395 0.96203 0.93013 0.90437 0.92129 0.74636 0.83014 0.84234 0.84058 0.88523 0.88860 0.89932 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 2 C -0.07 -1.19 0.55 -154.51 -0.08 -1.27 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.29 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.12 1.91 5.11 -4.04 -0.02 1.89 16 14 N -1.11 -14.71 5.33 -10.61 -0.06 -14.77 16 15 S 2.70 36.54 5.74 -107.50 -0.62 35.93 16 16 O -0.97 -14.65 17.30 -57.17 -0.99 -15.64 16 17 O -0.96 -15.51 16.75 -57.17 -0.96 -16.46 16 18 C -0.70 -8.68 5.95 -39.52 -0.24 -8.91 16 19 C 0.02 0.22 9.50 -39.68 -0.38 -0.15 16 20 C -0.16 -1.78 10.06 -39.30 -0.40 -2.18 16 21 C 0.16 1.82 7.04 -38.95 -0.27 1.55 16 22 C -0.20 -2.13 6.27 -104.10 -0.65 -2.79 16 23 C 0.03 0.36 9.51 -39.72 -0.38 -0.02 16 24 C -0.11 -0.77 7.12 -26.52 -0.19 -0.96 16 25 C 0.05 0.33 8.01 38.05 0.30 0.63 16 26 O -0.30 -3.17 11.10 -20.15 -0.22 -3.39 16 27 H 0.03 0.50 7.20 -51.93 -0.37 0.12 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 32 H 0.03 0.43 6.60 -51.93 -0.34 0.09 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.42 4.99 6.47 -34.47 -0.22 4.77 16 39 H 0.15 1.63 7.61 -52.48 -0.40 1.23 16 40 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.14 1.37 7.63 -52.49 -0.40 0.97 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -33.27 374.57 -10.15 -43.42 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.49 Total: 1.93 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.18 Total: -27.45 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.68 Total: -39.92 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.17 Total: -35.49 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 36.54 SS G_CDS: -0.62 Total: 35.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.27 -10.15 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344982476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.683 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds