Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 S 1.65599 * 120.00012 * 165.00017 * 14 13 2 16 16 O 1.42097 * 106.40866 * 178.54114 * 15 14 13 17 17 O 1.42102 * 106.40573 * 311.46330 * 15 14 13 18 18 C 1.76207 * 107.21714 * 65.00092 * 15 14 13 19 19 C 1.38278 * 120.11692 * 269.72275 * 18 15 14 20 20 C 1.37934 * 120.35116 * 179.97438 * 19 18 15 21 21 C 1.39285 * 120.24066 * 0.55473 * 20 19 18 22 22 C 1.38884 * 118.86984 * 359.40830 * 21 20 19 23 23 C 1.37738 * 120.79375 * 0.42249 * 22 21 20 24 24 C 1.51653 * 107.03317 * 180.68191 * 22 21 20 25 25 C 1.54703 * 101.92127 * 15.47704 * 24 22 21 26 26 O 1.36129 * 129.88612 * 179.09754 * 21 20 19 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97001 * 120.00191 * 345.00817 * 14 13 2 39 39 H 1.08007 * 119.82790 * 0.17707 * 19 18 15 40 40 H 1.08003 * 119.87768 * 180.28243 * 20 19 18 41 41 H 1.07995 * 120.01607 * 179.76931 * 23 22 21 42 42 H 1.09005 * 110.93653 * 133.63064 * 24 22 21 43 43 H 1.08994 * 110.94002 * 257.28291 * 24 22 21 44 44 H 1.09000 * 110.75147 * 93.01218 * 25 24 22 45 45 H 1.08999 * 110.75200 * 216.18547 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 16 1.6258 -0.7782 3.9212 16 8 1.1157 0.1508 4.8677 17 8 1.0840 -2.0793 3.7397 18 6 3.3303 -0.9988 4.3093 19 6 3.9849 -2.1554 3.9273 20 6 5.3193 -2.3329 4.2281 21 6 6.0165 -1.3525 4.9300 22 6 5.3485 -0.1949 5.3074 23 6 4.0168 -0.0181 5.0029 24 6 6.3527 0.6819 6.0303 25 6 7.6956 0.0262 5.6305 26 8 7.3141 -1.3294 5.3409 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 1.1851 0.8644 2.3729 39 1 3.4493 -2.9226 3.3877 40 1 5.8241 -3.2373 3.9221 41 1 3.5087 0.8854 5.3057 42 1 6.2999 1.7105 5.6733 43 1 6.2029 0.6378 7.1090 44 1 8.1121 0.5075 4.7456 45 1 8.4045 0.0624 6.4577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344982476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -116.369638 kcal Electronic energy + Delta-G solvation = -27617.898579 eV Core-core repulsion = 23726.402747 eV Total energy + Delta-G solvation = -3891.495832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22575 -39.18858 -38.63189 -38.29562 -36.95870 -35.20934 -33.81686 -33.62963 -31.53420 -30.32932 -28.93454 -27.88536 -27.23465 -24.89369 -24.61599 -23.79472 -22.96156 -20.53959 -19.88218 -18.84302 -18.59916 -18.30965 -18.19129 -17.78476 -17.19470 -16.80560 -16.46419 -15.87358 -15.52408 -15.30201 -15.07377 -14.92640 -14.43152 -14.34766 -14.19587 -14.10276 -13.94884 -13.87051 -13.76899 -13.25836 -13.20973 -13.12885 -12.86671 -12.76001 -12.67834 -12.57901 -12.24774 -12.17400 -12.12058 -12.05587 -11.97465 -11.94167 -11.47587 -10.91529 -10.81596 -10.45897 -10.38863 -10.12837 -9.58523 -8.10318 -6.16399 -0.64050 -0.28063 0.12902 1.44349 1.45569 1.52619 1.95260 2.07318 2.38354 2.47196 2.75876 3.16356 3.24447 3.45240 3.56242 3.76772 3.96923 4.05713 4.08639 4.11995 4.18016 4.28699 4.38370 4.53668 4.55394 4.74443 4.76340 4.79443 4.81749 4.83233 4.91989 4.96212 4.98431 5.05157 5.10723 5.20167 5.25341 5.36095 5.52840 5.57454 5.59817 5.63476 5.88575 5.94451 5.95884 6.12504 6.38097 6.98412 7.50597 9.01559 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.003030 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.723468 B = 9238.601242 C =10292.740979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.068 0.932 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.271 1.271 13 C 0.131 3.869 14 N -1.102 6.102 15 S 2.719 3.281 16 O -0.981 6.981 17 O -0.986 6.986 18 C -0.709 4.709 19 C 0.005 3.995 20 C -0.168 4.168 21 C 0.148 3.852 22 C -0.205 4.205 23 C 0.022 3.978 24 C -0.106 4.106 25 C 0.042 3.958 26 O -0.316 6.316 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.068 0.932 33 H -0.005 1.005 34 H -0.010 1.010 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.425 0.575 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 5.999 21.282 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.064 4.064 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.217 1.217 12 H -0.196 1.196 13 C 0.005 3.995 14 N -0.865 5.865 15 S 2.810 3.190 16 O -0.972 6.972 17 O -0.977 6.977 18 C -0.798 4.798 19 C -0.014 4.014 20 C -0.188 4.188 21 C 0.101 3.899 22 C -0.207 4.207 23 C 0.003 3.997 24 C -0.143 4.143 25 C -0.031 4.031 26 O -0.229 6.229 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.013 0.987 34 H 0.009 0.991 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.263 0.737 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.677 5.297 21.722 23.640 hybrid contribution 0.444 0.327 -1.411 1.515 sum 8.121 5.624 20.311 22.586 Atomic orbital electron populations 1.21738 0.94530 1.00980 1.01237 1.20656 0.96138 0.96389 0.93190 1.21712 1.00291 0.94821 1.01343 1.19002 0.94693 0.94289 0.91931 1.21594 1.30261 1.12029 0.91360 0.91418 1.25852 0.95770 0.95873 1.02375 1.70090 1.38731 1.24851 1.24012 0.85694 0.78830 0.78853 0.78814 1.19283 1.21674 1.19578 1.21360 0.98574 0.95812 0.83741 1.55261 1.78437 1.30748 1.22049 1.00848 0.73595 0.72612 0.71910 1.93538 1.78919 1.64078 1.60646 1.93551 1.77002 1.41123 1.85979 1.30697 1.26444 1.04281 1.18366 1.20878 0.93361 0.94700 0.92472 1.20613 0.94425 1.01114 1.02624 1.20104 0.84687 0.94828 0.90281 1.21236 0.95860 0.98502 1.05099 1.20206 0.92205 0.97002 0.90269 1.21958 0.90274 1.00316 1.01767 1.24283 0.97619 0.77607 1.03618 1.86847 1.24099 1.31922 1.80020 0.91658 0.93015 0.94291 0.93581 0.93131 0.91329 0.98675 0.99124 0.93238 0.91163 0.91211 0.73664 0.82746 0.83039 0.82510 0.86548 0.87394 0.89070 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.05 71.98 0.58 -3.83 16 2 C -0.06 -2.24 0.55 -52.18 -0.03 -2.27 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.04 1.87 4.04 29.85 0.12 1.99 16 5 C -0.51 -27.04 7.65 25.60 0.20 -26.84 16 6 H 0.07 3.38 5.68 -2.91 -0.02 3.36 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -55.50 13.29 21.45 0.28 -55.21 16 9 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.13 4.01 5.11 86.38 0.44 4.45 16 14 N -1.10 -27.52 5.33 -187.49 -1.00 -28.52 16 15 S 2.72 71.17 5.74 -56.49 -0.32 70.85 16 16 O -0.98 -28.20 17.30 -128.00 -2.21 -30.42 16 17 O -0.99 -31.90 16.75 -128.00 -2.14 -34.05 16 18 C -0.71 -16.93 5.95 22.31 0.13 -16.80 16 19 C 0.01 0.12 9.50 22.21 0.21 0.33 16 20 C -0.17 -3.77 10.06 22.45 0.23 -3.54 16 21 C 0.15 3.22 7.04 22.68 0.16 3.38 16 22 C -0.21 -3.97 6.27 -19.52 -0.12 -4.09 16 23 C 0.02 0.47 9.51 22.18 0.21 0.68 16 24 C -0.11 -1.17 7.12 30.73 0.22 -0.95 16 25 C 0.04 0.45 8.01 72.56 0.58 1.03 16 26 O -0.32 -6.13 11.10 -95.01 -1.05 -7.19 16 27 H 0.06 1.82 7.20 -2.39 -0.02 1.80 16 28 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.79 6.62 -2.38 -0.02 1.77 16 32 H 0.07 1.67 6.60 -2.39 -0.02 1.66 16 33 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.43 9.06 6.47 -96.75 -0.63 8.44 16 39 H 0.15 3.42 7.61 -2.91 -0.02 3.40 16 40 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 41 H 0.16 2.70 7.63 -2.91 -0.02 2.67 16 42 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -72.24 374.57 -0.08 -72.32 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.38 Total: 16.48 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.97 Total: -49.49 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -0.71 Total: -83.74 kcal Atomic # 8 Polarization: -66.24 SS G_CDS: -5.41 Total: -71.65 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 71.17 SS G_CDS: -0.32 Total: 70.85 kcal Total: -72.24 -0.08 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344982476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.050 kcal (2) G-P(sol) polarization free energy of solvation -72.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds