Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00233 * 4 2 1 6 6 H 1.08000 * 120.00290 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00258 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99506 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47155 * 59.99584 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46879 * 299.99587 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.34775 * 119.99531 * 179.97438 * 14 13 2 16 16 O 1.21552 * 120.00294 * 0.02562 * 15 14 13 17 17 C 1.47850 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.39597 * 120.14426 * 359.72852 * 17 15 14 19 19 C 1.37934 * 119.85151 * 179.78667 * 18 17 15 20 20 C 1.38386 * 120.14385 * 0.48949 * 19 18 17 21 21 C 1.38341 * 120.29363 * 359.73778 * 20 19 18 22 22 S 1.76198 * 119.92396 * 180.02562 * 21 20 19 23 23 C 1.81399 * 104.44860 * 270.02131 * 22 21 20 24 24 O 1.42091 * 104.28064 * 26.10018 * 22 21 20 25 25 O 1.42109 * 104.27405 * 153.95622 * 22 21 20 26 26 C 1.37976 * 120.14123 * 0.02562 * 21 20 19 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 37 37 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 38 38 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 39 39 H 1.07995 * 120.07066 * 0.02562 * 18 17 15 40 40 H 1.07997 * 119.92910 * 180.20795 * 19 18 17 41 41 H 1.08000 * 119.85317 * 179.76723 * 20 19 18 42 42 H 1.08999 * 109.46833 * 60.01110 * 23 22 21 43 43 H 1.09004 * 109.46837 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47513 * 300.00357 * 23 22 21 45 45 H 1.08003 * 120.06657 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8525 9 14 1.2472 0.3977 -5.2572 10 1 1.7421 1.7979 -5.2578 11 1 1.7423 -0.3023 -6.4697 12 1 -0.2378 0.3976 -5.2567 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8768 -0.4911 3.6696 16 8 2.5756 -1.4794 3.7812 17 6 1.3844 0.2062 4.8767 18 6 0.5871 1.3454 4.7520 19 6 0.1274 1.9887 5.8822 20 6 0.4632 1.5131 7.1377 21 6 1.2568 0.3875 7.2682 22 16 1.6779 -0.2100 8.8714 23 6 3.2213 0.6492 9.2837 24 8 0.6181 0.2416 9.7033 25 8 1.9162 -1.5974 8.6768 26 6 1.7192 -0.2682 6.1457 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7490 -1.2491 35 1 2.8608 -1.8831 -4.7334 36 1 1.6766 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2495 38 1 0.9942 0.7583 2.3564 39 1 0.3278 1.7198 3.7728 40 1 -0.4922 2.8681 5.7872 41 1 0.1038 2.0226 8.0195 42 1 3.0493 1.7255 9.2829 43 1 3.5585 0.3363 10.2719 44 1 3.9833 0.4024 8.5444 45 1 2.3390 -1.1466 6.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345982803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = -91.008744 kcal Electronic energy + Delta-G solvation = -26718.913020 eV Core-core repulsion = 22828.516919 eV Total energy + Delta-G solvation = -3890.396101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43933 -38.73175 -37.49858 -37.11485 -36.32840 -33.88517 -32.39794 -31.64761 -31.52426 -29.96218 -27.22903 -26.59821 -26.49749 -24.29812 -23.57478 -22.60950 -20.83383 -19.51619 -18.82494 -17.95602 -16.69924 -16.64852 -16.53203 -16.43761 -16.23287 -15.67550 -15.24935 -14.92051 -14.53152 -14.40854 -13.93738 -13.86757 -13.74351 -13.67106 -13.20800 -13.12992 -12.88530 -12.67401 -12.46748 -12.41096 -12.21896 -12.10922 -12.02458 -11.53309 -11.23983 -11.11575 -11.06061 -10.91645 -10.69325 -10.47991 -10.32672 -10.03770 -9.94975 -9.89493 -9.49259 -9.25069 -8.99333 -8.85594 -8.39631 -6.03668 -4.05420 -0.39197 0.23501 0.62328 2.38406 2.53475 3.17400 3.28920 3.33041 3.34823 3.35718 3.56578 3.70314 4.25859 4.30088 4.36150 4.41464 4.47895 4.52880 4.70949 4.95972 5.09734 5.16140 5.31537 5.36760 5.41641 5.54043 5.54461 5.65819 5.72091 5.75521 6.06774 6.12529 6.18850 6.26806 6.30198 6.43485 6.54908 6.65105 6.97597 6.99999 7.04706 7.55134 7.59388 7.70677 7.94296 8.21500 8.35904 8.98953 9.57813 11.07680 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031863 B = 0.002029 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.551775 B =13798.517041 C =14276.040126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.714 5.714 15 C 0.549 3.451 16 O -0.535 6.535 17 C -0.146 4.146 18 C -0.035 4.035 19 C -0.144 4.144 20 C -0.006 4.006 21 C -0.670 4.670 22 S 2.501 3.499 23 C -0.650 4.650 24 O -0.937 6.937 25 O -0.931 6.931 26 C 0.032 3.968 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 10.122 25.597 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.366 5.366 15 C 0.335 3.665 16 O -0.413 6.413 17 C -0.150 4.150 18 C -0.053 4.053 19 C -0.163 4.163 20 C -0.025 4.025 21 C -0.756 4.756 22 S 2.680 3.320 23 C -0.800 4.800 24 O -0.935 6.935 25 O -0.928 6.928 26 C 0.012 3.988 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.981 8.690 25.968 27.455 hybrid contribution -0.236 1.447 -1.703 2.247 sum -2.217 10.137 24.265 26.391 Atomic orbital electron populations 1.21774 0.95235 1.01312 1.00186 1.20922 0.95498 0.95865 0.95039 1.21771 1.00653 0.95859 1.00180 1.19086 0.96398 0.95261 0.89366 1.21121 1.31369 1.12133 0.90497 0.92326 1.25018 0.95295 0.95073 0.99106 1.69951 1.36772 1.22936 1.23621 0.86700 0.79139 0.79731 0.82646 1.20341 1.21380 1.20324 1.21720 0.99138 0.96183 0.82522 1.46141 1.52848 1.31808 1.05766 1.18144 0.80861 0.84277 0.83233 1.90801 1.37923 1.25848 1.86706 1.20233 1.02408 0.97963 0.94366 1.21725 0.91635 0.92238 0.99730 1.21268 1.01649 1.01348 0.92002 1.21144 0.90747 0.91639 0.98970 1.30609 1.14312 1.09259 1.21401 1.05204 0.77057 0.75499 0.74231 1.30223 1.21894 1.15300 1.12555 1.93586 1.51252 1.82779 1.65851 1.93627 1.86146 1.28087 1.84972 1.21081 0.92025 0.95823 0.89867 0.95440 0.91282 0.93214 0.93246 0.91289 0.95449 0.96282 0.96267 0.92930 0.91420 0.91442 0.76643 0.84634 0.84191 0.83632 0.84923 0.84844 0.84703 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.13 2.16 4.56 -4.04 -0.02 2.14 16 14 N -0.71 -9.92 4.91 -61.25 -0.30 -10.22 16 15 C 0.55 8.12 7.77 -12.33 -0.10 8.03 16 16 O -0.53 -9.92 16.35 5.32 0.09 -9.83 16 17 C -0.15 -1.68 5.87 -104.97 -0.62 -2.30 16 18 C -0.03 -0.30 9.54 -39.19 -0.37 -0.67 16 19 C -0.14 -0.99 10.03 -39.64 -0.40 -1.39 16 20 C -0.01 -0.04 9.47 -39.49 -0.37 -0.42 16 21 C -0.67 -5.69 5.65 -39.64 -0.22 -5.92 16 22 S 2.50 18.18 5.80 -107.50 -0.62 17.56 16 23 C -0.65 -2.00 10.80 101.05 1.09 -0.91 16 24 O -0.94 -9.12 17.12 -57.54 -0.98 -10.11 16 25 O -0.93 -10.52 17.12 -57.54 -0.98 -11.51 16 26 C 0.03 0.35 9.01 -39.19 -0.35 -0.01 16 27 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 32 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.40 4.48 4.20 -40.82 -0.17 4.31 16 39 H 0.14 0.89 6.41 -52.49 -0.34 0.55 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.15 0.70 7.56 -52.49 -0.40 0.30 16 42 H 0.13 0.17 8.14 -51.92 -0.42 -0.26 16 43 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 44 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.16 1.78 7.16 -52.48 -0.38 1.40 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -36.43 379.53 -9.03 -45.46 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.34 Total: 0.25 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -1.32 Total: -17.86 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.44 Total: -35.53 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.88 Total: -31.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 18.18 SS G_CDS: -0.62 Total: 17.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.43 -9.03 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345982803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.548 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds