Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00233 * 4 2 1 6 6 H 1.08000 * 120.00290 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00258 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99506 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47155 * 59.99584 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46879 * 299.99587 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.34775 * 119.99531 * 179.97438 * 14 13 2 16 16 O 1.21552 * 120.00294 * 0.02562 * 15 14 13 17 17 C 1.47850 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.39597 * 120.14426 * 359.72852 * 17 15 14 19 19 C 1.37934 * 119.85151 * 179.78667 * 18 17 15 20 20 C 1.38386 * 120.14385 * 0.48949 * 19 18 17 21 21 C 1.38341 * 120.29363 * 359.73778 * 20 19 18 22 22 S 1.76198 * 119.92396 * 180.02562 * 21 20 19 23 23 C 1.81399 * 104.44860 * 270.02131 * 22 21 20 24 24 O 1.42091 * 104.28064 * 26.10018 * 22 21 20 25 25 O 1.42109 * 104.27405 * 153.95622 * 22 21 20 26 26 C 1.37976 * 120.14123 * 0.02562 * 21 20 19 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 35 35 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 37 37 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 38 38 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 39 39 H 1.07995 * 120.07066 * 0.02562 * 18 17 15 40 40 H 1.07997 * 119.92910 * 180.20795 * 19 18 17 41 41 H 1.08000 * 119.85317 * 179.76723 * 20 19 18 42 42 H 1.08999 * 109.46833 * 60.01110 * 23 22 21 43 43 H 1.09004 * 109.46837 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47513 * 300.00357 * 23 22 21 45 45 H 1.08003 * 120.06657 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8525 9 14 1.2472 0.3977 -5.2572 10 1 1.7421 1.7979 -5.2578 11 1 1.7423 -0.3023 -6.4697 12 1 -0.2378 0.3976 -5.2567 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8768 -0.4911 3.6696 16 8 2.5756 -1.4794 3.7812 17 6 1.3844 0.2062 4.8767 18 6 0.5871 1.3454 4.7520 19 6 0.1274 1.9887 5.8822 20 6 0.4632 1.5131 7.1377 21 6 1.2568 0.3875 7.2682 22 16 1.6779 -0.2100 8.8714 23 6 3.2213 0.6492 9.2837 24 8 0.6181 0.2416 9.7033 25 8 1.9162 -1.5974 8.6768 26 6 1.7192 -0.2682 6.1457 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7490 -1.2491 35 1 2.8608 -1.8831 -4.7334 36 1 1.6766 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2495 38 1 0.9942 0.7583 2.3564 39 1 0.3278 1.7198 3.7728 40 1 -0.4922 2.8681 5.7872 41 1 0.1038 2.0226 8.0195 42 1 3.0493 1.7255 9.2829 43 1 3.5585 0.3363 10.2719 44 1 3.9833 0.4024 8.5444 45 1 2.3390 -1.1466 6.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345982803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = -117.696774 kcal Electronic energy + Delta-G solvation = -26720.070299 eV Core-core repulsion = 22828.516919 eV Total energy + Delta-G solvation = -3891.553381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.45122 -39.69696 -38.56297 -38.16552 -37.00797 -35.39459 -34.11831 -32.49696 -32.26103 -30.27028 -29.12665 -27.97517 -27.82511 -25.48614 -24.57254 -23.87020 -21.86594 -20.50133 -19.73578 -19.10510 -18.37160 -17.57752 -17.30105 -17.16054 -17.05402 -16.69426 -16.51678 -16.44000 -15.66119 -15.27565 -15.24091 -14.92014 -14.73376 -14.36308 -14.17814 -13.95230 -13.94268 -13.93504 -13.65454 -13.33010 -13.16943 -13.11796 -12.84816 -12.78401 -12.73438 -12.60034 -12.33703 -12.23876 -12.10251 -12.01634 -11.69732 -11.55529 -11.31373 -10.94861 -10.85035 -10.56040 -10.50695 -10.30046 -10.04130 -8.13842 -6.21868 -0.90064 -0.44691 -0.09366 1.42941 1.44931 1.52128 1.61848 1.86882 2.04467 2.44784 2.52080 3.00015 3.15132 3.20619 3.53339 3.73000 3.85833 3.94997 4.05162 4.05596 4.11027 4.12824 4.20362 4.38473 4.45813 4.66378 4.68921 4.74509 4.76335 4.92463 4.93957 4.97179 5.05988 5.06948 5.11439 5.14227 5.31523 5.42835 5.49950 5.52089 5.55912 5.65970 5.79282 5.89525 6.29146 6.44686 6.93225 7.09069 7.45947 8.98469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031863 B = 0.002029 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.551775 B =13798.517041 C =14276.040126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.959 3.041 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.267 1.267 13 C 0.140 3.860 14 N -0.700 5.700 15 C 0.548 3.452 16 O -0.584 6.584 17 C -0.168 4.168 18 C -0.032 4.032 19 C -0.134 4.134 20 C -0.002 4.002 21 C -0.670 4.670 22 S 2.504 3.496 23 C -0.624 4.624 24 O -0.965 6.965 25 O -0.984 6.984 26 C 0.011 3.989 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.072 0.928 33 H -0.014 1.014 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 14.422 27.303 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.016 3.984 14 N -0.353 5.353 15 C 0.336 3.664 16 O -0.466 6.466 17 C -0.172 4.172 18 C -0.050 4.050 19 C -0.153 4.153 20 C -0.021 4.021 21 C -0.755 4.755 22 S 2.687 3.313 23 C -0.778 4.778 24 O -0.963 6.963 25 O -0.981 6.981 26 C -0.009 4.009 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.005 0.995 34 H 0.003 0.997 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.253 0.747 39 H 0.177 0.823 40 H 0.197 0.803 41 H 0.192 0.808 42 H 0.181 0.819 43 H 0.173 0.827 44 H 0.164 0.836 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.667 13.018 27.672 30.800 hybrid contribution 0.313 0.142 -2.097 2.125 sum -3.354 13.161 25.575 28.957 Atomic orbital electron populations 1.21721 0.93518 1.01017 1.01834 1.20711 0.96749 0.96453 0.92515 1.21712 1.00031 0.94385 1.01853 1.18976 0.94340 0.94188 0.92370 1.21553 1.30460 1.12132 0.90952 0.90737 1.25974 0.95700 0.95875 1.02808 1.70121 1.38764 1.24983 1.24144 0.85583 0.78941 0.78769 0.78240 1.19013 1.21903 1.19140 1.21301 0.98071 0.95454 0.83616 1.45849 1.52859 1.31998 1.04552 1.18712 0.79813 0.83654 0.84182 1.90773 1.40204 1.28179 1.87408 1.19992 1.04884 0.99742 0.92605 1.21996 0.90470 0.90851 1.01719 1.21730 1.00764 1.01831 0.90940 1.21634 0.89219 0.90712 1.00519 1.30681 1.14503 1.09530 1.20820 1.04970 0.78300 0.74720 0.73338 1.30040 1.17674 1.16165 1.13938 1.93543 1.53863 1.82873 1.65995 1.93565 1.87190 1.31951 1.85442 1.21005 0.93012 0.96027 0.90830 0.91039 0.92256 0.94584 0.94354 0.92311 0.90953 0.99526 0.99713 0.93210 0.93516 0.93165 0.74692 0.82266 0.80312 0.80819 0.81926 0.82654 0.83607 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 2 C -0.06 -2.32 0.54 -52.18 -0.03 -2.35 16 3 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 4 C 0.04 1.94 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.93 7.65 25.60 0.20 -26.74 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -56.83 13.29 21.45 0.28 -56.54 16 9 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.14 4.90 4.56 86.38 0.39 5.29 16 14 N -0.70 -18.82 4.91 -465.96 -2.29 -21.11 16 15 C 0.55 16.43 7.77 86.79 0.67 17.11 16 16 O -0.58 -23.04 16.35 -3.88 -0.06 -23.10 16 17 C -0.17 -3.75 5.87 -20.09 -0.12 -3.87 16 18 C -0.03 -0.44 9.54 22.53 0.21 -0.22 16 19 C -0.13 -1.23 10.03 22.23 0.22 -1.01 16 20 C 0.00 -0.02 9.47 22.33 0.21 0.19 16 21 C -0.67 -10.46 5.65 22.23 0.13 -10.34 16 22 S 2.50 34.26 5.80 -56.49 -0.33 33.93 16 23 C -0.62 -1.82 10.80 113.37 1.22 -0.60 16 24 O -0.97 -17.54 17.12 -127.65 -2.18 -19.73 16 25 O -0.98 -23.43 17.12 -127.65 -2.19 -25.61 16 26 C 0.01 0.25 9.01 22.53 0.20 0.45 16 27 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 28 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.98 6.62 -2.39 -0.02 1.96 16 32 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16 33 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 34 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.41 8.01 4.20 -92.71 -0.39 7.62 16 39 H 0.16 1.30 6.41 -2.91 -0.02 1.28 16 40 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.17 0.88 7.56 -2.91 -0.02 0.86 16 42 H 0.16 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.16 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.13 3.43 7.16 -2.91 -0.02 3.41 16 Total: -1.00 -85.79 379.53 0.95 -84.85 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.62 Total: 8.90 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 5.06 Total: -26.56 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.00 Total: -77.65 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -4.43 Total: -68.44 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 34.26 SS G_CDS: -0.33 Total: 33.93 kcal Total: -85.79 0.95 -84.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345982803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.849 kcal (2) G-P(sol) polarization free energy of solvation -85.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds