Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38264 * 119.94448 * 2 1 4 4 C 1.38153 * 120.05549 * 180.26008 * 3 2 1 5 5 C 1.38734 * 119.94117 * 359.46379 * 4 3 2 6 6 O 1.35895 * 120.05487 * 180.29966 * 5 4 3 7 7 C 1.42897 * 117.00057 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47112 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46967 * 65.00206 * 8 7 6 10 10 S 1.65603 * 120.00233 * 165.00237 * 9 8 7 11 11 O 1.42099 * 104.27494 * 181.06817 * 10 9 8 12 12 O 1.42098 * 104.27381 * 308.92203 * 10 9 8 13 13 C 1.81397 * 104.44992 * 64.99559 * 10 9 8 14 14 C 1.52994 * 109.47012 * 173.87828 * 13 10 9 15 15 C 1.50703 * 115.55093 * 65.27251 * 14 13 10 16 16 H 1.08004 * 119.99569 * 268.54537 * 15 14 13 17 17 C 1.37871 * 119.99996 * 88.54973 * 15 14 13 18 18 N 1.31515 * 120.00219 * 174.70490 * 17 15 14 19 19 Si 1.86800 * 120.00253 * 354.69563 * 17 15 14 20 20 H 1.48507 * 109.47172 * 92.55440 * 19 17 15 21 21 H 1.48499 * 109.47459 * 212.55674 * 19 17 15 22 22 H 1.48498 * 109.47131 * 332.55774 * 19 17 15 23 23 C 1.53000 * 117.49921 * 279.60052 * 14 13 10 24 24 C 1.53003 * 117.49921 * 210.94415 * 14 13 10 25 25 C 1.38735 * 119.88987 * 0.28580 * 5 4 3 26 26 C 1.38148 * 119.94393 * 359.97438 * 25 5 4 27 27 H 1.08995 * 109.46749 * 270.25310 * 1 2 3 28 28 H 1.08994 * 109.46869 * 30.25179 * 1 2 3 29 29 H 1.08998 * 109.46837 * 150.25242 * 1 2 3 30 30 H 1.07995 * 119.97288 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.02887 * 179.74329 * 4 3 2 32 32 H 1.09000 * 109.47221 * 299.99760 * 7 6 5 33 33 H 1.08993 * 109.47277 * 60.00288 * 7 6 5 34 34 H 1.08998 * 109.46947 * 184.99418 * 8 7 6 35 35 H 1.08993 * 109.47232 * 305.00072 * 8 7 6 36 36 H 0.97002 * 120.00100 * 344.99085 * 9 8 7 37 37 H 1.09000 * 109.46976 * 293.87816 * 13 10 9 38 38 H 1.08998 * 109.46890 * 53.87770 * 13 10 9 39 39 H 0.97001 * 120.00449 * 179.97438 * 18 17 15 40 40 H 1.09002 * 117.49673 * 0.02562 * 23 14 13 41 41 H 1.08998 * 117.49936 * 145.02039 * 23 14 13 42 42 H 1.09005 * 117.49615 * 214.97865 * 24 14 13 43 43 H 1.09001 * 117.49794 * 359.97193 * 24 14 13 44 44 H 1.07999 * 120.02482 * 180.02562 * 25 5 4 45 45 H 1.07994 * 119.96855 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2008 -0.0054 5 6 4.2735 0.0000 0.0004 6 8 5.6325 -0.0001 0.0012 7 6 6.2812 -1.2733 0.0067 8 6 7.7980 -1.0728 0.0062 9 7 8.2054 -0.4249 1.2554 10 16 9.8001 -0.4155 1.7017 11 8 9.8106 0.2630 2.9501 12 8 10.1993 -1.7758 1.6038 13 6 10.6207 0.5820 0.4281 14 6 12.0863 0.7943 0.8123 15 6 12.9373 -0.4491 0.8418 16 1 13.0433 -1.0092 1.7592 17 6 13.5803 -0.8717 -0.3022 18 7 14.4049 -1.8951 -0.2532 19 14 13.2803 0.0092 -1.9219 20 1 14.3014 1.0721 -2.1039 21 1 13.3742 -0.9640 -3.0396 22 1 11.9268 0.6200 -1.9099 23 6 12.3968 1.8873 1.8370 24 6 12.7530 2.0961 0.3630 25 6 3.5786 -1.2008 0.0056 26 6 2.1972 -1.1981 0.0056 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5099 30 1 1.6559 2.1326 0.0004 31 1 4.1173 2.1368 -0.0096 32 1 5.9878 -1.8267 0.8988 33 1 5.9889 -1.8338 -0.8811 34 1 8.2923 -2.0405 -0.0791 35 1 8.0812 -0.4445 -0.8381 36 1 7.5410 -0.0012 1.8211 37 1 10.5675 0.0639 -0.5295 38 1 10.1228 1.5482 0.3466 39 1 14.8571 -2.1926 -1.0581 40 1 11.5568 2.4548 2.2376 41 1 13.2167 1.7071 2.5322 42 1 13.8072 2.0532 0.0891 43 1 12.1476 2.8010 -0.2067 44 1 4.1173 -2.1369 0.0105 45 1 1.6559 -2.1326 0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346437637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -62.678083 kcal Electronic energy + Delta-G solvation = -26926.023625 eV Core-core repulsion = 23036.856033 eV Total energy + Delta-G solvation = -3889.167591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43463 -38.15568 -37.13465 -36.38325 -35.34780 -35.05174 -32.24443 -32.17407 -31.34343 -29.16533 -28.51698 -26.49637 -25.53549 -23.91066 -22.32988 -21.71936 -21.31752 -19.69148 -18.81915 -18.45986 -17.15123 -16.82714 -16.49638 -16.16782 -15.67073 -15.41376 -15.26753 -15.03611 -14.73073 -14.25108 -14.10625 -13.89358 -13.79029 -13.76879 -13.21240 -12.98970 -12.69776 -12.56231 -12.41112 -12.35753 -12.13515 -11.82186 -11.44757 -11.35899 -11.25633 -11.21516 -11.04733 -10.95130 -10.92697 -10.66081 -10.38044 -10.12950 -9.76516 -9.36459 -9.30370 -9.16457 -8.67644 -8.46750 -8.31909 -6.18088 -4.25556 0.92013 1.04186 1.12742 2.88543 3.21046 3.30983 3.31175 3.35430 3.45361 4.33372 4.35291 4.43988 4.54633 4.61667 4.65318 4.70924 4.81560 4.90316 4.93745 4.98931 5.05391 5.06904 5.18857 5.27023 5.30265 5.41110 5.49849 5.51934 5.61945 5.70968 5.74725 5.89238 5.99348 6.00105 6.03921 6.07360 6.19259 6.30629 6.42977 6.49677 6.65210 6.87194 7.06149 7.12857 7.18744 7.58720 8.35873 8.87427 9.43039 10.93333 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.002487 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.797684 B =11257.710441 C =11403.536447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C -0.082 4.082 4 C -0.149 4.149 5 C 0.128 3.872 6 O -0.311 6.311 7 C 0.052 3.948 8 C 0.118 3.882 9 N -1.131 6.131 10 S 2.615 3.385 11 O -0.967 6.967 12 O -0.940 6.940 13 C -0.576 4.576 14 C 0.001 3.999 15 C -0.509 4.509 16 H 0.087 0.913 17 C 0.088 3.912 18 N -0.883 5.883 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.185 4.185 25 C -0.206 4.206 26 C -0.081 4.081 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.129 0.871 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.289 4.323 -2.815 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.100 4.100 4 C -0.168 4.168 5 C 0.083 3.917 6 O -0.225 6.225 7 C -0.024 4.024 8 C -0.009 4.009 9 N -0.889 5.889 10 S 2.710 3.290 11 O -0.957 6.957 12 O -0.930 6.930 13 C -0.708 4.708 14 C -0.002 4.002 15 C -0.545 4.545 16 H 0.105 0.895 17 C -0.117 4.117 18 N -0.518 5.518 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.214 4.214 24 C -0.224 4.224 25 C -0.225 4.225 26 C -0.099 4.099 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.144 0.856 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.147 0.853 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.541 3.777 -2.287 24.935 hybrid contribution -0.398 0.756 -1.454 1.686 sum -24.939 4.533 -3.742 25.622 Atomic orbital electron populations 1.20713 0.91146 1.02571 1.02130 1.19836 0.96210 0.93095 1.03886 1.20851 0.92995 0.97775 0.98335 1.20473 0.93778 0.96483 1.06042 1.19037 0.82475 0.94141 0.96094 1.86100 1.16114 1.31883 1.88370 1.23086 0.92450 0.84284 1.02586 1.21354 0.92657 0.99755 0.87087 1.55962 1.28022 1.72266 1.32649 1.04943 0.72159 0.76018 0.75842 1.93522 1.85386 1.77072 1.39742 1.93578 1.80518 1.32230 1.86686 1.30294 1.09218 1.13450 1.17853 1.18860 0.88711 0.91457 1.01183 1.20342 1.28450 1.06881 0.98870 0.89519 1.24955 0.93651 0.94323 0.98756 1.69896 1.26915 1.25748 1.29224 0.86924 0.80079 0.79507 0.83346 1.20131 1.21710 1.18080 1.23025 1.03066 1.03376 0.91934 1.22986 1.01248 1.00551 0.97593 1.21299 0.95416 0.97229 1.08546 1.20832 0.93305 0.97693 0.98033 0.91456 0.91714 0.91768 0.85473 0.85088 0.90817 0.90454 0.87747 0.90707 0.75271 0.85647 0.87350 0.92290 0.89978 0.88631 0.88925 0.90663 0.85289 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.13 -1.05 5.88 -104.60 -0.62 -1.67 16 3 C -0.08 -0.68 9.69 -39.60 -0.38 -1.06 16 4 C -0.15 -1.45 9.99 -39.43 -0.39 -1.85 16 5 C 0.13 1.35 6.69 -39.21 -0.26 1.09 16 6 O -0.31 -3.47 9.94 -19.41 -0.19 -3.66 16 7 C 0.05 0.50 4.93 37.16 0.18 0.68 16 8 C 0.12 1.37 6.52 -4.04 -0.03 1.35 16 9 N -1.13 -15.77 5.85 -10.61 -0.06 -15.83 16 10 S 2.62 50.04 5.19 -107.50 -0.56 49.48 16 11 O -0.97 -20.47 18.08 -57.54 -1.04 -21.51 16 12 O -0.94 -21.63 17.16 -57.54 -0.99 -22.62 16 13 C -0.58 -11.06 5.55 37.15 0.21 -10.85 16 14 C 0.00 0.01 0.79 -155.66 -0.12 -0.11 16 15 C -0.51 -14.08 8.77 -34.44 -0.30 -14.38 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 17 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 18 N -0.88 -26.53 13.96 55.43 0.77 -25.75 16 19 Si 0.87 20.76 24.96 -169.99 -4.24 16.52 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -5.56 5.68 56.52 0.32 -5.24 16 23 C -0.18 -3.65 9.96 -26.70 -0.27 -3.91 16 24 C -0.19 -3.83 7.67 -26.69 -0.20 -4.03 16 25 C -0.21 -1.91 9.04 -39.43 -0.36 -2.26 16 26 C -0.08 -0.67 9.69 -39.60 -0.38 -1.05 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.08 0.57 7.66 -51.93 -0.40 0.18 16 34 H 0.10 1.21 7.69 -51.93 -0.40 0.81 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 5.15 8.47 -34.47 -0.29 4.86 16 37 H 0.13 2.33 6.53 -51.92 -0.34 1.99 16 38 H 0.11 1.70 8.09 -51.93 -0.42 1.28 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 42 H 0.09 1.99 7.34 -51.93 -0.38 1.61 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -35.17 382.86 -10.03 -45.19 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.82 Total: 8.34 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: -2.67 Total: -35.93 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.71 Total: -41.58 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -2.22 Total: -47.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.24 Total: 16.52 kcal Atomic # 16 Polarization: 50.04 SS G_CDS: -0.56 Total: 49.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.17 -10.03 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346437637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.485 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds